RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 MAP9Q49MG5 647 aa11.14□□□□□ -0.63
LIG3-201ENST00000262327 SOGA3Q5TF21 947 aa11.14□□□□□ -0.63
LIG3-201ENST00000262327 TBC1D16Q8TBP0 767 aa11.14□□□□□ -0.63
LIG3-201ENST00000262327 CNKSR2Q8WXI2 1034 aa11.14□□□□□ -0.63
LIG3-201ENST00000262327 SNX12Q9UMY4 172 aa11.14□□□□□ -0.63
LIG3-201ENST00000262327 PACSIN2Q9UNF0 486 aaPredicted RBP11.14□□□□□ -0.63
LIG3-201ENST00000262327 C10orf71Q711Q0 1435 aa11.14□□□□□ -0.63
LIG3-201ENST00000262327 LTBP1Q14766 1721 aa11.14□□□□□ -0.63
LIG3-201ENST00000262327 GOLGA6BA6NDN3 693 aa11.14□□□□□ -0.63
LIG3-201ENST00000262327 GNAQP50148 359 aa11.14□□□□□ -0.63
LIG3-201ENST00000262327 TUBB4BP68371 445 aa11.14□□□□□ -0.63
LIG3-201ENST00000262327 GRB10Q13322 594 aa11.14□□□□□ -0.63
LIG3-201ENST00000262327 VWA3BQ502W6 1294 aa11.14□□□□□ -0.63
LIG3-201ENST00000262327 SV2BQ7L1I2 683 aa11.14□□□□□ -0.63
LIG3-201ENST00000262327 LRRC47Q8N1G4 583 aaKnown RBP11.14□□□□□ -0.63
LIG3-201ENST00000262327 CEP95Q96GE4 821 aa11.14□□□□□ -0.63
LIG3-201ENST00000262327 CALML4Q96GE6 196 aa11.14□□□□□ -0.63
LIG3-201ENST00000262327 CDK5RAP3Q96JB5 506 aa11.14□□□□□ -0.63
LIG3-201ENST00000262327 NUP58Q9BVL2 599 aa11.14□□□□□ -0.63
LIG3-201ENST00000262327 BLOC1S4Q9NUP1 217 aa11.14□□□□□ -0.63
LIG3-201ENST00000262327 TACC1O75410 805 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 IVLP07476 585 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 SLC1A4P43007 532 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 MAGEA1P43355 309 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 CDK8P49336 464 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 UBE2SQ16763 222 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 CCDC181Q5TID7 509 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 KCTD16Q68DU8 428 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 NELFCDQ8IXH7 590 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 PROCA1Q8NCQ7 364 aaPredicted RBP11.13□□□□□ -0.63
LIG3-201ENST00000262327 EHBP1Q8NDI1 1231 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 SPATA4Q8NEY3 305 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 GPCPD1Q9NPB8 672 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 RAD21O60216 631 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 USO1O60763 962 aaKnown RBP11.13□□□□□ -0.63
LIG3-201ENST00000262327 TNNI2P48788 182 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 SPTY2D1Q68D10 685 aaPredicted RBP11.13□□□□□ -0.63
LIG3-201ENST00000262327 CACNA2D4Q7Z3S7 1137 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 AMOTL1Q8IY63 956 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 CCDC170Q8IYT3 715 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 TSEN2Q8NCE0 465 aaKnown RBP11.13□□□□□ -0.63
LIG3-201ENST00000262327 WDR66Q8TBY9 1149 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 MTMR8Q96EF0 704 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 PNMA5Q96PV4 448 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 OSBPL9Q96SU4 736 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 C7orf25Q9BPX7 421 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 FGFBP2Q9BYJ0 223 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 ZMYND12Q9H0C1 365 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 SH2D4AQ9H788 454 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 C6orf50Q9HD87 102 aa11.13□□□□□ -0.63
LIG3-201ENST00000262327 SEC63Q9UGP8 760 aaKnown RBP11.13□□□□□ -0.63
LIG3-201ENST00000262327 GOLGA6CA6NDK9 693 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 GOLGA6DP0CG33 693 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 IL1R1P14778 569 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 BTDP43251 543 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 CALCRLQ16602 461 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 CNNM4Q6P4Q7 775 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 FAM114A1Q8IWE2 563 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 REXO1Q8N1G1 1221 aaKnown RBP11.12□□□□□ -0.63
LIG3-201ENST00000262327 NOC3LQ8WTT2 800 aaKnown RBP11.12□□□□□ -0.63
LIG3-201ENST00000262327 ERGIC2Q96RQ1 377 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 PDGFDQ9GZP0 370 aaPredicted RBP11.12□□□□□ -0.63
LIG3-201ENST00000262327 GOLGA6AQ9NYA3 693 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 POLLQ9UGP5 575 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 SIK3Q9Y2K2 1263 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 FTCDO95954 541 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 PICALMQ13492 652 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 ECM1Q16610 540 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 GRIPAP1Q4V328 841 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 CC2D2BQ6DHV5 1058 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 KRT25Q7Z3Z0 450 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 EGFL6Q8IUX8 553 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 SH2D3CQ8N5H7 860 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 SNX29Q8TEQ0 813 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 UPF1Q92900 1129 aaKnown RBP eCLIP11.12□□□□□ -0.63
LIG3-201ENST00000262327 ARL8AQ96BM9 186 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 RBM12Q9NTZ6 932 aaKnown RBP11.12□□□□□ -0.63
LIG3-201ENST00000262327 PLAGL2Q9UPG8 496 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 NPHP3-ACAD11A0A0J9YXS1 232 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 TUBBP07437 444 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 CCT5P48643 541 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 AARSP49588 968 aaKnown RBP eCLIP11.12□□□□□ -0.63
LIG3-201ENST00000262327 TRADDQ15628 312 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 TEX11Q8IYF3 940 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 TRIM58Q8NG06 486 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 FAM76AQ8TAV0 307 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 IFT81Q8WYA0 676 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 LARP4BQ92615 738 aaKnown RBP11.12□□□□□ -0.63
LIG3-201ENST00000262327 DDX12PQ92771 950 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 PURBQ96QR8 312 aaKnown RBP11.12□□□□□ -0.63
LIG3-201ENST00000262327 GOLPH3Q9H4A6 298 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 ZHX3Q9H4I2 956 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 JRKLQ9Y4A0 524 aa11.12□□□□□ -0.63
LIG3-201ENST00000262327 F8W031 263 aaPredicted RBP11.11□□□□□ -0.63
LIG3-201ENST00000262327 BAG3O95817 575 aa11.11□□□□□ -0.63
LIG3-201ENST00000262327 PRPHP41219 470 aa11.11□□□□□ -0.63
LIG3-201ENST00000262327 ATP1A2P50993 1020 aa11.11□□□□□ -0.63
LIG3-201ENST00000262327 AMPD3Q01432 767 aa11.11□□□□□ -0.63
LIG3-201ENST00000262327 CENPPQ6IPU0 288 aa11.11□□□□□ -0.63
LIG3-201ENST00000262327 ZSCAN29Q8IWY8 852 aaPredicted RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms