RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 BCRP11274 1271 aa21.01■□□□□ 0.95
CLN3-204ENST00000357857 ITGB5P18084 799 aa21.01■□□□□ 0.95
CLN3-204ENST00000357857 ERCC3P19447 782 aa21.01■□□□□ 0.95
CLN3-204ENST00000357857 CCND2P30279 289 aa21.01■□□□□ 0.95
CLN3-204ENST00000357857 ZNF157P51786 506 aaPredicted RBP21.01■□□□□ 0.95
CLN3-204ENST00000357857 SPIRE1Q08AE8 756 aa21.01■□□□□ 0.95
CLN3-204ENST00000357857 SMCR8Q8TEV9 937 aaPredicted RBP21.01■□□□□ 0.95
CLN3-204ENST00000357857 KIAA1217Q5T5P2 1943 aa21■□□□□ 0.95
CLN3-204ENST00000357857 BIN1O00499 593 aa21■□□□□ 0.95
CLN3-204ENST00000357857 KIF3CO14782 793 aa21■□□□□ 0.95
CLN3-204ENST00000357857 SLC26A4O43511 780 aa21■□□□□ 0.95
CLN3-204ENST00000357857 GRB10Q13322 594 aa21■□□□□ 0.95
CLN3-204ENST00000357857 Q3C1V9 767 aa21■□□□□ 0.95
CLN3-204ENST00000357857 LRCH2Q5VUJ6 765 aa21■□□□□ 0.95
CLN3-204ENST00000357857 SAPCD2Q86UD0 394 aa21■□□□□ 0.95
CLN3-204ENST00000357857 SMARCE1Q969G3 411 aa21■□□□□ 0.95
CLN3-204ENST00000357857 PNMA5Q96PV4 448 aa21■□□□□ 0.95
CLN3-204ENST00000357857 NUDT12Q9BQG2 462 aa21■□□□□ 0.95
CLN3-204ENST00000357857 ZNF577Q9BSK1 485 aa21■□□□□ 0.95
CLN3-204ENST00000357857 DNAJC25Q9H1X3 360 aa21■□□□□ 0.95
CLN3-204ENST00000357857 MAGEF1Q9HAY2 307 aa21■□□□□ 0.95
CLN3-204ENST00000357857 JADE2Q9NQC1 790 aa21■□□□□ 0.95
CLN3-204ENST00000357857 VAV3Q9UKW4 847 aa21■□□□□ 0.95
CLN3-204ENST00000357857 ZNFX1Q9P2E3 1918 aaKnown RBP21■□□□□ 0.95
CLN3-204ENST00000357857 A0A087WWV3 80 aa20.99■□□□□ 0.95
CLN3-204ENST00000357857 SMC2O95347 1197 aa20.99■□□□□ 0.95
CLN3-204ENST00000357857 NR3C2P08235 984 aa20.99■□□□□ 0.95
CLN3-204ENST00000357857 NLRP12P59046 1061 aa20.99■□□□□ 0.95
CLN3-204ENST00000357857 ERVK-9P63128 1117 aa20.99■□□□□ 0.95
CLN3-204ENST00000357857 ERVK-24P63145 666 aa20.99■□□□□ 0.95
CLN3-204ENST00000357857 NCAPH2Q6IBW4 605 aa20.99■□□□□ 0.95
CLN3-204ENST00000357857 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.99■□□□□ 0.95
CLN3-204ENST00000357857 FAM43AQ8N2R8 423 aa20.99■□□□□ 0.95
CLN3-204ENST00000357857 SMC1BQ8NDV3 1235 aa20.99■□□□□ 0.95
CLN3-204ENST00000357857 WDR11Q9BZH6 1224 aa20.99■□□□□ 0.95
CLN3-204ENST00000357857 STK24Q9Y6E0 443 aa20.99■□□□□ 0.95
CLN3-204ENST00000357857 KDM3AQ9Y4C1 1321 aa20.99■□□□□ 0.95
CLN3-204ENST00000357857 GTPBP6O43824 516 aaPredicted RBP20.98■□□□□ 0.95
CLN3-204ENST00000357857 PSMD10O75832 226 aa20.98■□□□□ 0.95
CLN3-204ENST00000357857 CAVIN2O95810 425 aa20.98■□□□□ 0.95
CLN3-204ENST00000357857 CCT6AP40227 531 aaKnown RBP20.98■□□□□ 0.95
CLN3-204ENST00000357857 NT5DC1Q5TFE4 455 aa20.98■□□□□ 0.95
CLN3-204ENST00000357857 RGMBQ6NW40 437 aa20.98■□□□□ 0.95
CLN3-204ENST00000357857 VSIG10LQ86VR7 867 aa20.98■□□□□ 0.95
CLN3-204ENST00000357857 DNERQ8NFT8 737 aa20.98■□□□□ 0.95
CLN3-204ENST00000357857 ERMNQ8TAM6 284 aa20.98■□□□□ 0.95
CLN3-204ENST00000357857 FAM200AQ8TCP9 573 aa20.98■□□□□ 0.95
CLN3-204ENST00000357857 LRRC15Q8TF66 581 aa20.98■□□□□ 0.95
CLN3-204ENST00000357857 STAMQ92783 540 aa20.98■□□□□ 0.95
CLN3-204ENST00000357857 KCNH7Q9NS40 1196 aa20.98■□□□□ 0.95
CLN3-204ENST00000357857 STK17AQ9UEE5 414 aa20.98■□□□□ 0.95
CLN3-204ENST00000357857 TESPA1A2RU30 521 aaPredicted RBP20.98■□□□□ 0.95
CLN3-204ENST00000357857 IPO5O00410 1097 aaKnown RBP20.98■□□□□ 0.95
CLN3-204ENST00000357857 GAS7O60861 476 aa20.98■□□□□ 0.95
CLN3-204ENST00000357857 XRCC6P12956 609 aaKnown RBP eCLIP20.98■□□□□ 0.95
CLN3-204ENST00000357857 SARSP49591 514 aaKnown RBP20.98■□□□□ 0.95
CLN3-204ENST00000357857 DPYDQ12882 1025 aa20.98■□□□□ 0.95
CLN3-204ENST00000357857 TMEM119Q4V9L6 283 aa20.98■□□□□ 0.95
CLN3-204ENST00000357857 HYIQ5T013 277 aa20.98■□□□□ 0.95
CLN3-204ENST00000357857 HAUS3Q68CZ6 603 aa20.98■□□□□ 0.95
CLN3-204ENST00000357857 SPATA20Q8TB22 786 aa20.98■□□□□ 0.95
CLN3-204ENST00000357857 MTRQ99707 1265 aa20.98■□□□□ 0.95
CLN3-204ENST00000357857 PTPN18Q99952 460 aa20.98■□□□□ 0.95
CLN3-204ENST00000357857 MROH8Q9H579 483 aa20.98■□□□□ 0.95
CLN3-204ENST00000357857 GCLCP48506 637 aaPredicted RBP20.97■□□□□ 0.95
CLN3-204ENST00000357857 PPP2R5CQ13362 524 aa20.97■□□□□ 0.95
CLN3-204ENST00000357857 MTMR1Q13613 665 aa20.97■□□□□ 0.95
CLN3-204ENST00000357857 C11orf57Q6ZUT1 292 aaPredicted RBP20.97■□□□□ 0.95
CLN3-204ENST00000357857 OTOP1Q7RTM1 612 aa20.97■□□□□ 0.95
CLN3-204ENST00000357857 SHCBP1Q8NEM2 672 aa20.97■□□□□ 0.95
CLN3-204ENST00000357857 PARK7Q99497 189 aaKnown RBP20.97■□□□□ 0.95
CLN3-204ENST00000357857 RIT2Q99578 217 aa20.97■□□□□ 0.95
CLN3-204ENST00000357857 TEKT3Q9BXF9 490 aa20.97■□□□□ 0.95
CLN3-204ENST00000357857 NT5C3AQ9H0P0 336 aa20.97■□□□□ 0.95
CLN3-204ENST00000357857 KBTBD4Q9NVX7 518 aa20.97■□□□□ 0.95
CLN3-204ENST00000357857 MAN1B1Q9UKM7 699 aa20.97■□□□□ 0.95
CLN3-204ENST00000357857 MANSC4A6NHS7 340 aaPredicted RBP20.96■□□□□ 0.95
CLN3-204ENST00000357857 POTEB2H3BUK9 544 aa20.96■□□□□ 0.95
CLN3-204ENST00000357857 CASP1P29466 404 aa20.96■□□□□ 0.95
CLN3-204ENST00000357857 CNTN2Q02246 1040 aa20.96■□□□□ 0.95
CLN3-204ENST00000357857 ISM2Q6H9L7 571 aa20.96■□□□□ 0.95
CLN3-204ENST00000357857 GPRC5AQ8NFJ5 357 aa20.96■□□□□ 0.95
CLN3-204ENST00000357857 IWS1Q96ST2 819 aa20.96■□□□□ 0.95
CLN3-204ENST00000357857 R3HDMLQ9H3Y0 253 aa20.96■□□□□ 0.95
CLN3-204ENST00000357857 AGO4Q9HCK5 861 aaKnown RBP20.96■□□□□ 0.95
CLN3-204ENST00000357857 TLL2Q9Y6L7 1015 aa20.96■□□□□ 0.95
CLN3-204ENST00000357857 ZNF165P49910 485 aa20.95■□□□□ 0.94
CLN3-204ENST00000357857 CCNA1P78396 465 aa20.95■□□□□ 0.94
CLN3-204ENST00000357857 ECM1Q16610 540 aa20.95■□□□□ 0.94
CLN3-204ENST00000357857 DPCR1Q3MIW9 517 aa20.95■□□□□ 0.94
CLN3-204ENST00000357857 NLRX1Q86UT6 975 aa20.95■□□□□ 0.94
CLN3-204ENST00000357857 TRIML1Q8N9V2 468 aa20.95■□□□□ 0.94
CLN3-204ENST00000357857 BLZF1Q9H2G9 400 aa20.95■□□□□ 0.94
CLN3-204ENST00000357857 CBX8Q9HC52 389 aa20.95■□□□□ 0.94
CLN3-204ENST00000357857 BLOC1S4Q9NUP1 217 aa20.95■□□□□ 0.94
CLN3-204ENST00000357857 PLXNB2O15031 1838 aa20.95■□□□□ 0.94
CLN3-204ENST00000357857 STAM2O75886 525 aa20.95■□□□□ 0.94
CLN3-204ENST00000357857 MYL1P05976 194 aa20.95■□□□□ 0.94
CLN3-204ENST00000357857 CUL4BQ13620 913 aa20.95■□□□□ 0.94
CLN3-204ENST00000357857 UVSSAQ2YD98 709 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms