RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 PTGISQ16647 500 aa25■■□□□ 1.59
CCDC28B-201ENST00000373602 HSDL1Q3SXM5 330 aa25■■□□□ 1.59
CCDC28B-201ENST00000373602 KCNB2Q92953 911 aa25■■□□□ 1.59
CCDC28B-201ENST00000373602 SPATA33Q96N06 139 aa25■■□□□ 1.59
CCDC28B-201ENST00000373602 RBM28Q9NW13 759 aaKnown RBP25■■□□□ 1.59
CCDC28B-201ENST00000373602 BRPF3Q9ULD4 1205 aa25■■□□□ 1.59
CCDC28B-201ENST00000373602 NOD1Q9Y239 953 aa25■■□□□ 1.59
CCDC28B-201ENST00000373602 hCG_1642624A0A1W2PR95 340 aa24.99■■□□□ 1.59
CCDC28B-201ENST00000373602 PFKMP08237 780 aa24.99■■□□□ 1.59
CCDC28B-201ENST00000373602 ZNF286BP0CG31 522 aa24.99■■□□□ 1.59
CCDC28B-201ENST00000373602 BFSP2Q13515 415 aa24.99■■□□□ 1.59
CCDC28B-201ENST00000373602 MFSD10Q14728 455 aa24.99■■□□□ 1.59
CCDC28B-201ENST00000373602 PCNX4Q63HM2 1172 aa24.99■■□□□ 1.59
CCDC28B-201ENST00000373602 GDF6Q6KF10 455 aaPredicted RBP24.99■■□□□ 1.59
CCDC28B-201ENST00000373602 XRRA1Q6P2D8 792 aa24.99■■□□□ 1.59
CCDC28B-201ENST00000373602 OTOP2Q7RTS6 562 aa24.99■■□□□ 1.59
CCDC28B-201ENST00000373602 RETREG2Q8NC44 543 aa24.99■■□□□ 1.59
CCDC28B-201ENST00000373602 CTAGE1Q96RT6 745 aa24.99■■□□□ 1.59
CCDC28B-201ENST00000373602 PSTPIP2Q9H939 334 aa24.99■■□□□ 1.59
CCDC28B-201ENST00000373602 GTF2IRD1Q9UHL9 959 aa24.99■■□□□ 1.59
CCDC28B-201ENST00000373602 GRXCR1A8MXD5 290 aa24.98■■□□□ 1.59
CCDC28B-201ENST00000373602 SPATA31C2B4DYI2 1134 aa24.98■■□□□ 1.59
CCDC28B-201ENST00000373602 SORBS3O60504 671 aa24.98■■□□□ 1.59
CCDC28B-201ENST00000373602 HMGB1P09429 215 aaKnown RBP24.98■■□□□ 1.59
CCDC28B-201ENST00000373602 IQCF3P0C7M6 154 aa24.98■■□□□ 1.59
CCDC28B-201ENST00000373602 RFC2P35250 354 aa24.98■■□□□ 1.59
CCDC28B-201ENST00000373602 TIFAQ96CG3 184 aa24.98■■□□□ 1.59
CCDC28B-201ENST00000373602 ALG1Q9BT22 464 aa24.98■■□□□ 1.59
CCDC28B-201ENST00000373602 PBX4Q9BYU1 374 aa24.98■■□□□ 1.59
CCDC28B-201ENST00000373602 MLXIPQ9HAP2 919 aa24.98■■□□□ 1.59
CCDC28B-201ENST00000373602 RTEL1Q9NZ71 1219 aa24.98■■□□□ 1.59
CCDC28B-201ENST00000373602 HDAC6Q9UBN7 1215 aa24.98■■□□□ 1.59
CCDC28B-201ENST00000373602 CNTNAP5Q8WYK1 1306 aa24.97■■□□□ 1.59
CCDC28B-201ENST00000373602 ZBTB43O43298 467 aa24.97■■□□□ 1.59
CCDC28B-201ENST00000373602 SEMA3FQ13275 785 aa24.97■■□□□ 1.59
CCDC28B-201ENST00000373602 RTN1Q16799 776 aa24.97■■□□□ 1.59
CCDC28B-201ENST00000373602 KIAA0753Q2KHM9 967 aa24.97■■□□□ 1.59
CCDC28B-201ENST00000373602 C7orf31Q8N865 590 aa24.97■■□□□ 1.59
CCDC28B-201ENST00000373602 SLC17A8Q8NDX2 589 aa24.97■■□□□ 1.59
CCDC28B-201ENST00000373602 BCAS3Q9H6U6 928 aa24.97■■□□□ 1.59
CCDC28B-201ENST00000373602 FIBPO43427 364 aa24.96■■□□□ 1.59
CCDC28B-201ENST00000373602 HSPA4P34932 840 aa24.96■■□□□ 1.59
CCDC28B-201ENST00000373602 PBX2P40425 430 aa24.96■■□□□ 1.59
CCDC28B-201ENST00000373602 FUT2Q10981 343 aa24.96■■□□□ 1.59
CCDC28B-201ENST00000373602 NEDD9Q14511 834 aa24.96■■□□□ 1.59
CCDC28B-201ENST00000373602 HEATR3Q7Z4Q2 680 aa24.96■■□□□ 1.59
CCDC28B-201ENST00000373602 DEFB128Q7Z7B8 93 aa24.96■■□□□ 1.59
CCDC28B-201ENST00000373602 CCDC155Q8N6L0 562 aa24.96■■□□□ 1.59
CCDC28B-201ENST00000373602 CAGE1Q8TC20 777 aa24.96■■□□□ 1.59
CCDC28B-201ENST00000373602 LAMA2P24043 3122 aaKnown RBP24.96■■□□□ 1.59
CCDC28B-201ENST00000373602 RCAN1P53805 252 aa24.95■■□□□ 1.58
CCDC28B-201ENST00000373602 METTL7BQ6UX53 244 aa24.95■■□□□ 1.58
CCDC28B-201ENST00000373602 C16orf70Q9BSU1 422 aa24.95■■□□□ 1.58
CCDC28B-201ENST00000373602 ZNF576Q9H609 170 aa24.95■■□□□ 1.58
CCDC28B-201ENST00000373602 SCN5AQ14524 2016 aa24.95■■□□□ 1.58
CCDC28B-201ENST00000373602 KLF18A0A0U1RQI7 1052 aa24.94■■□□□ 1.58
CCDC28B-201ENST00000373602 RBL2Q08999 1139 aa24.94■■□□□ 1.58
CCDC28B-201ENST00000373602 UBE2SQ16763 222 aa24.94■■□□□ 1.58
CCDC28B-201ENST00000373602 NLRX1Q86UT6 975 aa24.94■■□□□ 1.58
CCDC28B-201ENST00000373602 AFAP1L1Q8TED9 768 aa24.94■■□□□ 1.58
CCDC28B-201ENST00000373602 MYLIPQ8WY64 445 aa24.94■■□□□ 1.58
CCDC28B-201ENST00000373602 DHX38Q92620 1227 aaKnown RBP24.94■■□□□ 1.58
CCDC28B-201ENST00000373602 FAM217BQ9NTX9 383 aaPredicted RBP24.94■■□□□ 1.58
CCDC28B-201ENST00000373602 SNX14Q9Y5W7 946 aa24.94■■□□□ 1.58
CCDC28B-201ENST00000373602 SLC4A7Q9Y6M7 1214 aa24.94■■□□□ 1.58
CCDC28B-201ENST00000373602 TANC1Q9C0D5 1861 aa24.94■■□□□ 1.58
CCDC28B-201ENST00000373602 GOLGA8AA7E2F4 631 aa24.93■■□□□ 1.58
CCDC28B-201ENST00000373602 GOLGA8BA8MQT2 603 aa24.93■■□□□ 1.58
CCDC28B-201ENST00000373602 NEFLP07196 543 aa24.93■■□□□ 1.58
CCDC28B-201ENST00000373602 CPA1P15085 419 aa24.93■■□□□ 1.58
CCDC28B-201ENST00000373602 RAB30Q15771 203 aa24.93■■□□□ 1.58
CCDC28B-201ENST00000373602 WWC2Q6AWC2 1192 aa24.93■■□□□ 1.58
CCDC28B-201ENST00000373602 CYFIP1Q7L576 1253 aa24.93■■□□□ 1.58
CCDC28B-201ENST00000373602 JAKMIP1Q96N16 626 aaKnown RBP24.93■■□□□ 1.58
CCDC28B-201ENST00000373602 SENP7Q9BQF6 1050 aa24.93■■□□□ 1.58
CCDC28B-201ENST00000373602 MSRAQ9UJ68 235 aa24.93■■□□□ 1.58
CCDC28B-201ENST00000373602 SPDYE3A6NKU9 549 aa24.92■■□□□ 1.58
CCDC28B-201ENST00000373602 ZBBXA8MT70 800 aa24.92■■□□□ 1.58
CCDC28B-201ENST00000373602 NOP56O00567 594 aaKnown RBP24.92■■□□□ 1.58
CCDC28B-201ENST00000373602 REC8O95072 547 aa24.92■■□□□ 1.58
CCDC28B-201ENST00000373602 LGALS2P05162 132 aa24.92■■□□□ 1.58
CCDC28B-201ENST00000373602 ACTN1P12814 892 aa24.92■■□□□ 1.58
CCDC28B-201ENST00000373602 GRIN2CQ14957 1233 aa24.92■■□□□ 1.58
CCDC28B-201ENST00000373602 GPRASP2Q96D09 838 aa24.92■■□□□ 1.58
CCDC28B-201ENST00000373602 V9GY48 417 aaPredicted RBP24.92■■□□□ 1.58
CCDC28B-201ENST00000373602 TRIP12Q14669 1992 aaPredicted RBP24.91■■□□□ 1.58
CCDC28B-201ENST00000373602 H3BRB1 525 aa24.91■■□□□ 1.58
CCDC28B-201ENST00000373602 SELPP16109 830 aa24.91■■□□□ 1.58
CCDC28B-201ENST00000373602 CDC27P30260 824 aa24.91■■□□□ 1.58
CCDC28B-201ENST00000373602 FGD1P98174 961 aa24.91■■□□□ 1.58
CCDC28B-201ENST00000373602 PTK7Q13308 1070 aa24.91■■□□□ 1.58
CCDC28B-201ENST00000373602 TYW1BQ6NUM6 668 aa24.91■■□□□ 1.58
CCDC28B-201ENST00000373602 TEX2Q8IWB9 1127 aa24.91■■□□□ 1.58
CCDC28B-201ENST00000373602 GPR20Q99678 358 aa24.91■■□□□ 1.58
CCDC28B-201ENST00000373602 USP26Q9BXU7 913 aa24.91■■□□□ 1.58
CCDC28B-201ENST00000373602 TUT1Q9H6E5 874 aaKnown RBP24.91■■□□□ 1.58
CCDC28B-201ENST00000373602 PCDHA6Q9UN73 950 aa24.91■■□□□ 1.58
CCDC28B-201ENST00000373602 PCDHA8Q9Y5H6 950 aa24.91■■□□□ 1.58
CCDC28B-201ENST00000373602 COL6A3P12111 3177 aa24.91■■□□□ 1.58
CCDC28B-201ENST00000373602 hCG_1984214I3L0E3 225 aa24.9■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms