RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 MKRN4PQ13434 485 aaPredicted RBP13.62□□□□□ -0.23
SNRNP48-201ENST00000342415 WDR78Q5VTH9 848 aa13.62□□□□□ -0.23
SNRNP48-201ENST00000342415 DPH6Q7L8W6 267 aa13.62□□□□□ -0.23
SNRNP48-201ENST00000342415 ADGRA1Q86SQ6 560 aa13.62□□□□□ -0.23
SNRNP48-201ENST00000342415 TAB3Q8N5C8 712 aaPredicted RBP13.62□□□□□ -0.23
SNRNP48-201ENST00000342415 TCP11Q8WWU5 503 aa13.62□□□□□ -0.23
SNRNP48-201ENST00000342415 CCDC127Q96BQ5 260 aa13.62□□□□□ -0.23
SNRNP48-201ENST00000342415 DMGDHQ9UI17 866 aaKnown RBP13.62□□□□□ -0.23
SNRNP48-201ENST00000342415 MTUS1Q9ULD2 1270 aa13.62□□□□□ -0.23
SNRNP48-201ENST00000342415 CACNB3P54284 484 aa13.62□□□□□ -0.23
SNRNP48-201ENST00000342415 DENND2CQ68D51 928 aa13.62□□□□□ -0.23
SNRNP48-201ENST00000342415 DNAAF5Q86Y56 855 aa13.62□□□□□ -0.23
SNRNP48-201ENST00000342415 AK8Q96MA6 479 aa13.62□□□□□ -0.23
SNRNP48-201ENST00000342415 PLVAPQ9BX97 442 aa13.62□□□□□ -0.23
SNRNP48-201ENST00000342415 DIP2AQ14689 1571 aa13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 PMS1P54277 932 aaKnown RBP13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 MESDQ14696 234 aa13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 ALKBH5Q6P6C2 394 aaKnown RBP13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 FBF1Q8TES7 1133 aa13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 TCHPQ9BT92 498 aa13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 NUCKS1Q9H1E3 243 aaKnown RBP13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 PLAAQ9Y263 795 aa13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 MYO5BQ9ULV0 1848 aa13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 KLRK1P26718 216 aa13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 PRPHP41219 470 aa13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 ZKSCAN8Q15776 578 aaPredicted RBP13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 FAM83BQ5T0W9 1011 aa13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 NBPF3Q9H094 633 aa13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 ARHGEF35A5YM69 484 aa13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 CTNND1O60716 968 aaKnown RBP13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 CLNS1AP54105 237 aaKnown RBP13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 UAP1Q16222 522 aaPredicted RBP13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 GKAP1Q5VSY0 366 aaPredicted RBP13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 RSRC2Q7L4I2 434 aaKnown RBP13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 DGKHQ86XP1 1220 aa13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 OR2W6PQ8NHA6 318 aa13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 CDHR2Q9BYE9 1310 aa13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 ZRANB2O95218 330 aaKnown RBP eCLIP13.61□□□□□ -0.233e-7■■■■□ 25.7
SNRNP48-201ENST00000342415 PCP11498 1178 aaKnown RBP13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 CCNI2Q6ZMN8 369 aaPredicted RBP13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 CEP95Q96GE4 821 aa13.61□□□□□ -0.23
SNRNP48-201ENST00000342415 SF3B2Q13435 895 aaKnown RBP13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 ICE2Q659A1 982 aa13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 GALNT17Q6IS24 598 aa13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 CUEDC2Q9H467 287 aa13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 BSDC1Q9NW68 430 aaPredicted RBP13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 SNX12Q9UMY4 172 aa13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 KDM6AO15550 1401 aaPredicted RBP13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 SORBS3O60504 671 aa13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 SEC24CP53992 1094 aa13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 PCIF1Q9H4Z3 704 aa13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 HPCAL4Q9UM19 191 aa13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 PLA2G4BP0C869 781 aa13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 CARSP49589 748 aaKnown RBP13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 ZBTB16Q05516 673 aa13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 ACTN3Q08043 901 aaPredicted RBP13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 ZNF211Q13398 564 aaPredicted RBP13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 BIRC3Q13489 604 aa13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 CCDC6Q16204 474 aa13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 DDX42Q86XP3 938 aaKnown RBP eCLIP13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 NKX2-3Q8TAU0 364 aa13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 KIFC2Q96AC6 838 aa13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 RBM12Q9NTZ6 932 aaKnown RBP13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 PCDHA6Q9UN73 950 aa13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 PCDHA8Q9Y5H6 950 aa13.6□□□□□ -0.23
SNRNP48-201ENST00000342415 POTEB3A0JP26 581 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 POTECB2RU33 542 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 HOXA13P31271 388 aaPredicted RBP13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 POTEBQ6S5H4 581 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 PPM1KQ8N3J5 372 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 PIGOQ8TEQ8 1089 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 MAGOHBQ96A72 148 aaKnown RBP13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 CCDC77Q9BR77 488 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 EHD4Q9H223 541 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 HDAC9Q9UKV0 1011 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 CAPN6Q9Y6Q1 641 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 PNPLA7Q6ZV29 1317 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 NPHP3-ACAD11A0A0J9YXS1 232 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 LAD1O00515 517 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 STAT3P40763 770 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 SNX1Q13596 522 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 EMBQ6PCB8 327 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 OTUD6AQ7L8S5 288 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 NSUN4Q96CB9 384 aaKnown RBP13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 BHMT2Q9H2M3 363 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 MLXIPLQ9NP71 852 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 WNT7AO00755 349 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 EVX2Q03828 476 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 FAM178BQ8IXR5 827 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 UBL4BQ8N7F7 174 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 HDAC7Q8WUI4 952 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 GCNT4Q9P109 453 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 ITSN1Q15811 1721 aa13.59□□□□□ -0.23
SNRNP48-201ENST00000342415 A6NNZ2 444 aa13.58□□□□□ -0.23
SNRNP48-201ENST00000342415 PGRMC1O00264 195 aaKnown RBP13.58□□□□□ -0.23
SNRNP48-201ENST00000342415 TUBB8Q3ZCM7 444 aa13.58□□□□□ -0.23
SNRNP48-201ENST00000342415 FAM133BQ5BKY9 247 aaKnown RBP13.58□□□□□ -0.23
SNRNP48-201ENST00000342415 NAP1L3Q99457 506 aaPredicted RBP13.58□□□□□ -0.23
SNRNP48-201ENST00000342415 DIP2BQ9P265 1576 aa13.58□□□□□ -0.24
SNRNP48-201ENST00000342415 MEGF6O75095 1541 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms