RNA–Protein interactions for RNA: ENST00000378133.4

PCDHA1-201, Transcript of protocadherin alpha 1, humanhuman

BASIC

Gene PCDHA1, Length 2,726 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-201ENST00000378133 ERCC3P19447 782 aa18.35■□□□□ 0.53
PCDHA1-201ENST00000378133 ATP1A2P50993 1020 aa18.35■□□□□ 0.53
PCDHA1-201ENST00000378133 CENPPQ6IPU0 288 aa18.35■□□□□ 0.53
PCDHA1-201ENST00000378133 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.35■□□□□ 0.53
PCDHA1-201ENST00000378133 NEDD1Q8NHV4 660 aa18.35■□□□□ 0.53
PCDHA1-201ENST00000378133 FAM207AQ9NSI2 230 aaPredicted RBP18.35■□□□□ 0.53
PCDHA1-201ENST00000378133 STIM2Q9P246 746 aa18.35■□□□□ 0.53
PCDHA1-201ENST00000378133 MYMKA6NI61 221 aa18.35■□□□□ 0.53
PCDHA1-201ENST00000378133 EPHB6O15197 1021 aa18.35■□□□□ 0.53
PCDHA1-201ENST00000378133 GRB10Q13322 594 aa18.35■□□□□ 0.53
PCDHA1-201ENST00000378133 SF3B2Q13435 895 aaKnown RBP18.35■□□□□ 0.53
PCDHA1-201ENST00000378133 CCDC181Q5TID7 509 aa18.35■□□□□ 0.53
PCDHA1-201ENST00000378133 KCTD16Q68DU8 428 aa18.35■□□□□ 0.53
PCDHA1-201ENST00000378133 C16orf86Q6ZW13 317 aa18.35■□□□□ 0.53
PCDHA1-201ENST00000378133 C2CD5Q86YS7 1000 aa18.35■□□□□ 0.53
PCDHA1-201ENST00000378133 REXO1Q8N1G1 1221 aaKnown RBP18.35■□□□□ 0.53
PCDHA1-201ENST00000378133 CABS1Q96KC9 395 aa18.35■□□□□ 0.53
PCDHA1-201ENST00000378133 BLOC1S4Q9NUP1 217 aa18.35■□□□□ 0.53
PCDHA1-201ENST00000378133 USP17L5A8MUK1 530 aa18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 MYO1FO00160 1098 aa18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 MEFVO15553 781 aaPredicted RBP18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 PPP1R2P41236 205 aa18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 FIGNQ5HY92 759 aa18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 RC3H1Q5TC82 1133 aaKnown RBP18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 ZNF572Q7Z3I7 529 aaPredicted RBP18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 ZNF804AQ7Z570 1209 aa18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 TEX11Q8IYF3 940 aa18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 PSMB7Q99436 277 aa18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 RTCBQ9Y3I0 505 aaKnown RBP18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 CAPN6Q9Y6Q1 641 aa18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 A0A1W2PQJ5 194 aa18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 PRLRP16471 622 aa18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 CXCR5P32302 372 aa18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 GRAPQ13588 217 aa18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 VWA3BQ502W6 1294 aa18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 SPATS2Q86XZ4 545 aaKnown RBP18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 SH2D3CQ8N5H7 860 aa18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 GRAPLQ8TC17 118 aaPredicted RBP18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 OSBPL9Q96SU4 736 aa18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 NDST4Q9H3R1 872 aa18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 MMRN2Q9H8L6 949 aa18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 ARHGAP20Q9P2F6 1191 aa18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 PLAGL2Q9UPG8 496 aa18.34■□□□□ 0.53
PCDHA1-201ENST00000378133 CDK17Q00537 523 aa18.33■□□□□ 0.53
PCDHA1-201ENST00000378133 NNTQ13423 1086 aa18.33■□□□□ 0.53
PCDHA1-201ENST00000378133 ZIM3Q96PE6 472 aa18.33■□□□□ 0.53
PCDHA1-201ENST00000378133 MLXIPQ9HAP2 919 aa18.33■□□□□ 0.53
PCDHA1-201ENST00000378133 SMARCAL1Q9NZC9 954 aa18.33■□□□□ 0.53
PCDHA1-201ENST00000378133 MYH10P35580 1976 aa18.33■□□□□ 0.53
PCDHA1-201ENST00000378133 LY75O60449 1722 aa18.33■□□□□ 0.52
PCDHA1-201ENST00000378133 FRMPD2Q68DX3 1309 aaPredicted RBP18.33■□□□□ 0.52
PCDHA1-201ENST00000378133 ATXN2Q99700 1313 aaKnown RBP18.33■□□□□ 0.52
PCDHA1-201ENST00000378133 SNED1Q8TER0 1413 aa18.33■□□□□ 0.52
PCDHA1-201ENST00000378133 MOCS3O95396 460 aa18.33■□□□□ 0.52
PCDHA1-201ENST00000378133 FNTAP49354 379 aa18.33■□□□□ 0.52
PCDHA1-201ENST00000378133 CALCRLQ16602 461 aa18.33■□□□□ 0.52
PCDHA1-201ENST00000378133 NFRKBQ6P4R8 1299 aa18.33■□□□□ 0.52
PCDHA1-201ENST00000378133 CAVIN3Q969G5 261 aa18.33■□□□□ 0.52
PCDHA1-201ENST00000378133 COA7Q96BR5 231 aa18.33■□□□□ 0.52
PCDHA1-201ENST00000378133 PNMA5Q96PV4 448 aa18.33■□□□□ 0.52
PCDHA1-201ENST00000378133 MTMR9Q96QG7 549 aa18.33■□□□□ 0.52
PCDHA1-201ENST00000378133 IFIH1Q9BYX4 1025 aaKnown RBP18.33■□□□□ 0.52
PCDHA1-201ENST00000378133 KRT14P02533 472 aa18.32■□□□□ 0.52
PCDHA1-201ENST00000378133 TCP1P17987 556 aaKnown RBP18.32■□□□□ 0.52
PCDHA1-201ENST00000378133 HAUS3Q68CZ6 603 aa18.32■□□□□ 0.52
PCDHA1-201ENST00000378133 SIK3Q9Y2K2 1263 aa18.32■□□□□ 0.52
PCDHA1-201ENST00000378133 PCDHA13Q9Y5I0 950 aa18.32■□□□□ 0.52
PCDHA1-201ENST00000378133 SLC37A4O43826 429 aa18.32■□□□□ 0.52
PCDHA1-201ENST00000378133 FSBPO95073 299 aa18.32■□□□□ 0.52
PCDHA1-201ENST00000378133 TDP2O95551 362 aa18.32■□□□□ 0.52
PCDHA1-201ENST00000378133 PAFAH1B1P43034 410 aa18.32■□□□□ 0.52
PCDHA1-201ENST00000378133 COBLL1Q53SF7 1204 aa18.32■□□□□ 0.52
PCDHA1-201ENST00000378133 UNC13DQ70J99 1090 aa18.32■□□□□ 0.52
PCDHA1-201ENST00000378133 LARP4BQ92615 738 aaKnown RBP18.32■□□□□ 0.52
PCDHA1-201ENST00000378133 CDK5RAP3Q96JB5 506 aa18.32■□□□□ 0.52
PCDHA1-201ENST00000378133 NUDT12Q9BQG2 462 aa18.32■□□□□ 0.52
PCDHA1-201ENST00000378133 HYOU1Q9Y4L1 999 aa18.32■□□□□ 0.52
PCDHA1-201ENST00000378133 NAV1Q8NEY1 1877 aa18.32■□□□□ 0.52
PCDHA1-201ENST00000378133 POTEMA6NI47 508 aa18.31■□□□□ 0.52
PCDHA1-201ENST00000378133 ATP2B2Q01814 1243 aa18.31■□□□□ 0.52
PCDHA1-201ENST00000378133 C8orf74Q6P047 294 aa18.31■□□□□ 0.52
PCDHA1-201ENST00000378133 MICALCLQ6ZW33 695 aa18.31■□□□□ 0.52
PCDHA1-201ENST00000378133 JPH2Q9BR39 696 aaPredicted RBP18.31■□□□□ 0.52
PCDHA1-201ENST00000378133 SH2D4AQ9H788 454 aa18.31■□□□□ 0.52
PCDHA1-201ENST00000378133 CD209Q9NNX6 404 aa18.31■□□□□ 0.52
PCDHA1-201ENST00000378133 EHD2Q9NZN4 543 aa18.31■□□□□ 0.52
PCDHA1-201ENST00000378133 GPR75-ASB3A0A0A6YYF3 556 aa18.31■□□□□ 0.52
PCDHA1-201ENST00000378133 EIF4A3P38919 411 aaKnown RBP18.31■□□□□ 0.52
PCDHA1-201ENST00000378133 EDIL3O43854 480 aa18.3■□□□□ 0.52
PCDHA1-201ENST00000378133 HNRNPH3P31942 346 aaKnown RBP18.3■□□□□ 0.52
PCDHA1-201ENST00000378133 LSP1P33241 339 aa18.3■□□□□ 0.52
PCDHA1-201ENST00000378133 KIF11P52732 1056 aa18.3■□□□□ 0.52
PCDHA1-201ENST00000378133 LRRC41Q15345 812 aa18.3■□□□□ 0.52
PCDHA1-201ENST00000378133 RRAGAQ7L523 313 aa18.3■□□□□ 0.52
PCDHA1-201ENST00000378133 GLIS3Q8NEA6 775 aa18.3■□□□□ 0.52
PCDHA1-201ENST00000378133 RNPC3Q96LT9 517 aaKnown RBP18.3■□□□□ 0.52
PCDHA1-201ENST00000378133 ALS2CR12Q96Q35 445 aa18.3■□□□□ 0.52
PCDHA1-201ENST00000378133 EPN3Q9H201 632 aa18.3■□□□□ 0.52
PCDHA1-201ENST00000378133 POLD4Q9HCU8 107 aa18.3■□□□□ 0.52
PCDHA1-201ENST00000378133 CCNL1Q9UK58 526 aaPredicted RBP18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms