RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 PRPHP41219 470 aa13.97□□□□□ -0.17
LIG1-201ENST00000263274 KIAA0753Q2KHM9 967 aa13.97□□□□□ -0.17
LIG1-201ENST00000263274 DCAF8Q5TAQ9 597 aa13.97□□□□□ -0.17
LIG1-201ENST00000263274 SFMBT2Q5VUG0 894 aa13.97□□□□□ -0.17
LIG1-201ENST00000263274 UNC13DQ70J99 1090 aa13.97□□□□□ -0.17
LIG1-201ENST00000263274 KCTD1Q719H9 257 aa13.97□□□□□ -0.17
LIG1-201ENST00000263274 FAM133AQ8N9E0 248 aa13.97□□□□□ -0.17
LIG1-201ENST00000263274 TAF4BQ92750 862 aa13.97□□□□□ -0.17
LIG1-201ENST00000263274 SPAG5Q96R06 1193 aa13.97□□□□□ -0.17
LIG1-201ENST00000263274 ERGIC2Q96RQ1 377 aa13.97□□□□□ -0.17
LIG1-201ENST00000263274 CAPS2Q9BXY5 557 aa13.97□□□□□ -0.17
LIG1-201ENST00000263274 TTYH3Q9C0H2 523 aa13.97□□□□□ -0.17
LIG1-201ENST00000263274 PANK4Q9NVE7 773 aa13.97□□□□□ -0.17
LIG1-201ENST00000263274 SALL4Q9UJQ4 1053 aa13.97□□□□□ -0.17
LIG1-201ENST00000263274 KIAA1024Q9UPX6 916 aa13.97□□□□□ -0.17
LIG1-201ENST00000263274 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.97□□□□□ -0.17
LIG1-201ENST00000263274 CFAP58Q5T655 872 aa13.96□□□□□ -0.17
LIG1-201ENST00000263274 TTBK2Q6IQ55 1244 aa13.96□□□□□ -0.17
LIG1-201ENST00000263274 FNBP4Q8N3X1 1017 aaPredicted RBP13.96□□□□□ -0.17
LIG1-201ENST00000263274 MTMR8Q96EF0 704 aa13.96□□□□□ -0.17
LIG1-201ENST00000263274 LZTS2Q9BRK4 669 aa13.96□□□□□ -0.17
LIG1-201ENST00000263274 CCNL1Q9UK58 526 aaPredicted RBP13.96□□□□□ -0.17
LIG1-201ENST00000263274 KRT14P02533 472 aa13.96□□□□□ -0.17
LIG1-201ENST00000263274 KLHL30Q0D2K2 578 aa13.96□□□□□ -0.17
LIG1-201ENST00000263274 PDCLQ13371 301 aa13.96□□□□□ -0.17
LIG1-201ENST00000263274 FAM26FQ5R3K3 315 aa13.96□□□□□ -0.17
LIG1-201ENST00000263274 CCDC43Q96MW1 224 aaKnown RBP13.96□□□□□ -0.17
LIG1-201ENST00000263274 BLOC1S4Q9NUP1 217 aa13.96□□□□□ -0.17
LIG1-201ENST00000263274 PCDHA12Q9UN75 941 aa13.96□□□□□ -0.17
LIG1-201ENST00000263274 CICQ96RK0 1608 aaPredicted RBP13.96□□□□□ -0.17
LIG1-201ENST00000263274 PHLPP1O60346 1717 aa13.96□□□□□ -0.18
LIG1-201ENST00000263274 PPFIA4O75335 1185 aa13.96□□□□□ -0.18
LIG1-201ENST00000263274 PALMO75781 387 aa13.96□□□□□ -0.18
LIG1-201ENST00000263274 HPDP32754 393 aaPredicted RBP13.96□□□□□ -0.18
LIG1-201ENST00000263274 CFAP221Q4G0U5 840 aa13.96□□□□□ -0.18
LIG1-201ENST00000263274 DCAF17Q5H9S7 520 aaPredicted RBP13.96□□□□□ -0.18
LIG1-201ENST00000263274 EP400NLQ6ZTU2 488 aa13.96□□□□□ -0.18
LIG1-201ENST00000263274 ARL8AQ96BM9 186 aa13.96□□□□□ -0.18
LIG1-201ENST00000263274 SPATA31A1Q5TZJ5 1347 aa13.95□□□□□ -0.18
LIG1-201ENST00000263274 H0YHG0 523 aa13.95□□□□□ -0.18
LIG1-201ENST00000263274 M0R2N6 131 aa13.95□□□□□ -0.18
LIG1-201ENST00000263274 OPA1O60313 960 aa13.95□□□□□ -0.18
LIG1-201ENST00000263274 HEXIM1O94992 359 aaKnown RBP13.95□□□□□ -0.18
LIG1-201ENST00000263274 GTF2IP78347 998 aa13.95□□□□□ -0.18
LIG1-201ENST00000263274 CENPPQ6IPU0 288 aa13.95□□□□□ -0.18
LIG1-201ENST00000263274 PNMA5Q96PV4 448 aa13.95□□□□□ -0.18
LIG1-201ENST00000263274 MYCBPQ99417 103 aaPredicted RBP13.95□□□□□ -0.18
LIG1-201ENST00000263274 CDCA7Q9BWT1 371 aaPredicted RBP13.95□□□□□ -0.18
LIG1-201ENST00000263274 LUC7LQ9NQ29 371 aaKnown RBP13.95□□□□□ -0.18
LIG1-201ENST00000263274 GEMIN8Q9NWZ8 242 aaKnown RBP13.95□□□□□ -0.18
LIG1-201ENST00000263274 STIM2Q9P246 746 aa13.95□□□□□ -0.18
LIG1-201ENST00000263274 DDX25Q9UHL0 483 aaKnown RBP13.95□□□□□ -0.18
LIG1-201ENST00000263274 COL4A1P02462 1669 aa13.95□□□□□ -0.18
LIG1-201ENST00000263274 TARSL2A2RTX5 802 aaKnown RBP13.95□□□□□ -0.18
LIG1-201ENST00000263274 MEIS1O00470 390 aa13.95□□□□□ -0.18
LIG1-201ENST00000263274 CLGNO14967 610 aa13.95□□□□□ -0.18
LIG1-201ENST00000263274 CARSP49589 748 aaKnown RBP13.95□□□□□ -0.18
LIG1-201ENST00000263274 CNBD1Q8NA66 436 aa13.95□□□□□ -0.18
LIG1-201ENST00000263274 ARHGEF1Q92888 912 aaKnown RBP13.95□□□□□ -0.18
LIG1-201ENST00000263274 VIPAS39Q9H9C1 493 aa13.95□□□□□ -0.18
LIG1-201ENST00000263274 MAGEF1Q9HAY2 307 aa13.95□□□□□ -0.18
LIG1-201ENST00000263274 ITGB4P16144 1822 aa13.95□□□□□ -0.18
LIG1-201ENST00000263274 USP17L15C9J2P7 530 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 USP17L13C9JLJ4 530 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 USP17L11C9JVI0 530 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 USP17L18D6R9N7 530 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 USP17L22D6RA61 530 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 USP17L17D6RBQ6 530 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 USP17L19D6RCP7 530 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 USP17L20D6RJB6 530 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 NDUFAB1O14561 156 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 PPP1R2P41236 205 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 USP17L24Q0WX57 530 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 SF3A3Q12874 501 aaKnown RBP eCLIP13.94□□□□□ -0.182e-6■■■■□ 21
LIG1-201ENST00000263274 FAM83BQ5T0W9 1011 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 USP17L6PQ6QN14 398 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 TSEN2Q8NCE0 465 aaKnown RBP13.94□□□□□ -0.18
LIG1-201ENST00000263274 NARFQ9UHQ1 456 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 AGPSO00116 658 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 SCNN1DP51172 638 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 SNAP25P60880 206 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 GPBP1Q86WP2 473 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 ZSCAN29Q8IWY8 852 aaPredicted RBP13.94□□□□□ -0.18
LIG1-201ENST00000263274 RAD54LQ92698 747 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 SPZ1Q9BXG8 430 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 COL4A3BPQ9Y5P4 624 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 KCNK3O14649 394 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 IRAK1P51617 712 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 FKBP3Q00688 224 aaKnown RBP13.94□□□□□ -0.18
LIG1-201ENST00000263274 COASYQ13057 564 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 ODF2Q5BJF6 829 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 DAGLBQ8NCG7 672 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 NEDD1Q8NHV4 660 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 PACSIN1Q9BY11 444 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 SEPT11Q9NVA2 429 aaKnown RBP13.94□□□□□ -0.18
LIG1-201ENST00000263274 SIK3Q9Y2K2 1263 aa13.94□□□□□ -0.18
LIG1-201ENST00000263274 FAM196BA6NMK8 535 aa13.93□□□□□ -0.18
LIG1-201ENST00000263274 CEP104O60308 925 aa13.93□□□□□ -0.18
LIG1-201ENST00000263274 IBSPP21815 317 aaPredicted RBP13.93□□□□□ -0.18
LIG1-201ENST00000263274 STAT3P40763 770 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms