RNA–Protein interactions for RNA: ENST00000318023.11

CAPN3-201, Transcript of calpain 3, humanhuman

TSL 5 BASIC

Gene CAPN3, Length 3,172 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-201ENST00000318023 TRIM74Q86UV6 250 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 TRIM73Q86UV7 250 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 PARP9Q8IXQ6 854 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 LRRC47Q8N1G4 583 aaKnown RBP10.42□□□□□ -0.74
CAPN3-201ENST00000318023 SAAL1Q96ER3 474 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 FAM210AQ96ND0 272 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 NACAP1Q9BZK3 213 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 TM6SF1Q9BZW5 370 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 YIPF3Q9GZM5 350 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 VIPAS39Q9H9C1 493 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 STX8Q9UNK0 236 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 CCDC85CA6NKD9 419 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 USP17L5A8MUK1 530 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 ARHGAP25P42331 645 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 MCMDC2Q4G0Z9 681 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 CYB5D1Q6P9G0 228 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 ANKRD13CQ8N6S4 541 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 ZNF280CQ8ND82 737 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 CD99L2Q8TCZ2 262 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 BPIFA3Q9BQP9 254 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.42□□□□□ -0.74
CAPN3-201ENST00000318023 HAUS2Q9NVX0 235 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 TPX2Q9ULW0 747 aaKnown RBP10.42□□□□□ -0.74
CAPN3-201ENST00000318023 TRIM17Q9Y577 477 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 ZNF646O15015 1829 aaPredicted RBP10.41□□□□□ -0.74
CAPN3-201ENST00000318023 NEDD4P46934 1319 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 CBFA2T2O43439 604 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 ATP2C2O75185 946 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 ZFYP08048 801 aaPredicted RBP10.41□□□□□ -0.74
CAPN3-201ENST00000318023 CETPP11597 493 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 PECAM1P16284 738 aaPredicted RBP10.41□□□□□ -0.74
CAPN3-201ENST00000318023 RAB27AP51159 221 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 NLRP12P59046 1061 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 LONRF3Q496Y0 759 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 C12orf60Q5U649 245 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 CDCA2Q69YH5 1023 aaPredicted RBP10.41□□□□□ -0.74
CAPN3-201ENST00000318023 CCDC148Q8NFR7 591 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 CPLX3Q8WVH0 158 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 CCDC114Q96M63 670 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 LRRC2Q9BYS8 371 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 ATP8A2Q9NTI2 1148 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 RTEL1Q9NZ71 1219 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 EIF4E1BA6NMX2 242 aaKnown RBP10.41□□□□□ -0.74
CAPN3-201ENST00000318023 GPR25O00155 361 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 UPP2O95045 317 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 FGAP02671 866 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 ASNSP08243 561 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 ZBTB48P10074 688 aaPredicted RBP10.41□□□□□ -0.74
CAPN3-201ENST00000318023 CAP1Q01518 475 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 ICA1Q05084 483 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 NECTIN1Q15223 517 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 OTUD7BQ6GQQ9 843 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 CHST3Q7LGC8 479 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 ZNF444Q8N0Y2 327 aaPredicted RBP10.41□□□□□ -0.74
CAPN3-201ENST00000318023 SH2D3CQ8N5H7 860 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 HHIPL1Q96JK4 782 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 SELENOOQ9BVL4 669 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 HERC5Q9UII4 1024 aaKnown RBP10.41□□□□□ -0.74
CAPN3-201ENST00000318023 ATRNL1Q5VV63 1379 aa10.41□□□□□ -0.74
CAPN3-201ENST00000318023 A0A1W2PRG0 241 aa10.4□□□□□ -0.74
CAPN3-201ENST00000318023 HSPD1P10809 573 aaKnown RBP10.4□□□□□ -0.74
CAPN3-201ENST00000318023 PPATQ06203 517 aa10.4□□□□□ -0.74
CAPN3-201ENST00000318023 SPRED3Q2MJR0 410 aa10.4□□□□□ -0.74
CAPN3-201ENST00000318023 KCTD16Q68DU8 428 aa10.4□□□□□ -0.74
CAPN3-201ENST00000318023 RAD9BQ6WBX8 426 aa10.4□□□□□ -0.74
CAPN3-201ENST00000318023 NKX2-3Q8TAU0 364 aa10.4□□□□□ -0.74
CAPN3-201ENST00000318023 TANGO6Q9C0B7 1094 aa10.4□□□□□ -0.74
CAPN3-201ENST00000318023 ATP6V0A4Q9HBG4 840 aa10.4□□□□□ -0.74
CAPN3-201ENST00000318023 TRPM7Q96QT4 1865 aa10.4□□□□□ -0.74
CAPN3-201ENST00000318023 MYL5Q02045 173 aa10.4□□□□□ -0.74
CAPN3-201ENST00000318023 PPIL2Q13356 520 aa10.4□□□□□ -0.74
CAPN3-201ENST00000318023 PLS1Q14651 629 aa10.4□□□□□ -0.74
CAPN3-201ENST00000318023 WDR93Q6P2C0 686 aa10.4□□□□□ -0.74
CAPN3-201ENST00000318023 RSRC1Q96IZ7 334 aaKnown RBP10.4□□□□□ -0.74
CAPN3-201ENST00000318023 SLC39A2Q9NP94 309 aa10.4□□□□□ -0.74
CAPN3-201ENST00000318023 RFX7Q2KHR2 1363 aa10.4□□□□□ -0.74
CAPN3-201ENST00000318023 TSPY2A6NKD2 308 aa10.4□□□□□ -0.75
CAPN3-201ENST00000318023 SLC27A2O14975 620 aa10.4□□□□□ -0.75
CAPN3-201ENST00000318023 KIF4AO95239 1232 aa10.4□□□□□ -0.75
CAPN3-201ENST00000318023 TFAP4Q01664 338 aa10.4□□□□□ -0.75
CAPN3-201ENST00000318023 PPARAQ07869 468 aa10.4□□□□□ -0.75
CAPN3-201ENST00000318023 MYO1EQ12965 1108 aa10.4□□□□□ -0.75
CAPN3-201ENST00000318023 USP4Q13107 963 aa10.4□□□□□ -0.75
CAPN3-201ENST00000318023 IKQ13123 557 aaPredicted RBP10.4□□□□□ -0.75
CAPN3-201ENST00000318023 SF3A1Q15459 793 aaKnown RBP10.4□□□□□ -0.75
CAPN3-201ENST00000318023 PAIP2Q9BPZ3 127 aaKnown RBP10.4□□□□□ -0.75
CAPN3-201ENST00000318023 TMOD4Q9NZQ9 345 aa10.4□□□□□ -0.75
CAPN3-201ENST00000318023 BIN2Q9UBW5 565 aaPredicted RBP10.4□□□□□ -0.75
CAPN3-201ENST00000318023 ZNF112Q9UJU3 913 aa10.4□□□□□ -0.75
CAPN3-201ENST00000318023 AFG3L2Q9Y4W6 797 aa10.4□□□□□ -0.75
CAPN3-201ENST00000318023 USP17L10C9JJH3 530 aa10.39□□□□□ -0.75
CAPN3-201ENST00000318023 FOXP2O15409 715 aa10.39□□□□□ -0.75
CAPN3-201ENST00000318023 FMNL1O95466 1100 aaPredicted RBP10.39□□□□□ -0.75
CAPN3-201ENST00000318023 TSPY3P0CV98 308 aa10.39□□□□□ -0.75
CAPN3-201ENST00000318023 TSPY8P0CW00 308 aa10.39□□□□□ -0.75
CAPN3-201ENST00000318023 SEC24CP53992 1094 aa10.39□□□□□ -0.75
CAPN3-201ENST00000318023 NAA35Q5VZE5 725 aa10.39□□□□□ -0.75
CAPN3-201ENST00000318023 RPUSD2Q8IZ73 545 aaKnown RBP10.39□□□□□ -0.75
CAPN3-201ENST00000318023 ACRBPQ8NEB7 543 aa10.39□□□□□ -0.75
CAPN3-201ENST00000318023 SMARCC2Q8TAQ2 1214 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms