RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 TNFRSF25Q93038 417 aa7.3□□□□□ -1.24
ZNF540-201ENST00000316433 PURBQ96QR8 312 aaKnown RBP7.3□□□□□ -1.24
ZNF540-201ENST00000316433 FAM217BQ9NTX9 383 aaPredicted RBP7.3□□□□□ -1.24
ZNF540-201ENST00000316433 PANK4Q9NVE7 773 aa7.3□□□□□ -1.24
ZNF540-201ENST00000316433 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.3□□□□□ -1.24
ZNF540-201ENST00000316433 SOS2Q07890 1332 aaPredicted RBP7.3□□□□□ -1.24
ZNF540-201ENST00000316433 BCL9O00512 1426 aa7.3□□□□□ -1.24
ZNF540-201ENST00000316433 LTBP1Q14766 1721 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 ZNF804BA4D1E1 1349 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 TMEM232C9JQI7 657 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 FLOT1O75955 427 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 GUCY1B3Q02153 619 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 NNTQ13423 1086 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 ZNF268Q14587 947 aaPredicted RBP7.29□□□□□ -1.24
ZNF540-201ENST00000316433 ZNF394Q53GI3 561 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 SMYD5Q6GMV2 418 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 CEP128Q6ZU80 1094 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 SND1Q7KZF4 910 aaKnown RBP eCLIP7.29□□□□□ -1.24
ZNF540-201ENST00000316433 SESTD1Q86VW0 696 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 WDR66Q8TBY9 1149 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 RAPGEF4Q8WZA2 1011 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 CCT6BQ92526 530 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 TAF4BQ92750 862 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 LY9Q9HBG7 655 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 LUC7LQ9NQ29 371 aaKnown RBP7.29□□□□□ -1.24
ZNF540-201ENST00000316433 SH3GLB2Q9NR46 395 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 CIDEBQ9UHD4 219 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 LEMD3Q9Y2U8 911 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 A0A1W2PQJ5 194 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 ANO9A1A5B4 782 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 CFAP73A6NFT4 308 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 NBPF26B4DH59 902 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 LSM1O15116 133 aaKnown RBP7.29□□□□□ -1.24
ZNF540-201ENST00000316433 PRC1O43663 620 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 HSF2BPO75031 334 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 ZMYND10O75800 440 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 NAT2P11245 290 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 NR1D1P20393 614 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 SP100P23497 879 aaPredicted RBP7.29□□□□□ -1.24
ZNF540-201ENST00000316433 SYKP43405 635 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 AMPD2Q01433 879 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 MECOMQ03112 1051 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 STK38Q15208 465 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 SMUG1Q53HV7 270 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 RC3H1Q5TC82 1133 aaKnown RBP7.29□□□□□ -1.24
ZNF540-201ENST00000316433 NBPF14Q5TI25 921 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 RNF220Q5VTB9 566 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 ARL6IP4Q66PJ3 421 aaKnown RBP7.29□□□□□ -1.24
ZNF540-201ENST00000316433 CCDC102BQ68D86 513 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 KCTD16Q68DU8 428 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 TRIM68Q6AZZ1 485 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 APOA5Q6Q788 366 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 EXOC3L1Q86VI1 746 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 CACNA2D3Q8IZS8 1091 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 RETREG2Q8NC44 543 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 DAGLBQ8NCG7 672 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 KLHDC4Q8TBB5 520 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 OSBP2Q969R2 916 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 DDX27Q96GQ7 796 aaKnown RBP7.29□□□□□ -1.24
ZNF540-201ENST00000316433 FTOQ9C0B1 505 aaKnown RBP eCLIP7.29□□□□□ -1.24
ZNF540-201ENST00000316433 VCX3BQ9H321 246 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 VCX3AQ9NNX9 186 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 TMED5Q9Y3A6 229 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 N6AMT1Q9Y5N5 214 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 ADGRG1Q9Y653 693 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 PSMD14O00487 310 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 LCA5LO95447 670 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 A1BGP04217 495 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 IFIT1P09914 478 aaKnown RBP7.29□□□□□ -1.24
ZNF540-201ENST00000316433 BCRP11274 1271 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 IDO1P14902 403 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 ATP2A2P16615 1042 aaKnown RBP7.29□□□□□ -1.24
ZNF540-201ENST00000316433 HNRNPH3P31942 346 aaKnown RBP7.29□□□□□ -1.24
ZNF540-201ENST00000316433 HOXD12P35452 270 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 CLCN2P51788 898 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 USP46P62068 366 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 MTF1Q14872 753 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 SPATA1Q5VX52 437 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 CNGA4Q8IV77 575 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 BHMTQ93088 406 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 PPP1R14BQ96C90 147 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 SEC16BQ96JE7 1060 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 CUEDC2Q9H467 287 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 POLD4Q9HCU8 107 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.29□□□□□ -1.24
ZNF540-201ENST00000316433 ITGB1BP2Q9UKP3 347 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 AXIN2Q9Y2T1 843 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 CLIC4Q9Y696 253 aa7.29□□□□□ -1.24
ZNF540-201ENST00000316433 KIF28PB7ZC32 967 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 TIMM44O43615 452 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 USO1O60763 962 aaKnown RBP7.28□□□□□ -1.24
ZNF540-201ENST00000316433 DEXIO95424 95 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 GSTA1P08263 222 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 MMEP08473 750 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 ME1P48163 572 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 ADKP55263 362 aaKnown RBP7.28□□□□□ -1.24
ZNF540-201ENST00000316433 NLRP5P59047 1200 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 PLOD1Q02809 727 aaPredicted RBP7.28□□□□□ -1.24
ZNF540-201ENST00000316433 MEA1Q16626 185 aa7.28□□□□□ -1.24
ZNF540-201ENST00000316433 PTPN21Q16825 1174 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms