RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 RAD51CO43502 376 aa15.09■□□□□ 0.01
USP49-201ENST00000373006 NAPAP54920 295 aa15.09■□□□□ 0.01
USP49-201ENST00000373006 GSCP56915 257 aaPredicted RBP15.09■□□□□ 0.01
USP49-201ENST00000373006 KCNMA1Q12791 1236 aa15.09■□□□□ 0.01
USP49-201ENST00000373006 E2F5Q15329 346 aa15.09■□□□□ 0.01
USP49-201ENST00000373006 TUBB8Q3ZCM7 444 aa15.09■□□□□ 0.01
USP49-201ENST00000373006 SV2BQ7L1I2 683 aa15.09■□□□□ 0.01
USP49-201ENST00000373006 DDX42Q86XP3 938 aaKnown RBP eCLIP15.09■□□□□ 0.01
USP49-201ENST00000373006 TBC1D5Q92609 795 aa15.09■□□□□ 0.01
USP49-201ENST00000373006 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.09■□□□□ 0.01
USP49-201ENST00000373006 TOGARAM1Q9Y4F4 1720 aa15.09■□□□□ 0.01
USP49-201ENST00000373006 PLCH1Q4KWH8 1693 aa15.09■□□□□ 0.01
USP49-201ENST00000373006 NUP98P52948 1817 aa15.09■□□□□ 0.01
USP49-201ENST00000373006 TLR2O60603 784 aa15.09■□□□□ 0.01
USP49-201ENST00000373006 FSBPO95073 299 aa15.09■□□□□ 0.01
USP49-201ENST00000373006 CALML4Q96GE6 196 aa15.09■□□□□ 0.01
USP49-201ENST00000373006 GOLGB1Q14789 3259 aaKnown RBP15.08■□□□□ 0.01
USP49-201ENST00000373006 PRPHP41219 470 aa15.08■□□□□ 0.01
USP49-201ENST00000373006 POLR2FP61218 127 aaKnown RBP15.08■□□□□ 0.01
USP49-201ENST00000373006 SLC44A5Q8NCS7 719 aa15.08■□□□□ 0.01
USP49-201ENST00000373006 MKNK2Q9HBH9 465 aa15.08■□□□□ 0.01
USP49-201ENST00000373006 DONSONQ9NYP3 566 aa15.08■□□□□ 0.01
USP49-201ENST00000373006 BIN2Q9UBW5 565 aaPredicted RBP15.08■□□□□ 0.01
USP49-201ENST00000373006 ADAMTS1Q9UHI8 967 aa15.08■□□□□ 0.01
USP49-201ENST00000373006 LAD1O00515 517 aa15.08■□□□□ 0
USP49-201ENST00000373006 RPSAP08865 295 aaKnown RBP15.08■□□□□ 0
USP49-201ENST00000373006 CRKLP46109 303 aaKnown RBP15.08■□□□□ 0
USP49-201ENST00000373006 ITGB3BPQ13352 177 aaPredicted RBP15.08■□□□□ 0
USP49-201ENST00000373006 KIAA0753Q2KHM9 967 aa15.08■□□□□ 0
USP49-201ENST00000373006 LRCH2Q5VUJ6 765 aa15.08■□□□□ 0
USP49-201ENST00000373006 MICALCLQ6ZW33 695 aa15.08■□□□□ 0
USP49-201ENST00000373006 AK8Q96MA6 479 aa15.08■□□□□ 0
USP49-201ENST00000373006 ZNF142P52746 1687 aaPredicted RBP15.08■□□□□ 0
USP49-201ENST00000373006 COL4A1P02462 1669 aa15.08■□□□□ 0
USP49-201ENST00000373006 SMCO2A6NFE2 343 aa15.08■□□□□ 0
USP49-201ENST00000373006 TMOD1P28289 359 aa15.08■□□□□ 0
USP49-201ENST00000373006 SLC9C1Q4G0N8 1177 aa15.08■□□□□ 0
USP49-201ENST00000373006 RNF10Q8N5U6 811 aaKnown RBP15.08■□□□□ 0
USP49-201ENST00000373006 SCLT1Q96NL6 688 aa15.08■□□□□ 0
USP49-201ENST00000373006 BLOC1S4Q9NUP1 217 aa15.08■□□□□ 0
USP49-201ENST00000373006 LRP5O75197 1615 aa15.07■□□□□ 0
USP49-201ENST00000373006 NTSR2O95665 410 aa15.07■□□□□ 0
USP49-201ENST00000373006 PAX7P23759 505 aa15.07■□□□□ 0
USP49-201ENST00000373006 NONOQ15233 471 aaKnown RBP eCLIP15.07■□□□□ 0
USP49-201ENST00000373006 FAM83BQ5T0W9 1011 aa15.07■□□□□ 0
USP49-201ENST00000373006 CCDC13Q8IYE1 715 aa15.07■□□□□ 0
USP49-201ENST00000373006 TBCKQ8TEA7 893 aa15.07■□□□□ 0
USP49-201ENST00000373006 MAGEF1Q9HAY2 307 aa15.07■□□□□ 0
USP49-201ENST00000373006 TBC1D7Q9P0N9 293 aa15.07■□□□□ 0
USP49-201ENST00000373006 ARAP2Q8WZ64 1704 aa15.07■□□□□ 0
USP49-201ENST00000373006 A0A087X0T9 212 aa15.07■□□□□ 0
USP49-201ENST00000373006 FAM228BP0C875 321 aa15.07■□□□□ 0
USP49-201ENST00000373006 PEX19P40855 299 aa15.07■□□□□ 0
USP49-201ENST00000373006 GRB10Q13322 594 aa15.07■□□□□ 0
USP49-201ENST00000373006 GRM4Q14833 912 aa15.07■□□□□ 0
USP49-201ENST00000373006 CDC37Q16543 378 aaPredicted RBP15.07■□□□□ 0
USP49-201ENST00000373006 SFMBT2Q5VUG0 894 aa15.07■□□□□ 0
USP49-201ENST00000373006 IQCDQ96DY2 449 aa15.07■□□□□ 0
USP49-201ENST00000373006 UIMC1Q96RL1 719 aa15.07■□□□□ 0
USP49-201ENST00000373006 ATP8A2Q9NTI2 1148 aa15.07■□□□□ 0
USP49-201ENST00000373006 TMEM260Q9NX78 707 aa15.07■□□□□ 0
USP49-201ENST00000373006 ARPP21Q9UBL0 812 aaPredicted RBP15.07■□□□□ 0
USP49-201ENST00000373006 MINPP1Q9UNW1 487 aa15.07■□□□□ 0
USP49-201ENST00000373006 KLRF2D3W0D1 207 aa15.06■□□□□ 0
USP49-201ENST00000373006 KCNK3O14649 394 aa15.06■□□□□ 0
USP49-201ENST00000373006 TSPY3P0CV98 308 aa15.06■□□□□ 0
USP49-201ENST00000373006 TSPY8P0CW00 308 aa15.06■□□□□ 0
USP49-201ENST00000373006 BIRC2Q13490 618 aa15.06■□□□□ 0
USP49-201ENST00000373006 RAPGEF1Q13905 1077 aa15.06■□□□□ 0
USP49-201ENST00000373006 CCDC40Q4G0X9 1142 aa15.06■□□□□ 0
USP49-201ENST00000373006 DGKHQ86XP1 1220 aa15.06■□□□□ 0
USP49-201ENST00000373006 CDK5RAP3Q96JB5 506 aa15.06■□□□□ 0
USP49-201ENST00000373006 NUDT12Q9BQG2 462 aa15.06■□□□□ 0
USP49-201ENST00000373006 POTEMA6NI47 508 aa15.06■□□□□ 0
USP49-201ENST00000373006 GOLGA6L10A6NI86 522 aa15.06■□□□□ 0
USP49-201ENST00000373006 TRAF5O00463 557 aa15.06■□□□□ 0
USP49-201ENST00000373006 FAM107AO95990 144 aa15.06■□□□□ 0
USP49-201ENST00000373006 NF2P35240 595 aa15.06■□□□□ 0
USP49-201ENST00000373006 SEMA3FQ13275 785 aa15.06■□□□□ 0
USP49-201ENST00000373006 UBE4AQ14139 1066 aa15.06■□□□□ 0
USP49-201ENST00000373006 ODF2Q5BJF6 829 aa15.06■□□□□ 0
USP49-201ENST00000373006 NAIF1Q69YI7 327 aaPredicted RBP15.06■□□□□ 0
USP49-201ENST00000373006 INTS5Q6P9B9 1019 aaKnown RBP15.06■□□□□ 0
USP49-201ENST00000373006 LRRC55Q6ZSA7 311 aa15.06■□□□□ 0
USP49-201ENST00000373006 NEK8Q86SG6 692 aa15.06■□□□□ 0
USP49-201ENST00000373006 LSM14BQ9BX40 385 aaKnown RBP15.06■□□□□ 0
USP49-201ENST00000373006 AP1M1Q9BXS5 423 aa15.06■□□□□ 0
USP49-201ENST00000373006 KLC4Q9NSK0 619 aa15.06■□□□□ 0
USP49-201ENST00000373006 TSKSQ9UJT2 592 aa15.06■□□□□ 0
USP49-201ENST00000373006 CACNA1SQ13698 1873 aa15.06■□□□□ 0
USP49-201ENST00000373006 SSU72P8A0A1W2PR75 194 aa15.06■□□□□ 0
USP49-201ENST00000373006 NOL4O94818 638 aa15.06■□□□□ 0
USP49-201ENST00000373006 PPP1R2P41236 205 aa15.06■□□□□ 0
USP49-201ENST00000373006 ERVK-9P63128 1117 aa15.06■□□□□ 0
USP49-201ENST00000373006 NAB2Q15742 525 aa15.06■□□□□ 0
USP49-201ENST00000373006 SPRED3Q2MJR0 410 aa15.06■□□□□ 0
USP49-201ENST00000373006 UNC13DQ70J99 1090 aa15.06■□□□□ 0
USP49-201ENST00000373006 SPATS2Q86XZ4 545 aaKnown RBP15.06■□□□□ 0
USP49-201ENST00000373006 FAM133AQ8N9E0 248 aa15.06■□□□□ 0
USP49-201ENST00000373006 LARP4BQ92615 738 aaKnown RBP15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms