RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 CYGBQ8WWM9 190 aa9.43□□□□□ -0.9
USF3-201ENST00000316407 CEP55Q53EZ4 464 aa9.43□□□□□ -0.9
USF3-201ENST00000316407 RFX6Q8HWS3 928 aa9.43□□□□□ -0.9
USF3-201ENST00000316407 ZFYVE19Q96K21 471 aa9.43□□□□□ -0.9
USF3-201ENST00000316407 CAPN9O14815 690 aa9.43□□□□□ -0.9
USF3-201ENST00000316407 HSPD1P10809 573 aaKnown RBP9.43□□□□□ -0.9
USF3-201ENST00000316407 ACTN1P12814 892 aa9.43□□□□□ -0.9
USF3-201ENST00000316407 MYH7P12883 1935 aa9.43□□□□□ -0.9
USF3-201ENST00000316407 NOP14P78316 857 aaKnown RBP9.43□□□□□ -0.9
USF3-201ENST00000316407 YWHAHQ04917 246 aaPredicted RBP9.43□□□□□ -0.9
USF3-201ENST00000316407 KCNA1Q09470 495 aa9.43□□□□□ -0.9
USF3-201ENST00000316407 C1orf112Q9NSG2 853 aa9.43□□□□□ -0.9
USF3-201ENST00000316407 RAPGEF3O95398 923 aa9.43□□□□□ -0.9
USF3-201ENST00000316407 ABL1P00519 1130 aa9.43□□□□□ -0.9
USF3-201ENST00000316407 MYBL1P10243 752 aa9.43□□□□□ -0.9
USF3-201ENST00000316407 SLC26A7Q8TE54 656 aa9.43□□□□□ -0.9
USF3-201ENST00000316407 ACSBG1Q96GR2 724 aa9.43□□□□□ -0.9
USF3-201ENST00000316407 SCG2P13521 617 aa9.43□□□□□ -0.9
USF3-201ENST00000316407 MRPL12P52815 198 aaKnown RBP9.43□□□□□ -0.9
USF3-201ENST00000316407 TIMM10P62072 90 aa9.43□□□□□ -0.9
USF3-201ENST00000316407 IQCDQ96DY2 449 aa9.43□□□□□ -0.9
USF3-201ENST00000316407 SH3GL1Q99961 368 aa9.43□□□□□ -0.9
USF3-201ENST00000316407 ANGPTL3Q9Y5C1 460 aa9.43□□□□□ -0.9
USF3-201ENST00000316407 FGGP02679 453 aa9.43□□□□□ -0.9
USF3-201ENST00000316407 EIF4A3P38919 411 aaKnown RBP9.43□□□□□ -0.9
USF3-201ENST00000316407 CAPRIN1Q14444 709 aaKnown RBP9.43□□□□□ -0.9
USF3-201ENST00000316407 SLC9A5Q14940 896 aa9.43□□□□□ -0.9
USF3-201ENST00000316407 CFAP43Q8NDM7 1665 aa9.43□□□□□ -0.9
USF3-201ENST00000316407 A0A0D9SFI3 127 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 TNNI3KQ59H18 835 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 SPATA1Q5VX52 437 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 CYFIP2Q96F07 1278 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 FPGT-TNNI3KV9GXZ4 949 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 NLRP14Q86W24 1093 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 MED10Q9BTT4 135 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 STOML1Q9UBI4 398 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 MKL2Q9ULH7 1088 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 FRMPD2Q68DX3 1309 aaPredicted RBP9.42□□□□□ -0.9
USF3-201ENST00000316407 A6NJR5 290 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 MAP4P27816 1152 aaKnown RBP9.42□□□□□ -0.9
USF3-201ENST00000316407 ATXN3P54252 364 aaPredicted RBP9.42□□□□□ -0.9
USF3-201ENST00000316407 ADAM9Q13443 819 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 PRPSAP1Q14558 356 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 SH3GL2Q99962 352 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 H0YC42 278 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 GCFC2P16383 781 aaKnown RBP9.42□□□□□ -0.9
USF3-201ENST00000316407 LRRC14Q15048 493 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 EAPPQ56P03 285 aaPredicted RBP9.42□□□□□ -0.9
USF3-201ENST00000316407 TRIM67Q6ZTA4 783 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 HEATR4Q86WZ0 1026 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 EDC3Q96F86 508 aaKnown RBP9.42□□□□□ -0.9
USF3-201ENST00000316407 CALN1Q9BXU9 219 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 GFPT2O94808 682 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 KRT1P04264 644 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 ADCY2Q08462 1091 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 RYBPQ8N488 228 aaPredicted RBP9.42□□□□□ -0.9
USF3-201ENST00000316407 PCDHA13Q9Y5I0 950 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 TMEM232C9JQI7 657 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 TAF5LO75529 589 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 CUL3Q13618 768 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 ARL8AQ96BM9 186 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 BRD8Q9H0E9 1235 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 UBAP1Q9NZ09 502 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 GCC2Q8IWJ2 1684 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 CFAP69A5D8W1 941 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 MYO1FO00160 1098 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 NDUFA10O95299 355 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 IQCB1Q15051 598 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 ACBD5Q5T8D3 534 aaPredicted RBP9.42□□□□□ -0.9
USF3-201ENST00000316407 DEPDC1Q5TB30 811 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 ZNF513Q8N8E2 541 aaPredicted RBP9.42□□□□□ -0.9
USF3-201ENST00000316407 ARL10Q8N8L6 244 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 EHD2Q9NZN4 543 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 NBPF26B4DH59 902 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 FAM47AQ5JRC9 791 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 NFRKBQ6P4R8 1299 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 DARS2Q6PI48 645 aaKnown RBP9.42□□□□□ -0.9
USF3-201ENST00000316407 CRLF3Q8IUI8 442 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 NBPF15Q8N660 670 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 DBNDD2Q9BQY9 259 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 TRIM15Q9C019 465 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 PPIP5K1Q6PFW1 1433 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 SOX11P35716 441 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 LAMB3Q13751 1172 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 RAB44Q7Z6P3 723 aaPredicted RBP9.42□□□□□ -0.9
USF3-201ENST00000316407 KCTD6Q8NC69 237 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 TRIM55Q9BYV6 548 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 CD248Q9HCU0 757 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 SAMSN1Q9NSI8 373 aaKnown RBP9.42□□□□□ -0.9
USF3-201ENST00000316407 IQGAP2Q13576 1575 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 HSPA4LO95757 839 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 RFC4P35249 363 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 SERPINB4P48594 390 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 TBL3Q12788 808 aaKnown RBP9.42□□□□□ -0.9
USF3-201ENST00000316407 NONOQ15233 471 aaKnown RBP eCLIP9.42□□□□□ -0.9
USF3-201ENST00000316407 TRIM60Q495X7 471 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 NFATC2IPQ8NCF5 419 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 PAWRQ96IZ0 340 aaKnown RBP9.42□□□□□ -0.9
USF3-201ENST00000316407 RNPEPQ9H4A4 650 aa9.42□□□□□ -0.9
USF3-201ENST00000316407 MAPK4P31152 587 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms