RNA–Protein interactions for RNA: ENST00000346436.10

CLCN6-202, Transcript of chloride voltage-gated channel 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN6, Length 5,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN6-202ENST00000346436 USP17L10C9JJH3 530 aa11.9□□□□□ -0.5
CLCN6-202ENST00000346436 INO80B-WBP1J3KQ70 363 aa11.9□□□□□ -0.5
CLCN6-202ENST00000346436 MRPS25P82663 173 aaKnown RBP11.9□□□□□ -0.5
CLCN6-202ENST00000346436 CCZ1BP86790 482 aa11.9□□□□□ -0.5
CLCN6-202ENST00000346436 CCZ1P86791 482 aaPredicted RBP11.9□□□□□ -0.5
CLCN6-202ENST00000346436 IFRD2Q12894 506 aaPredicted RBP11.9□□□□□ -0.5
CLCN6-202ENST00000346436 LONRF2Q1L5Z9 754 aa11.9□□□□□ -0.5
CLCN6-202ENST00000346436 SUSD4Q5VX71 490 aa11.9□□□□□ -0.5
CLCN6-202ENST00000346436 ARHGEF1Q92888 912 aaKnown RBP11.9□□□□□ -0.5
CLCN6-202ENST00000346436 PAGE5Q96GU1 130 aa11.9□□□□□ -0.5
CLCN6-202ENST00000346436 DDX23Q9BUQ8 820 aaKnown RBP11.9□□□□□ -0.5
CLCN6-202ENST00000346436 SNX25Q9H3E2 840 aa11.9□□□□□ -0.5
CLCN6-202ENST00000346436 POLIQ9UNA4 740 aa11.9□□□□□ -0.5
CLCN6-202ENST00000346436 EPN1Q9Y6I3 576 aaPredicted RBP11.9□□□□□ -0.5
CLCN6-202ENST00000346436 MAP3K7O43318 606 aa11.9□□□□□ -0.5
CLCN6-202ENST00000346436 NMT2O60551 498 aa11.9□□□□□ -0.5
CLCN6-202ENST00000346436 PSAPP07602 524 aa11.9□□□□□ -0.5
CLCN6-202ENST00000346436 FDPSP14324 419 aaKnown RBP11.9□□□□□ -0.5
CLCN6-202ENST00000346436 ERCC5P28715 1186 aaPredicted RBP11.9□□□□□ -0.5
CLCN6-202ENST00000346436 CRKP46108 304 aa11.9□□□□□ -0.5
CLCN6-202ENST00000346436 NCAPD2Q15021 1401 aa11.9□□□□□ -0.5
CLCN6-202ENST00000346436 RUFY4Q6ZNE9 571 aa11.9□□□□□ -0.5
CLCN6-202ENST00000346436 USP32Q8NFA0 1604 aa11.9□□□□□ -0.51
CLCN6-202ENST00000346436 PTPRUQ92729 1446 aa11.89□□□□□ -0.51
CLCN6-202ENST00000346436 UBN2Q6ZU65 1347 aa11.89□□□□□ -0.51
CLCN6-202ENST00000346436 GTPBP6O43824 516 aaPredicted RBP11.89□□□□□ -0.51
CLCN6-202ENST00000346436 PNMA6AP0CW24 399 aaPredicted RBP11.89□□□□□ -0.51
CLCN6-202ENST00000346436 SYDE2Q5VT97 1194 aa11.89□□□□□ -0.51
CLCN6-202ENST00000346436 MMP19Q99542 508 aa11.89□□□□□ -0.51
CLCN6-202ENST00000346436 TSGA10Q9BZW7 698 aa11.89□□□□□ -0.51
CLCN6-202ENST00000346436 STMN4Q9H169 189 aaPredicted RBP11.89□□□□□ -0.51
CLCN6-202ENST00000346436 ALDH8A1Q9H2A2 487 aaPredicted RBP11.89□□□□□ -0.51
CLCN6-202ENST00000346436 UBE2Q2LH0YL09 131 aa11.89□□□□□ -0.51
CLCN6-202ENST00000346436 BARGINQ6ZT62 677 aa11.89□□□□□ -0.51
CLCN6-202ENST00000346436 SPICE1Q8N0Z3 855 aa11.89□□□□□ -0.51
CLCN6-202ENST00000346436 UBLCP1Q8WVY7 318 aaPredicted RBP11.89□□□□□ -0.51
CLCN6-202ENST00000346436 LY9Q9HBG7 655 aa11.89□□□□□ -0.51
CLCN6-202ENST00000346436 ZCCHC17Q9NP64 241 aaKnown RBP11.89□□□□□ -0.51
CLCN6-202ENST00000346436 DDX41Q9UJV9 622 aaKnown RBP11.89□□□□□ -0.51
CLCN6-202ENST00000346436 ARPP19P56211 112 aa11.89□□□□□ -0.51
CLCN6-202ENST00000346436 MICALCLQ6ZW33 695 aa11.89□□□□□ -0.51
CLCN6-202ENST00000346436 TCP11Q8WWU5 503 aa11.89□□□□□ -0.51
CLCN6-202ENST00000346436 DYNLL2Q96FJ2 89 aa11.89□□□□□ -0.51
CLCN6-202ENST00000346436 ANKRD36BP1Q96IX9 119 aa11.89□□□□□ -0.51
CLCN6-202ENST00000346436 CDC23Q9UJX2 597 aa11.89□□□□□ -0.51
CLCN6-202ENST00000346436 TEX33O43247 280 aa11.89□□□□□ -0.51
CLCN6-202ENST00000346436 MTF1Q14872 753 aa11.89□□□□□ -0.51
CLCN6-202ENST00000346436 BRD3Q15059 726 aa11.89□□□□□ -0.51
CLCN6-202ENST00000346436 THEM5Q8N1Q8 247 aa11.89□□□□□ -0.51
CLCN6-202ENST00000346436 SRPRBQ9Y5M8 271 aaKnown RBP11.89□□□□□ -0.51
CLCN6-202ENST00000346436 SLFN14P0C7P3 912 aa11.89□□□□□ -0.51
CLCN6-202ENST00000346436 RABL6Q3YEC7 729 aaPredicted RBP11.89□□□□□ -0.51
CLCN6-202ENST00000346436 E4F1Q66K89 784 aaPredicted RBP11.89□□□□□ -0.51
CLCN6-202ENST00000346436 AFAP1L2Q8N4X5 818 aa11.89□□□□□ -0.51
CLCN6-202ENST00000346436 ENOX1Q8TC92 643 aaKnown RBP11.89□□□□□ -0.51
CLCN6-202ENST00000346436 RNF26Q9BY78 433 aaPredicted RBP11.89□□□□□ -0.51
CLCN6-202ENST00000346436 KCNQ2O43526 872 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 RFX5P48382 616 aaPredicted RBP11.88□□□□□ -0.51
CLCN6-202ENST00000346436 STXBP2Q15833 593 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 C6orf163Q5TEZ5 329 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 NDUFAF2Q8N183 169 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 IRX2Q9BZI1 471 aaPredicted RBP11.88□□□□□ -0.51
CLCN6-202ENST00000346436 GDAQ9Y2T3 454 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 SPOPO43791 374 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 GMNNO75496 209 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 GUCY2FP51841 1108 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 TRIM50Q86XT4 487 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 MICALL2Q8IY33 904 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 NAP1L3Q99457 506 aaPredicted RBP11.88□□□□□ -0.51
CLCN6-202ENST00000346436 SELENOSQ9BQE4 189 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 CNOT7Q9UIV1 285 aaKnown RBP11.88□□□□□ -0.51
CLCN6-202ENST00000346436 PXDNLA1KZ92 1463 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 FAM205CA6NFA0 338 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 ALDH3A1P30838 453 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 NFX1Q12986 1120 aaKnown RBP11.88□□□□□ -0.51
CLCN6-202ENST00000346436 TTC31Q49AM3 519 aaPredicted RBP11.88□□□□□ -0.51
CLCN6-202ENST00000346436 FUCA2Q9BTY2 467 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 IFT122Q9HBG6 1241 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 TMEM131LA2VDJ0 1609 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 USP17L15C9J2P7 530 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 USP17L13C9JLJ4 530 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 USP17L11C9JVI0 530 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 USP17L18D6R9N7 530 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 USP17L22D6RA61 530 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 USP17L17D6RBQ6 530 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 USP17L19D6RCP7 530 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 USP17L20D6RJB6 530 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 SORBS3O60504 671 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 TUBB4BP68371 445 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 USP17L24Q0WX57 530 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 SURF1Q15526 300 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 RNF219Q5W0B1 726 aaPredicted RBP11.88□□□□□ -0.51
CLCN6-202ENST00000346436 SMC1BQ8NDV3 1235 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 RABGGTAQ92696 567 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 GSDMAQ96QA5 445 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 OSBPL5Q9H0X9 879 aaPredicted RBP11.88□□□□□ -0.51
CLCN6-202ENST00000346436 CPSF3Q9UKF6 684 aaKnown RBP11.88□□□□□ -0.51
CLCN6-202ENST00000346436 PCDHA12Q9UN75 941 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 CEMIPQ8WUJ3 1361 aa11.88□□□□□ -0.51
CLCN6-202ENST00000346436 GNA14O95837 355 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms