RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 MRVI1Q9Y6F6 885 aa11.27□□□□□ -0.61
VPS41-201ENST00000265745 SLC27A2O14975 620 aa11.26□□□□□ -0.61
VPS41-201ENST00000265745 MYCLP12524 364 aaPredicted RBP11.26□□□□□ -0.61
VPS41-201ENST00000265745 SMARCA1P28370 1054 aa11.26□□□□□ -0.61
VPS41-201ENST00000265745 MCM5P33992 734 aa11.26□□□□□ -0.61
VPS41-201ENST00000265745 FOXK1P85037 733 aa11.26□□□□□ -0.61
VPS41-201ENST00000265745 COL9A3Q14050 684 aaPredicted RBP11.26□□□□□ -0.61
VPS41-201ENST00000265745 PGM5Q15124 567 aa11.26□□□□□ -0.61
VPS41-201ENST00000265745 NECTIN1Q15223 517 aa11.26□□□□□ -0.61
VPS41-201ENST00000265745 DGKDQ16760 1214 aa11.26□□□□□ -0.61
VPS41-201ENST00000265745 KCNV1Q6PIU1 500 aa11.26□□□□□ -0.61
VPS41-201ENST00000265745 SESTD1Q86VW0 696 aa11.26□□□□□ -0.61
VPS41-201ENST00000265745 FCHSD1Q86WN1 690 aa11.26□□□□□ -0.61
VPS41-201ENST00000265745 TMTC2Q8N394 836 aa11.26□□□□□ -0.61
VPS41-201ENST00000265745 MAFAQ8NHW3 353 aaPredicted RBP11.26□□□□□ -0.61
VPS41-201ENST00000265745 IL31RAQ8NI17 732 aa11.26□□□□□ -0.61
VPS41-201ENST00000265745 PPTC7Q8NI37 304 aa11.26□□□□□ -0.61
VPS41-201ENST00000265745 CTAGE1Q96RT6 745 aa11.26□□□□□ -0.61
VPS41-201ENST00000265745 MCM3APO60318 1980 aa11.26□□□□□ -0.61
VPS41-201ENST00000265745 TRIM66O15016 1216 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 PRC1O43663 620 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 PPFIA4O75335 1185 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 DDAH1O94760 285 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 PFKMP08237 780 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 IQCF3P0C7M6 154 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 TGFB3P10600 412 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 HOXD8P13378 290 aaPredicted RBP11.25□□□□□ -0.61
VPS41-201ENST00000265745 FOSL2P15408 326 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 KIF5BP33176 963 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 CHMP4BP1P59074 171 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 SP2Q02086 613 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 PTGISQ16647 500 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 BMP2KLQ5H9B9 411 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 CELF3Q5SZQ8 465 aaKnown RBP11.25□□□□□ -0.61
VPS41-201ENST00000265745 MYSM1Q5VVJ2 828 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 CASC1Q6TDU7 716 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.25□□□□□ -0.61
VPS41-201ENST00000265745 DHX37Q8IY37 1157 aaKnown RBP11.25□□□□□ -0.61
VPS41-201ENST00000265745 ZNF654Q8IZM8 581 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 RETREG2Q8NC44 543 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 IL27Q8NEV9 243 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 CTCFLQ8NI51 663 aaPredicted RBP11.25□□□□□ -0.61
VPS41-201ENST00000265745 PIBF1Q8WXW3 757 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 TMEM87BQ96K49 555 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 LZTS2Q9BRK4 669 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 MYL10Q9BUA6 226 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 SPZ1Q9BXG8 430 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 KDM4CQ9H3R0 1056 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 MSRAQ9UJ68 235 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 SLC4A7Q9Y6M7 1214 aa11.25□□□□□ -0.61
VPS41-201ENST00000265745 HAS3O00219 553 aa11.24□□□□□ -0.61
VPS41-201ENST00000265745 SH2B2O14492 632 aaPredicted RBP11.24□□□□□ -0.61
VPS41-201ENST00000265745 CCND2P30279 289 aa11.24□□□□□ -0.61
VPS41-201ENST00000265745 RFC2P35250 354 aa11.24□□□□□ -0.61
VPS41-201ENST00000265745 LIFRP42702 1097 aa11.24□□□□□ -0.61
VPS41-201ENST00000265745 BFSP2Q13515 415 aa11.24□□□□□ -0.61
VPS41-201ENST00000265745 RAB30Q15771 203 aa11.24□□□□□ -0.61
VPS41-201ENST00000265745 CREB3L3Q68CJ9 461 aa11.24□□□□□ -0.61
VPS41-201ENST00000265745 GDF6Q6KF10 455 aaPredicted RBP11.24□□□□□ -0.61
VPS41-201ENST00000265745 CENPQQ7L2Z9 268 aaPredicted RBP11.24□□□□□ -0.61
VPS41-201ENST00000265745 DEFB128Q7Z7B8 93 aa11.24□□□□□ -0.61
VPS41-201ENST00000265745 SKAP1Q86WV1 359 aa11.24□□□□□ -0.61
VPS41-201ENST00000265745 SRBD1Q8N5C6 995 aaKnown RBP11.24□□□□□ -0.61
VPS41-201ENST00000265745 RRP36Q96EU6 259 aaKnown RBP11.24□□□□□ -0.61
VPS41-201ENST00000265745 ANO2Q9NQ90 1003 aa11.24□□□□□ -0.61
VPS41-201ENST00000265745 GTF2IRD1Q9UHL9 959 aa11.24□□□□□ -0.61
VPS41-201ENST00000265745 NOD1Q9Y239 953 aa11.24□□□□□ -0.61
VPS41-201ENST00000265745 CDH23Q9H251 3354 aa11.24□□□□□ -0.61
VPS41-201ENST00000265745 CCDC69A6NI79 296 aa11.23□□□□□ -0.61
VPS41-201ENST00000265745 GALR2O43603 387 aaPredicted RBP11.23□□□□□ -0.61
VPS41-201ENST00000265745 GGPS1O95749 300 aa11.23□□□□□ -0.61
VPS41-201ENST00000265745 F2P00734 622 aa11.23□□□□□ -0.61
VPS41-201ENST00000265745 ATP2A2P16615 1042 aaKnown RBP11.23□□□□□ -0.61
VPS41-201ENST00000265745 PSEN2P49810 448 aa11.23□□□□□ -0.61
VPS41-201ENST00000265745 GNAQP50148 359 aa11.23□□□□□ -0.61
VPS41-201ENST00000265745 MRPS9P82933 396 aaKnown RBP11.23□□□□□ -0.61
VPS41-201ENST00000265745 GPNMBQ14956 572 aa11.23□□□□□ -0.61
VPS41-201ENST00000265745 HSDL1Q3SXM5 330 aa11.23□□□□□ -0.61
VPS41-201ENST00000265745 NFXL1Q6ZNB6 911 aa11.23□□□□□ -0.61
VPS41-201ENST00000265745 C7orf31Q8N865 590 aa11.23□□□□□ -0.61
VPS41-201ENST00000265745 PDCD7Q8N8D1 485 aaKnown RBP11.23□□□□□ -0.61
VPS41-201ENST00000265745 CAGE1Q8TC20 777 aa11.23□□□□□ -0.61
VPS41-201ENST00000265745 GPKOWQ92917 476 aaPredicted RBP eCLIP11.23□□□□□ -0.615e-7■■■■■ 43.5
VPS41-201ENST00000265745 SPATA33Q96N06 139 aa11.23□□□□□ -0.61
VPS41-201ENST00000265745 INPP4AQ96PE3 977 aaPredicted RBP11.23□□□□□ -0.61
VPS41-201ENST00000265745 KATNAL1Q9BW62 490 aa11.23□□□□□ -0.61
VPS41-201ENST00000265745 HDAC6Q9UBN7 1215 aa11.23□□□□□ -0.61
VPS41-201ENST00000265745 YBX2Q9Y2T7 364 aaKnown RBP11.23□□□□□ -0.61
VPS41-201ENST00000265745 LCTP09848 1927 aa11.23□□□□□ -0.61
VPS41-201ENST00000265745 LRRC37A2A6NM11 1700 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 ZBBXA8MT70 800 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 SPATA31C2B4DYI2 1134 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 PIK3CDO00329 1044 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 MEIS2O14770 477 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 SORBS3O60504 671 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 STAM2O75886 525 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 PLEKHA8P1O95397 391 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 ZNF286BP0CG31 522 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 CALM1P0DP23 149 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 CALM2P0DP24 149 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms