RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 FAM170AA1A519 330 aa15.96■□□□□ 0.15
TCOF1-202ENST00000377797 THAP9Q9H5L6 903 aa15.96■□□□□ 0.15
TCOF1-202ENST00000377797 TRIM49BA6NDI0 452 aa15.96■□□□□ 0.15
TCOF1-202ENST00000377797 CCND2P30279 289 aa15.96■□□□□ 0.15
TCOF1-202ENST00000377797 USP11P51784 963 aa15.96■□□□□ 0.15
TCOF1-202ENST00000377797 TUBB2AQ13885 445 aa15.96■□□□□ 0.15
TCOF1-202ENST00000377797 ZBTB9Q96C00 473 aa15.96■□□□□ 0.15
TCOF1-202ENST00000377797 BPIFA3Q9BQP9 254 aa15.96■□□□□ 0.15
TCOF1-202ENST00000377797 TUBB2BQ9BVA1 445 aa15.96■□□□□ 0.15
TCOF1-202ENST00000377797 NRBP2Q9NSY0 501 aa15.96■□□□□ 0.15
TCOF1-202ENST00000377797 MAD2L2Q9UI95 211 aa15.96■□□□□ 0.15
TCOF1-202ENST00000377797 LDHDQ86WU2 507 aa15.96■□□□□ 0.14
TCOF1-202ENST00000377797 ZMYND12Q9H0C1 365 aa15.96■□□□□ 0.14
TCOF1-202ENST00000377797 JMJD4Q9H9V9 463 aa15.96■□□□□ 0.14
TCOF1-202ENST00000377797 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.96■□□□□ 0.14
TCOF1-202ENST00000377797 SFI1A8K8P3 1242 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 ELF2Q15723 593 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 TCP11X2Q5H9J9 407 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 RNF146Q9NTX7 359 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 CACNA1FO60840 1977 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 FAM205AQ6ZU69 1335 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 SPOPO43791 374 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 GRIN1Q05586 938 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 SNRNP48Q6IEG0 339 aaKnown RBP15.95■□□□□ 0.14
TCOF1-202ENST00000377797 KRT222Q8N1A0 295 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 TSC1Q92574 1164 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 TSPYL1Q9H0U9 437 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 HAUS4Q9H6D7 363 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 SPON1Q9HCB6 807 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 ABCB11O95342 1321 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 HNRNPDLO14979 420 aaKnown RBP15.95■□□□□ 0.14
TCOF1-202ENST00000377797 DLATP10515 647 aaKnown RBP15.95■□□□□ 0.14
TCOF1-202ENST00000377797 LRRC63Q05C16 580 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 SLC7A3Q8WY07 619 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 CCSER1Q9C0I3 900 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 POLD4Q9HCU8 107 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 CTTNBP2NLQ9P2B4 639 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 PALM3A6NDB9 673 aaPredicted RBP15.95■□□□□ 0.14
TCOF1-202ENST00000377797 H0YCG3 227 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 PRPF6O94906 941 aaKnown RBP15.95■□□□□ 0.14
TCOF1-202ENST00000377797 TUBBP07437 444 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 CCNA1P78396 465 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 FAM186BQ8IYM0 893 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 POMGNT1Q8WZA1 660 aa15.95■□□□□ 0.14
TCOF1-202ENST00000377797 ERICH4A6NGS2 130 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 TNNC1P63316 161 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 MTMR1Q13613 665 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 RAD54LQ92698 747 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 HOXC10Q9NYD6 342 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 STAT3P40763 770 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 COL9A3Q14050 684 aaPredicted RBP15.94■□□□□ 0.14
TCOF1-202ENST00000377797 APBB1IPQ7Z5R6 666 aaPredicted RBP15.94■□□□□ 0.14
TCOF1-202ENST00000377797 CCDC50Q8IVM0 306 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 ZBTB8OSQ8IWT0 167 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 RETREG2Q8NC44 543 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 ENGASEQ8NFI3 743 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 PRR12Q9ULL5 1215 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 PVALEFA0A1B0GWK0 134 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 POTEFA5A3E0 1075 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 POTEIP0CG38 1075 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 OSBPP22059 807 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 TERF1P54274 439 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 POTEGQ6S5H5 508 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 POTEEQ6S8J3 1075 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 ANKRD13CQ8N6S4 541 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 SLC5A4Q9NY91 659 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 SMARCA1P28370 1054 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 HOOK3Q86VS8 718 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 DHX40Q8IX18 779 aaKnown RBP15.94■□□□□ 0.14
TCOF1-202ENST00000377797 U2AF1L4Q8WU68 220 aaKnown RBP15.94■□□□□ 0.14
TCOF1-202ENST00000377797 IFT81Q8WYA0 676 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 PPP1R13BQ96KQ4 1090 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 NDST4Q9H3R1 872 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 FAM184BQ9ULE4 1060 aa15.94■□□□□ 0.14
TCOF1-202ENST00000377797 H0YHG0 523 aa15.93■□□□□ 0.14
TCOF1-202ENST00000377797 PSMC2P35998 433 aaKnown RBP15.93■□□□□ 0.14
TCOF1-202ENST00000377797 VAV2P52735 878 aa15.93■□□□□ 0.14
TCOF1-202ENST00000377797 SMC1AQ14683 1233 aaKnown RBP15.93■□□□□ 0.14
TCOF1-202ENST00000377797 TRERF1Q96PN7 1200 aa15.93■□□□□ 0.14
TCOF1-202ENST00000377797 TRIM6Q9C030 488 aaPredicted RBP15.93■□□□□ 0.14
TCOF1-202ENST00000377797 TMEM60Q9H2L4 133 aa15.93■□□□□ 0.14
TCOF1-202ENST00000377797 PRDM10Q9NQV6 1147 aa15.93■□□□□ 0.14
TCOF1-202ENST00000377797 ACTN2P35609 894 aa15.93■□□□□ 0.14
TCOF1-202ENST00000377797 DPP9Q86TI2 863 aa15.93■□□□□ 0.14
TCOF1-202ENST00000377797 PPM1KQ8N3J5 372 aa15.93■□□□□ 0.14
TCOF1-202ENST00000377797 MSANTD4Q8NCY6 345 aa15.93■□□□□ 0.14
TCOF1-202ENST00000377797 SLC10A4Q96EP9 437 aa15.93■□□□□ 0.14
TCOF1-202ENST00000377797 VCPKMTQ9H867 229 aa15.93■□□□□ 0.14
TCOF1-202ENST00000377797 SMIM22K7EJ46 135 aa15.93■□□□□ 0.14
TCOF1-202ENST00000377797 KRT19P08727 400 aa15.93■□□□□ 0.14
TCOF1-202ENST00000377797 GMPSP49915 693 aaPredicted RBP15.93■□□□□ 0.14
TCOF1-202ENST00000377797 IQCB1Q15051 598 aa15.93■□□□□ 0.14
TCOF1-202ENST00000377797 FAM160B1Q5W0V3 765 aa15.93■□□□□ 0.14
TCOF1-202ENST00000377797 MYOZ2Q9NPC6 264 aa15.93■□□□□ 0.14
TCOF1-202ENST00000377797 LMO7Q8WWI1 1683 aa15.93■□□□□ 0.14
TCOF1-202ENST00000377797 HMGCS2P54868 508 aa15.93■□□□□ 0.14
TCOF1-202ENST00000377797 PLCB3Q01970 1234 aa15.93■□□□□ 0.14
TCOF1-202ENST00000377797 PTPAQ15257 358 aa15.93■□□□□ 0.14
TCOF1-202ENST00000377797 SAMD7Q7Z3H4 446 aa15.93■□□□□ 0.14
TCOF1-202ENST00000377797 AGBL3Q8NEM8 1001 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms