RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 CTNND2Q9UQB3 1225 aa20.65■□□□□ 0.9
USP39-201ENST00000323701 TRAF5O00463 557 aa20.65■□□□□ 0.9
USP39-201ENST00000323701 ZNF18P17022 549 aa20.65■□□□□ 0.9
USP39-201ENST00000323701 PSMC6P62333 389 aa20.65■□□□□ 0.9
USP39-201ENST00000323701 MRPS9P82933 396 aaKnown RBP20.65■□□□□ 0.9
USP39-201ENST00000323701 TTLL12Q14166 644 aaPredicted RBP20.65■□□□□ 0.9
USP39-201ENST00000323701 PTPN21Q16825 1174 aa20.65■□□□□ 0.9
USP39-201ENST00000323701 SV2BQ7L1I2 683 aa20.65■□□□□ 0.9
USP39-201ENST00000323701 DYMQ7RTS9 669 aa20.65■□□□□ 0.9
USP39-201ENST00000323701 MCF2L2Q86YR7 1114 aa20.65■□□□□ 0.9
USP39-201ENST00000323701 RBM46Q8TBY0 533 aaKnown RBP20.65■□□□□ 0.9
USP39-201ENST00000323701 ZC3H4Q9UPT8 1303 aaKnown RBP20.65■□□□□ 0.9
USP39-201ENST00000323701 SCN4AP35499 1836 aa20.64■□□□□ 0.89
USP39-201ENST00000323701 PSMD10O75832 226 aa20.64■□□□□ 0.89
USP39-201ENST00000323701 RHOBTB3O94955 611 aa20.64■□□□□ 0.89
USP39-201ENST00000323701 MYL1P05976 194 aa20.64■□□□□ 0.89
USP39-201ENST00000323701 FCER1AP12319 257 aa20.64■□□□□ 0.89
USP39-201ENST00000323701 ASIC1P78348 528 aa20.64■□□□□ 0.89
USP39-201ENST00000323701 KCNB1Q14721 858 aa20.64■□□□□ 0.89
USP39-201ENST00000323701 NAP1L5Q96NT1 182 aaPredicted RBP20.64■□□□□ 0.89
USP39-201ENST00000323701 KCNF1Q9H3M0 494 aa20.64■□□□□ 0.89
USP39-201ENST00000323701 EIF2AK2P19525 551 aaKnown RBP20.63■□□□□ 0.89
USP39-201ENST00000323701 STK4Q13043 487 aa20.63■□□□□ 0.89
USP39-201ENST00000323701 BAATQ14032 418 aaPredicted RBP20.63■□□□□ 0.89
USP39-201ENST00000323701 MAP1SQ66K74 1059 aaPredicted RBP20.63■□□□□ 0.89
USP39-201ENST00000323701 OTOP1Q7RTM1 612 aa20.63■□□□□ 0.89
USP39-201ENST00000323701 DRC7Q8IY82 874 aa20.63■□□□□ 0.89
USP39-201ENST00000323701 SLC5A5Q92911 643 aa20.63■□□□□ 0.89
USP39-201ENST00000323701 WDR11Q9BZH6 1224 aa20.63■□□□□ 0.89
USP39-201ENST00000323701 FDX1P10109 184 aa20.63■□□□□ 0.89
USP39-201ENST00000323701 PTGS1P23219 599 aa20.63■□□□□ 0.89
USP39-201ENST00000323701 CYP4A11Q02928 519 aa20.63■□□□□ 0.89
USP39-201ENST00000323701 RNF207Q6ZRF8 634 aa20.63■□□□□ 0.89
USP39-201ENST00000323701 ZSCAN30Q86W11 494 aa20.63■□□□□ 0.89
USP39-201ENST00000323701 ANKRD13AQ8IZ07 590 aa20.63■□□□□ 0.89
USP39-201ENST00000323701 RMND1Q9NWS8 449 aa20.63■□□□□ 0.89
USP39-201ENST00000323701 RGL1Q9NZL6 768 aa20.63■□□□□ 0.89
USP39-201ENST00000323701 SYNRGQ9UMZ2 1314 aa20.63■□□□□ 0.89
USP39-201ENST00000323701 CDC25BP30305 580 aa20.62■□□□□ 0.89
USP39-201ENST00000323701 PMS1P54277 932 aaKnown RBP20.62■□□□□ 0.89
USP39-201ENST00000323701 LRCH2Q5VUJ6 765 aa20.62■□□□□ 0.89
USP39-201ENST00000323701 CCDC186Q7Z3E2 898 aa20.62■□□□□ 0.89
USP39-201ENST00000323701 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.62■□□□□ 0.89
USP39-201ENST00000323701 MXRA8Q9BRK3 442 aa20.62■□□□□ 0.89
USP39-201ENST00000323701 INTS13Q9NVM9 706 aa20.62■□□□□ 0.89
USP39-201ENST00000323701 PKD2L1Q9P0L9 805 aa20.62■□□□□ 0.89
USP39-201ENST00000323701 RBBP6Q7Z6E9 1792 aaKnown RBP20.62■□□□□ 0.89
USP39-201ENST00000323701 FRMPD4Q14CM0 1322 aa20.62■□□□□ 0.89
USP39-201ENST00000323701 IQCA1LA6NCM1 817 aa20.62■□□□□ 0.89
USP39-201ENST00000323701 CHMP2AO43633 222 aa20.62■□□□□ 0.89
USP39-201ENST00000323701 PPATQ06203 517 aa20.62■□□□□ 0.89
USP39-201ENST00000323701 PLS1Q14651 629 aa20.62■□□□□ 0.89
USP39-201ENST00000323701 ARID5BQ14865 1188 aa20.62■□□□□ 0.89
USP39-201ENST00000323701 GADL1Q6ZQY3 521 aa20.62■□□□□ 0.89
USP39-201ENST00000323701 ADSSL1Q8N142 457 aa20.62■□□□□ 0.89
USP39-201ENST00000323701 GIMAP8Q8ND71 665 aaPredicted RBP20.62■□□□□ 0.89
USP39-201ENST00000323701 DDX12PQ92771 950 aa20.62■□□□□ 0.89
USP39-201ENST00000323701 EHMT1Q9H9B1 1298 aa20.62■□□□□ 0.89
USP39-201ENST00000323701 HOXC10Q9NYD6 342 aa20.62■□□□□ 0.89
USP39-201ENST00000323701 ZKSCAN5Q9Y2L8 839 aa20.62■□□□□ 0.89
USP39-201ENST00000323701 A0A0G2JLL6 359 aaPredicted RBP20.61■□□□□ 0.89
USP39-201ENST00000323701 NPHP3-ACAD11A0A0J9YXS1 232 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 TRIM49BA6NDI0 452 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 SPDYE5A6NIY4 337 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 NF2P35240 595 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 OAZ1P54368 228 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 PDE4DQ08499 809 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 PGM5Q15124 567 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 PRRT2Q7Z6L0 340 aaPredicted RBP20.61■□□□□ 0.89
USP39-201ENST00000323701 ERO1BQ86YB8 467 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 RMDN3Q96TC7 470 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 R3HDMLQ9H3Y0 253 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 KCNH7Q9NS40 1196 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 ATP2A1O14983 1001 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 RPA1P27694 616 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 GJA5P36382 358 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 TPM4P67936 248 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 AMPD3Q01432 767 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 MOGSQ13724 837 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 SPATA1Q5VX52 437 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 KIAA0895Q8NCT3 520 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 NELFBQ8WX92 580 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 DNAJC19Q96DA6 116 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 EIF2AK1Q9BQI3 630 aaKnown RBP20.61■□□□□ 0.89
USP39-201ENST00000323701 ZNF577Q9BSK1 485 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 TEX13BQ9BXU2 312 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 PXMP2Q9NR77 195 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 BTBD7Q9P203 1132 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 CLEC11AQ9Y240 323 aa20.61■□□□□ 0.89
USP39-201ENST00000323701 KDM3AQ9Y4C1 1321 aa20.6■□□□□ 0.89
USP39-201ENST00000323701 IPO5O00410 1097 aaKnown RBP20.6■□□□□ 0.89
USP39-201ENST00000323701 SSBP05455 408 aaKnown RBP eCLIP20.6■□□□□ 0.89
USP39-201ENST00000323701 PCNX4Q63HM2 1172 aa20.6■□□□□ 0.89
USP39-201ENST00000323701 GLIS3Q8NEA6 775 aa20.6■□□□□ 0.89
USP39-201ENST00000323701 OPTNQ96CV9 577 aa20.6■□□□□ 0.89
USP39-201ENST00000323701 PDCD2LQ9BRP1 358 aa20.6■□□□□ 0.89
USP39-201ENST00000323701 NT5C3AQ9H0P0 336 aa20.6■□□□□ 0.89
USP39-201ENST00000323701 PLA2G4BP0C869 781 aa20.59■□□□□ 0.89
USP39-201ENST00000323701 CACNB1Q02641 598 aaPredicted RBP20.59■□□□□ 0.89
USP39-201ENST00000323701 PAK1Q13153 545 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms