RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 TCP10L2B9ZVM9 353 aa18■□□□□ 0.47
CTCF-201ENST00000264010 FAM13AO94988 1023 aa18■□□□□ 0.47
CTCF-201ENST00000264010 RPL13P26373 211 aaKnown RBP18■□□□□ 0.47
CTCF-201ENST00000264010 FKBP3Q00688 224 aaKnown RBP18■□□□□ 0.47
CTCF-201ENST00000264010 CHURC1Q8WUH1 139 aa18■□□□□ 0.47
CTCF-201ENST00000264010 CFBP00751 764 aa18■□□□□ 0.47
CTCF-201ENST00000264010 GUF1Q8N442 669 aaKnown RBP18■□□□□ 0.47
CTCF-201ENST00000264010 TDRD3Q9H7E2 651 aaKnown RBP18■□□□□ 0.47
CTCF-201ENST00000264010 NYAP2Q9P242 653 aa18■□□□□ 0.47
CTCF-201ENST00000264010 RPAINQ86UA6 219 aa18■□□□□ 0.47
CTCF-201ENST00000264010 TAF4BQ92750 862 aa18■□□□□ 0.47
CTCF-201ENST00000264010 MRPL44Q9H9J2 332 aaKnown RBP18■□□□□ 0.47
CTCF-201ENST00000264010 DDX4Q9NQI0 724 aaKnown RBP18■□□□□ 0.47
CTCF-201ENST00000264010 PLA2G4BP0C869 781 aa17.99■□□□□ 0.47
CTCF-201ENST00000264010 SLC51AQ86UW1 340 aa17.99■□□□□ 0.47
CTCF-201ENST00000264010 CCDC170Q8IYT3 715 aa17.99■□□□□ 0.47
CTCF-201ENST00000264010 MYO6Q9UM54 1294 aa17.99■□□□□ 0.47
CTCF-201ENST00000264010 ARAP2Q8WZ64 1704 aa17.99■□□□□ 0.47
CTCF-201ENST00000264010 F5H6K3 240 aa17.99■□□□□ 0.47
CTCF-201ENST00000264010 KLRC3Q07444 240 aa17.99■□□□□ 0.47
CTCF-201ENST00000264010 CAPZA3Q96KX2 299 aa17.99■□□□□ 0.47
CTCF-201ENST00000264010 NUCKS1Q9H1E3 243 aaKnown RBP17.99■□□□□ 0.47
CTCF-201ENST00000264010 NDST4Q9H3R1 872 aa17.99■□□□□ 0.47
CTCF-201ENST00000264010 ZCCHC17Q9NP64 241 aaKnown RBP17.99■□□□□ 0.47
CTCF-201ENST00000264010 MYO1CO00159 1063 aa17.99■□□□□ 0.47
CTCF-201ENST00000264010 GH2P01242 217 aa17.99■□□□□ 0.47
CTCF-201ENST00000264010 MAGEA1P43355 309 aa17.99■□□□□ 0.47
CTCF-201ENST00000264010 NFIAQ12857 509 aa17.99■□□□□ 0.47
CTCF-201ENST00000264010 VWA3BQ502W6 1294 aa17.99■□□□□ 0.47
CTCF-201ENST00000264010 LRCH2Q5VUJ6 765 aa17.99■□□□□ 0.47
CTCF-201ENST00000264010 TEX2Q8IWB9 1127 aa17.99■□□□□ 0.47
CTCF-201ENST00000264010 CAPN11Q9UMQ6 739 aa17.99■□□□□ 0.47
CTCF-201ENST00000264010 USP11P51784 963 aa17.98■□□□□ 0.47
CTCF-201ENST00000264010 PPP4R3AQ6IN85 833 aa17.98■□□□□ 0.47
CTCF-201ENST00000264010 SCLT1Q96NL6 688 aa17.98■□□□□ 0.47
CTCF-201ENST00000264010 DDX41Q9UJV9 622 aaKnown RBP17.98■□□□□ 0.47
CTCF-201ENST00000264010 LIG3P49916 1009 aa17.98■□□□□ 0.47
CTCF-201ENST00000264010 HDLBPQ00341 1268 aaKnown RBP17.98■□□□□ 0.47
CTCF-201ENST00000264010 SLC9C1Q4G0N8 1177 aa17.98■□□□□ 0.47
CTCF-201ENST00000264010 SPICE1Q8N0Z3 855 aa17.98■□□□□ 0.47
CTCF-201ENST00000264010 ZDHHC15Q96MV8 337 aa17.98■□□□□ 0.47
CTCF-201ENST00000264010 PPP1R1BQ9UD71 204 aaPredicted RBP17.98■□□□□ 0.47
CTCF-201ENST00000264010 LRRC10BA6NIK2 292 aa17.98■□□□□ 0.47
CTCF-201ENST00000264010 CALUO43852 315 aaPredicted RBP17.98■□□□□ 0.47
CTCF-201ENST00000264010 TADA3O75528 432 aa17.98■□□□□ 0.47
CTCF-201ENST00000264010 SHMT1P34896 483 aa17.98■□□□□ 0.47
CTCF-201ENST00000264010 CLCN6P51797 869 aa17.98■□□□□ 0.47
CTCF-201ENST00000264010 ARID5AQ03989 594 aa17.98■□□□□ 0.47
CTCF-201ENST00000264010 BRD3Q15059 726 aa17.98■□□□□ 0.47
CTCF-201ENST00000264010 ZYXQ15942 572 aaKnown RBP17.98■□□□□ 0.47
CTCF-201ENST00000264010 IFIH1Q9BYX4 1025 aaKnown RBP17.98■□□□□ 0.47
CTCF-201ENST00000264010 EHD4Q9H223 541 aa17.98■□□□□ 0.47
CTCF-201ENST00000264010 MRFAP1Q9Y605 127 aa17.98■□□□□ 0.47
CTCF-201ENST00000264010 SAR1BQ9Y6B6 198 aa17.98■□□□□ 0.47
CTCF-201ENST00000264010 DDX60Q8IY21 1712 aaKnown RBP17.98■□□□□ 0.47
CTCF-201ENST00000264010 MYMKA6NI61 221 aa17.97■□□□□ 0.47
CTCF-201ENST00000264010 AOC3Q16853 763 aa17.97■□□□□ 0.47
CTCF-201ENST00000264010 ICE2Q659A1 982 aa17.97■□□□□ 0.47
CTCF-201ENST00000264010 CCDC174Q6PII3 467 aa17.97■□□□□ 0.47
CTCF-201ENST00000264010 TRIM65Q6PJ69 517 aa17.97■□□□□ 0.47
CTCF-201ENST00000264010 MAP3K9P80192 1104 aa17.97■□□□□ 0.47
CTCF-201ENST00000264010 LTBP4Q8N2S1 1624 aa17.97■□□□□ 0.47
CTCF-201ENST00000264010 SLC37A4O43826 429 aa17.97■□□□□ 0.47
CTCF-201ENST00000264010 RAPGEF1Q13905 1077 aa17.97■□□□□ 0.47
CTCF-201ENST00000264010 NAALADL2Q58DX5 795 aa17.97■□□□□ 0.47
CTCF-201ENST00000264010 ODF2Q5BJF6 829 aa17.97■□□□□ 0.47
CTCF-201ENST00000264010 IRX2Q9BZI1 471 aaPredicted RBP17.97■□□□□ 0.47
CTCF-201ENST00000264010 RRP15Q9Y3B9 282 aaKnown RBP17.97■□□□□ 0.47
CTCF-201ENST00000264010 COL4A3BPQ9Y5P4 624 aa17.97■□□□□ 0.47
CTCF-201ENST00000264010 CHMP2AO43633 222 aa17.96■□□□□ 0.47
CTCF-201ENST00000264010 ARHGAP4P98171 946 aa17.96■□□□□ 0.47
CTCF-201ENST00000264010 TTI2Q6NXR4 508 aa17.96■□□□□ 0.47
CTCF-201ENST00000264010 HS2ST1Q7LGA3 356 aa17.96■□□□□ 0.47
CTCF-201ENST00000264010 SYCP3Q8IZU3 236 aa17.96■□□□□ 0.47
CTCF-201ENST00000264010 CERS5Q8N5B7 392 aa17.96■□□□□ 0.47
CTCF-201ENST00000264010 HPS3Q969F9 1004 aa17.96■□□□□ 0.47
CTCF-201ENST00000264010 KIFC2Q96AC6 838 aa17.96■□□□□ 0.47
CTCF-201ENST00000264010 NHEJ1Q9H9Q4 299 aaPredicted RBP17.96■□□□□ 0.47
CTCF-201ENST00000264010 NLRC4Q9NPP4 1024 aa17.96■□□□□ 0.47
CTCF-201ENST00000264010 CHD4Q14839 1912 aa17.96■□□□□ 0.47
CTCF-201ENST00000264010 CLRN2A0PK11 232 aa17.96■□□□□ 0.47
CTCF-201ENST00000264010 SNAP25P60880 206 aa17.96■□□□□ 0.47
CTCF-201ENST00000264010 GRB10Q13322 594 aa17.96■□□□□ 0.47
CTCF-201ENST00000264010 STYK1Q6J9G0 422 aa17.96■□□□□ 0.47
CTCF-201ENST00000264010 PROM2Q8N271 834 aa17.96■□□□□ 0.47
CTCF-201ENST00000264010 GCOM1H8Y6P7 765 aaPredicted RBP17.96■□□□□ 0.47
CTCF-201ENST00000264010 SEC31AO94979 1220 aaKnown RBP17.96■□□□□ 0.47
CTCF-201ENST00000264010 POLR2MP0CAP2 368 aa17.96■□□□□ 0.47
CTCF-201ENST00000264010 EPB41P11171 864 aaKnown RBP17.96■□□□□ 0.47
CTCF-201ENST00000264010 SFMBT2Q5VUG0 894 aa17.96■□□□□ 0.47
CTCF-201ENST00000264010 MTRQ99707 1265 aa17.96■□□□□ 0.47
CTCF-201ENST00000264010 SLC24A3Q9HC58 644 aa17.96■□□□□ 0.47
CTCF-201ENST00000264010 CPSF2Q9P2I0 782 aaKnown RBP17.96■□□□□ 0.47
CTCF-201ENST00000264010 ONECUT3O60422 494 aaPredicted RBP17.95■□□□□ 0.46
CTCF-201ENST00000264010 PABPC4Q13310 644 aaKnown RBP eCLIP17.95■□□□□ 0.46
CTCF-201ENST00000264010 ADAM9Q13443 819 aa17.95■□□□□ 0.46
CTCF-201ENST00000264010 MRPL11Q9Y3B7 192 aaKnown RBP17.95■□□□□ 0.46
CTCF-201ENST00000264010 SAMM50Q9Y512 469 aa17.95■□□□□ 0.46
CTCF-201ENST00000264010 EBAG9O00559 213 aa17.95■□□□□ 0.46
CTCF-201ENST00000264010 ADAMTS3O15072 1205 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms