RNA–Protein interactions for RNA: ENST00000368671.3

CLRN3-201, Transcript of clarin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLRN3, Length 1,152 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3-201ENST00000368671 ARHGAP1Q07960 439 aa12.06□□□□□ -0.48
CLRN3-201ENST00000368671 STXBP2Q15833 593 aa12.06□□□□□ -0.48
CLRN3-201ENST00000368671 PTGISQ16647 500 aa12.06□□□□□ -0.48
CLRN3-201ENST00000368671 CCDC62Q6P9F0 684 aa12.06□□□□□ -0.48
CLRN3-201ENST00000368671 ASB2Q96Q27 587 aa12.06□□□□□ -0.48
CLRN3-201ENST00000368671 SLC9A7Q96T83 725 aa12.06□□□□□ -0.48
CLRN3-201ENST00000368671 RMDN3Q96TC7 470 aa12.06□□□□□ -0.48
CLRN3-201ENST00000368671 UBAC1Q9BSL1 405 aa12.06□□□□□ -0.48
CLRN3-201ENST00000368671 KRT23Q9C075 422 aa12.06□□□□□ -0.48
CLRN3-201ENST00000368671 JMJD4Q9H9V9 463 aa12.06□□□□□ -0.48
CLRN3-201ENST00000368671 CTNNA3Q9UI47 895 aa12.06□□□□□ -0.48
CLRN3-201ENST00000368671 PTPRSQ13332 1948 aa12.05□□□□□ -0.48
CLRN3-201ENST00000368671 VARS2Q5ST30 1063 aaKnown RBP12.05□□□□□ -0.48
CLRN3-201ENST00000368671 IFIT1BQ5T764 474 aaKnown RBP12.05□□□□□ -0.48
CLRN3-201ENST00000368671 GDF6Q6KF10 455 aaPredicted RBP12.05□□□□□ -0.48
CLRN3-201ENST00000368671 STAG2Q8N3U4 1231 aa12.05□□□□□ -0.48
CLRN3-201ENST00000368671 CCDC155Q8N6L0 562 aa12.05□□□□□ -0.48
CLRN3-201ENST00000368671 IL27Q8NEV9 243 aa12.05□□□□□ -0.48
CLRN3-201ENST00000368671 IWS1Q96ST2 819 aa12.05□□□□□ -0.48
CLRN3-201ENST00000368671 ALG1Q9BT22 464 aa12.05□□□□□ -0.48
CLRN3-201ENST00000368671 MAF1Q9H063 256 aa12.05□□□□□ -0.48
CLRN3-201ENST00000368671 CNNM2Q9H8M5 875 aa12.05□□□□□ -0.48
CLRN3-201ENST00000368671 LHX6Q9UPM6 363 aa12.05□□□□□ -0.48
CLRN3-201ENST00000368671 CDH23Q9H251 3354 aa12.04□□□□□ -0.48
CLRN3-201ENST00000368671 COL4A4P53420 1690 aaPredicted RBP12.04□□□□□ -0.48
CLRN3-201ENST00000368671 MYH7BA7E2Y1 1941 aa12.04□□□□□ -0.48
CLRN3-201ENST00000368671 SORBS3O60504 671 aa12.04□□□□□ -0.48
CLRN3-201ENST00000368671 CASTP20810 708 aaKnown RBP12.04□□□□□ -0.48
CLRN3-201ENST00000368671 MRPS5P82675 430 aaKnown RBP12.04□□□□□ -0.48
CLRN3-201ENST00000368671 SKIV2LQ15477 1246 aaKnown RBP12.04□□□□□ -0.48
CLRN3-201ENST00000368671 E2F4Q16254 413 aa12.04□□□□□ -0.48
CLRN3-201ENST00000368671 CYB5R4Q7L1T6 521 aa12.04□□□□□ -0.48
CLRN3-201ENST00000368671 HERC6Q8IVU3 1022 aa12.04□□□□□ -0.48
CLRN3-201ENST00000368671 PHOSPHO2Q8TCD6 241 aa12.04□□□□□ -0.48
CLRN3-201ENST00000368671 ADAMTS19Q8TE59 1207 aa12.04□□□□□ -0.48
CLRN3-201ENST00000368671 KAT2BQ92831 832 aa12.04□□□□□ -0.48
CLRN3-201ENST00000368671 AMNQ9BXJ7 453 aa12.04□□□□□ -0.48
CLRN3-201ENST00000368671 IL25Q9H293 177 aa12.04□□□□□ -0.48
CLRN3-201ENST00000368671 PXMP2Q9NR77 195 aa12.04□□□□□ -0.48
CLRN3-201ENST00000368671 WDR70Q9NW82 654 aa12.04□□□□□ -0.48
CLRN3-201ENST00000368671 DDX41Q9UJV9 622 aaKnown RBP12.04□□□□□ -0.48
CLRN3-201ENST00000368671 MRVI1Q9Y6F6 885 aa12.04□□□□□ -0.48
CLRN3-201ENST00000368671 TRIP12Q14669 1992 aaPredicted RBP12.03□□□□□ -0.48
CLRN3-201ENST00000368671 KIF28PB7ZC32 967 aa12.03□□□□□ -0.48
CLRN3-201ENST00000368671 KLRF2D3W0D1 207 aa12.03□□□□□ -0.48
CLRN3-201ENST00000368671 EIF3JO75822 258 aaKnown RBP12.03□□□□□ -0.48
CLRN3-201ENST00000368671 ARHGEF15O94989 841 aa12.03□□□□□ -0.48
CLRN3-201ENST00000368671 NR3C2P08235 984 aa12.03□□□□□ -0.48
CLRN3-201ENST00000368671 ZNF286BP0CG31 522 aa12.03□□□□□ -0.48
CLRN3-201ENST00000368671 MYCLP12524 364 aaPredicted RBP12.03□□□□□ -0.48
CLRN3-201ENST00000368671 KCNJ6P48051 423 aa12.03□□□□□ -0.48
CLRN3-201ENST00000368671 PSEN2P49810 448 aa12.03□□□□□ -0.48
CLRN3-201ENST00000368671 DGKDQ16760 1214 aa12.03□□□□□ -0.48
CLRN3-201ENST00000368671 LRRC8DQ7L1W4 858 aa12.03□□□□□ -0.48
CLRN3-201ENST00000368671 SESTD1Q86VW0 696 aa12.03□□□□□ -0.48
CLRN3-201ENST00000368671 HOMER1Q86YM7 354 aa12.03□□□□□ -0.48
CLRN3-201ENST00000368671 DHX37Q8IY37 1157 aaKnown RBP12.03□□□□□ -0.48
CLRN3-201ENST00000368671 C7orf31Q8N865 590 aa12.03□□□□□ -0.48
CLRN3-201ENST00000368671 CAGE1Q8TC20 777 aa12.03□□□□□ -0.48
CLRN3-201ENST00000368671 AFAP1L1Q8TED9 768 aa12.03□□□□□ -0.48
CLRN3-201ENST00000368671 ARNTL2Q8WYA1 636 aa12.03□□□□□ -0.48
CLRN3-201ENST00000368671 DHX38Q92620 1227 aaKnown RBP12.03□□□□□ -0.48
CLRN3-201ENST00000368671 HDAC6Q9UBN7 1215 aa12.03□□□□□ -0.48
CLRN3-201ENST00000368671 ARIH1Q9Y4X5 557 aaPredicted RBP12.03□□□□□ -0.48
CLRN3-201ENST00000368671 EPOPA6NHQ4 379 aa12.02□□□□□ -0.49
CLRN3-201ENST00000368671 RBAK-RBAKDNI3L0D1 243 aa12.02□□□□□ -0.49
CLRN3-201ENST00000368671 OPLAHO14841 1288 aa12.02□□□□□ -0.49
CLRN3-201ENST00000368671 TLL1O43897 1013 aa12.02□□□□□ -0.49
CLRN3-201ENST00000368671 PPP1R11O60927 126 aaPredicted RBP12.02□□□□□ -0.49
CLRN3-201ENST00000368671 BAIAP3O94812 1187 aa12.02□□□□□ -0.49
CLRN3-201ENST00000368671 SELPP16109 830 aa12.02□□□□□ -0.49
CLRN3-201ENST00000368671 HOXA13P31271 388 aaPredicted RBP12.02□□□□□ -0.49
CLRN3-201ENST00000368671 HSD17B4P51659 736 aa12.02□□□□□ -0.49
CLRN3-201ENST00000368671 TAP1Q03518 808 aa12.02□□□□□ -0.49
CLRN3-201ENST00000368671 LAMC2Q13753 1193 aa12.02□□□□□ -0.49
CLRN3-201ENST00000368671 SEC23AQ15436 765 aa12.02□□□□□ -0.49
CLRN3-201ENST00000368671 TMCO2Q7Z6W1 182 aaPredicted RBP12.02□□□□□ -0.49
CLRN3-201ENST00000368671 CTAGE1Q96RT6 745 aa12.02□□□□□ -0.49
CLRN3-201ENST00000368671 UHRF1Q96T88 793 aaPredicted RBP12.02□□□□□ -0.49
CLRN3-201ENST00000368671 KATNAL1Q9BW62 490 aa12.02□□□□□ -0.49
CLRN3-201ENST00000368671 GTF2IRD1Q9UHL9 959 aa12.02□□□□□ -0.49
CLRN3-201ENST00000368671 MAD2L2Q9UI95 211 aa12.02□□□□□ -0.49
CLRN3-201ENST00000368671 PCDHA1Q9Y5I3 950 aa12.02□□□□□ -0.49
CLRN3-201ENST00000368671 ZBTB5O15062 677 aa12.01□□□□□ -0.49
CLRN3-201ENST00000368671 CKBP12277 381 aa12.01□□□□□ -0.49
CLRN3-201ENST00000368671 GSPT1P15170 499 aaKnown RBP12.01□□□□□ -0.49
CLRN3-201ENST00000368671 WDR5P61964 334 aaKnown RBP12.01□□□□□ -0.49
CLRN3-201ENST00000368671 TFF2Q03403 129 aa12.01□□□□□ -0.49
CLRN3-201ENST00000368671 TRDNQ13061 729 aa12.01□□□□□ -0.49
CLRN3-201ENST00000368671 GPNMBQ14956 572 aa12.01□□□□□ -0.49
CLRN3-201ENST00000368671 PGM5Q15124 567 aa12.01□□□□□ -0.49
CLRN3-201ENST00000368671 KIAA0753Q2KHM9 967 aa12.01□□□□□ -0.49
CLRN3-201ENST00000368671 KRT40Q6A162 431 aa12.01□□□□□ -0.49
CLRN3-201ENST00000368671 CNKSR3Q6P9H4 555 aa12.01□□□□□ -0.49
CLRN3-201ENST00000368671 PPTC7Q8NI37 304 aa12.01□□□□□ -0.49
CLRN3-201ENST00000368671 PIGSQ96S52 555 aa12.01□□□□□ -0.49
CLRN3-201ENST00000368671 PDCD2LQ9BRP1 358 aa12.01□□□□□ -0.49
CLRN3-201ENST00000368671 ZBED2Q9BTP6 218 aa12.01□□□□□ -0.49
CLRN3-201ENST00000368671 MTCH2Q9Y6C9 303 aa12.01□□□□□ -0.49
CLRN3-201ENST00000368671 ERICH2A1L162 156 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms