RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 LAD1O00515 517 aa13.68□□□□□ -0.22
CHMP3-201ENST00000263856 EIF3HO15372 352 aaKnown RBP eCLIP13.68□□□□□ -0.22
CHMP3-201ENST00000263856 ATP2C2O75185 946 aa13.68□□□□□ -0.22
CHMP3-201ENST00000263856 RASA1P20936 1047 aa13.68□□□□□ -0.22
CHMP3-201ENST00000263856 INPP5BP32019 993 aa13.68□□□□□ -0.22
CHMP3-201ENST00000263856 SBK1Q52WX2 424 aa13.68□□□□□ -0.22
CHMP3-201ENST00000263856 TCERG1LQ5VWI1 586 aa13.68□□□□□ -0.22
CHMP3-201ENST00000263856 ICE2Q659A1 982 aa13.68□□□□□ -0.22
CHMP3-201ENST00000263856 SPTY2D1Q68D10 685 aaPredicted RBP13.68□□□□□ -0.22
CHMP3-201ENST00000263856 PURBQ96QR8 312 aaKnown RBP13.68□□□□□ -0.22
CHMP3-201ENST00000263856 CUEDC2Q9H467 287 aa13.68□□□□□ -0.22
CHMP3-201ENST00000263856 BLOC1S4Q9NUP1 217 aa13.68□□□□□ -0.22
CHMP3-201ENST00000263856 CAPN7Q9Y6W3 813 aa13.68□□□□□ -0.22
CHMP3-201ENST00000263856 BACH1O14867 736 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 FGFR1OPO95684 399 aaKnown RBP13.67□□□□□ -0.22
CHMP3-201ENST00000263856 KLRC1P26715 233 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 BTDP43251 543 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 SF3B3Q15393 1217 aaKnown RBP13.67□□□□□ -0.22
CHMP3-201ENST00000263856 KLHDC7AQ5VTJ3 777 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 PDXDC1Q6P996 788 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 IFT20Q8IY31 132 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 IPO4Q8TEX9 1081 aaKnown RBP13.67□□□□□ -0.22
CHMP3-201ENST00000263856 ZMYND12Q9H0C1 365 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 KCNK3O14649 394 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 SLC16A2P36021 539 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 CDK8P49336 464 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 KLHL30Q0D2K2 578 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 CEP85LQ5SZL2 805 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 CENPPQ6IPU0 288 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 UNC13DQ70J99 1090 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 MYOCDQ8IZQ8 938 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 OR2W6PQ8NHA6 318 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 TAF4BQ92750 862 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 PNMA5Q96PV4 448 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 FGFBP2Q9BYJ0 223 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 PPANQ9NQ55 473 aaKnown RBP13.67□□□□□ -0.22
CHMP3-201ENST00000263856 MYH14Q7Z406 1995 aaKnown RBP13.67□□□□□ -0.22
CHMP3-201ENST00000263856 A0A087WUV0 522 aaPredicted RBP13.67□□□□□ -0.22
CHMP3-201ENST00000263856 PALM3A6NDB9 673 aaPredicted RBP13.67□□□□□ -0.22
CHMP3-201ENST00000263856 PRPHP41219 470 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 SEC24CP53992 1094 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 ODF2Q5BJF6 829 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 FAM182BQ5T319 152 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 LINC00116Q8NCU8 138 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 AP1M1Q9BXS5 423 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 EFCC1Q9HA90 598 aa13.67□□□□□ -0.22
CHMP3-201ENST00000263856 A0A1W2PQJ5 194 aa13.66□□□□□ -0.22
CHMP3-201ENST00000263856 E9PMD0 336 aa13.66□□□□□ -0.22
CHMP3-201ENST00000263856 HERC4Q5GLZ8 1057 aaPredicted RBP13.66□□□□□ -0.22
CHMP3-201ENST00000263856 FAM83BQ5T0W9 1011 aa13.66□□□□□ -0.22
CHMP3-201ENST00000263856 DDX42Q86XP3 938 aaKnown RBP eCLIP13.66□□□□□ -0.22
CHMP3-201ENST00000263856 ZSCAN29Q8IWY8 852 aaPredicted RBP13.66□□□□□ -0.22
CHMP3-201ENST00000263856 RNPC3Q96LT9 517 aaKnown RBP13.66□□□□□ -0.22
CHMP3-201ENST00000263856 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.66□□□□□ -0.22
CHMP3-201ENST00000263856 MPHOSPH10O00566 681 aaKnown RBP13.66□□□□□ -0.22
CHMP3-201ENST00000263856 ACTN1P12814 892 aa13.66□□□□□ -0.22
CHMP3-201ENST00000263856 NFIXQ14938 502 aa13.66□□□□□ -0.22
CHMP3-201ENST00000263856 DCAF17Q5H9S7 520 aaPredicted RBP13.66□□□□□ -0.22
CHMP3-201ENST00000263856 SPAG5Q96R06 1193 aa13.66□□□□□ -0.22
CHMP3-201ENST00000263856 RAB34Q9BZG1 259 aa13.66□□□□□ -0.22
CHMP3-201ENST00000263856 TRIM31Q9BZY9 425 aa13.66□□□□□ -0.22
CHMP3-201ENST00000263856 ANKRD2Q9GZV1 360 aa13.66□□□□□ -0.22
CHMP3-201ENST00000263856 PANK4Q9NVE7 773 aa13.66□□□□□ -0.22
CHMP3-201ENST00000263856 GNPATO15228 680 aa13.65□□□□□ -0.22
CHMP3-201ENST00000263856 CEP104O60308 925 aa13.65□□□□□ -0.22
CHMP3-201ENST00000263856 ADCY7P51828 1080 aa13.65□□□□□ -0.22
CHMP3-201ENST00000263856 GALNT17Q6IS24 598 aa13.65□□□□□ -0.22
CHMP3-201ENST00000263856 EMBQ6PCB8 327 aa13.65□□□□□ -0.22
CHMP3-201ENST00000263856 OTUD6BQ8N6M0 293 aa13.65□□□□□ -0.22
CHMP3-201ENST00000263856 BAP1Q92560 729 aa13.65□□□□□ -0.22
CHMP3-201ENST00000263856 MAGEF1Q9HAY2 307 aa13.65□□□□□ -0.22
CHMP3-201ENST00000263856 KCNMA1Q12791 1236 aa13.65□□□□□ -0.22
CHMP3-201ENST00000263856 COASYQ13057 564 aa13.65□□□□□ -0.22
CHMP3-201ENST00000263856 ECM1Q16610 540 aa13.65□□□□□ -0.22
CHMP3-201ENST00000263856 FAM26FQ5R3K3 315 aa13.65□□□□□ -0.22
CHMP3-201ENST00000263856 ADAT2Q7Z6V5 191 aaKnown RBP13.65□□□□□ -0.22
CHMP3-201ENST00000263856 RAD54LQ92698 747 aa13.65□□□□□ -0.22
CHMP3-201ENST00000263856 COL4A3BPQ9Y5P4 624 aa13.65□□□□□ -0.22
CHMP3-201ENST00000263856 A0A087X0T9 212 aa13.65□□□□□ -0.23
CHMP3-201ENST00000263856 GOLGA6L10A6NI86 522 aa13.65□□□□□ -0.23
CHMP3-201ENST00000263856 E7EVH7 732 aa13.65□□□□□ -0.23
CHMP3-201ENST00000263856 FAM228BP0C875 321 aa13.65□□□□□ -0.23
CHMP3-201ENST00000263856 PAK2Q13177 524 aa13.65□□□□□ -0.23
CHMP3-201ENST00000263856 NAA35Q5VZE5 725 aa13.65□□□□□ -0.23
CHMP3-201ENST00000263856 KAT2BQ92831 832 aa13.65□□□□□ -0.23
CHMP3-201ENST00000263856 BMP2KQ9NSY1 1161 aaPredicted RBP13.65□□□□□ -0.23
CHMP3-201ENST00000263856 KIAA1024Q9UPX6 916 aa13.65□□□□□ -0.23
CHMP3-201ENST00000263856 GRIN2DO15399 1336 aa13.64□□□□□ -0.23
CHMP3-201ENST00000263856 MYO1FO00160 1098 aa13.64□□□□□ -0.23
CHMP3-201ENST00000263856 SLURP2P0DP57 97 aa13.64□□□□□ -0.23
CHMP3-201ENST00000263856 PDE4CQ08493 712 aa13.64□□□□□ -0.23
CHMP3-201ENST00000263856 PTF1AQ7RTS3 328 aa13.64□□□□□ -0.23
CHMP3-201ENST00000263856 DAGLBQ8NCG7 672 aa13.64□□□□□ -0.23
CHMP3-201ENST00000263856 CASKIN2Q8WXE0 1202 aa13.64□□□□□ -0.23
CHMP3-201ENST00000263856 LUC7LQ9NQ29 371 aaKnown RBP13.64□□□□□ -0.23
CHMP3-201ENST00000263856 MYH1P12882 1939 aa13.64□□□□□ -0.23
CHMP3-201ENST00000263856 RAD51CO43502 376 aa13.64□□□□□ -0.23
CHMP3-201ENST00000263856 PPP1R2P41236 205 aa13.64□□□□□ -0.23
CHMP3-201ENST00000263856 PRPF4BQ13523 1007 aaKnown RBP13.64□□□□□ -0.23
CHMP3-201ENST00000263856 ASIC2Q16515 512 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms