RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 SFI1A8K8P3 1242 aa23.61■■□□□ 1.37
TRIM28-201ENST00000253024 COASYQ13057 564 aa23.61■■□□□ 1.37
TRIM28-201ENST00000253024 LEKR1Q6ZMV7 388 aa23.61■■□□□ 1.37
TRIM28-201ENST00000253024 UNC13DQ70J99 1090 aa23.61■■□□□ 1.37
TRIM28-201ENST00000253024 SIK3Q9Y2K2 1263 aa23.61■■□□□ 1.37
TRIM28-201ENST00000253024 LAMB2P55268 1798 aa23.61■■□□□ 1.37
TRIM28-201ENST00000253024 CASZ1Q86V15 1759 aa23.61■■□□□ 1.37
TRIM28-201ENST00000253024 PSTPIP2Q9H939 334 aa23.61■■□□□ 1.37
TRIM28-201ENST00000253024 SPICE1Q8N0Z3 855 aa23.6■■□□□ 1.37
TRIM28-201ENST00000253024 LZTS2Q9BRK4 669 aa23.6■■□□□ 1.37
TRIM28-201ENST00000253024 USO1O60763 962 aaKnown RBP23.6■■□□□ 1.37
TRIM28-201ENST00000253024 GDF11O95390 407 aa23.6■■□□□ 1.37
TRIM28-201ENST00000253024 PAPD7Q5XG87 772 aaKnown RBP23.6■■□□□ 1.37
TRIM28-201ENST00000253024 FAM133AQ8N9E0 248 aa23.6■■□□□ 1.37
TRIM28-201ENST00000253024 IFT81Q8WYA0 676 aa23.6■■□□□ 1.37
TRIM28-201ENST00000253024 NUP58Q9BVL2 599 aa23.6■■□□□ 1.37
TRIM28-201ENST00000253024 TACC1O75410 805 aa23.59■■□□□ 1.37
TRIM28-201ENST00000253024 SYF2O95926 243 aaKnown RBP23.59■■□□□ 1.37
TRIM28-201ENST00000253024 PABPC4Q13310 644 aaKnown RBP eCLIP23.59■■□□□ 1.379e-9■■■■□ 20
TRIM28-201ENST00000253024 ADAMTS1Q9UHI8 967 aa23.59■■□□□ 1.37
TRIM28-201ENST00000253024 CCDC88AQ3V6T2 1871 aa23.59■■□□□ 1.37
TRIM28-201ENST00000253024 GYS1P13807 737 aa23.59■■□□□ 1.37
TRIM28-201ENST00000253024 PSMC6P62333 389 aa23.59■■□□□ 1.37
TRIM28-201ENST00000253024 KCNMA1Q12791 1236 aa23.59■■□□□ 1.37
TRIM28-201ENST00000253024 TRADDQ15628 312 aa23.59■■□□□ 1.37
TRIM28-201ENST00000253024 MAN2A1Q16706 1144 aa23.59■■□□□ 1.37
TRIM28-201ENST00000253024 GPBP1Q86WP2 473 aa23.59■■□□□ 1.37
TRIM28-201ENST00000253024 SERPINB13Q9UIV8 391 aa23.59■■□□□ 1.37
TRIM28-201ENST00000253024 HPCAL4Q9UM19 191 aa23.59■■□□□ 1.37
TRIM28-201ENST00000253024 HOXA13P31271 388 aaPredicted RBP23.58■■□□□ 1.37
TRIM28-201ENST00000253024 CASP5P51878 434 aa23.58■■□□□ 1.37
TRIM28-201ENST00000253024 PRR16Q569H4 304 aa23.58■■□□□ 1.37
TRIM28-201ENST00000253024 RC3H1Q5TC82 1133 aaKnown RBP23.58■■□□□ 1.37
TRIM28-201ENST00000253024 TCERG1LQ5VWI1 586 aa23.58■■□□□ 1.37
TRIM28-201ENST00000253024 KCTD16Q68DU8 428 aa23.58■■□□□ 1.37
TRIM28-201ENST00000253024 CREG2Q8IUH2 290 aa23.58■■□□□ 1.37
TRIM28-201ENST00000253024 MYOCDQ8IZQ8 938 aa23.58■■□□□ 1.37
TRIM28-201ENST00000253024 GBP3Q9H0R5 595 aa23.58■■□□□ 1.37
TRIM28-201ENST00000253024 RIOX1Q9H6W3 641 aa23.58■■□□□ 1.37
TRIM28-201ENST00000253024 PLAGL2Q9UPG8 496 aa23.58■■□□□ 1.37
TRIM28-201ENST00000253024 EPS15P42566 896 aa23.58■■□□□ 1.37
TRIM28-201ENST00000253024 UBXN2AP68543 259 aa23.58■■□□□ 1.37
TRIM28-201ENST00000253024 FAM26FQ5R3K3 315 aa23.58■■□□□ 1.37
TRIM28-201ENST00000253024 NOC3LQ8WTT2 800 aaKnown RBP23.58■■□□□ 1.37
TRIM28-201ENST00000253024 TBC1D5Q92609 795 aa23.58■■□□□ 1.37
TRIM28-201ENST00000253024 EXOC4Q96A65 974 aa23.58■■□□□ 1.37
TRIM28-201ENST00000253024 ERGIC2Q96RQ1 377 aa23.58■■□□□ 1.37
TRIM28-201ENST00000253024 LRRC55Q6ZSA7 311 aa23.58■■□□□ 1.36
TRIM28-201ENST00000253024 OSBPL9Q96SU4 736 aa23.58■■□□□ 1.36
TRIM28-201ENST00000253024 SH2D4AQ9H788 454 aa23.58■■□□□ 1.36
TRIM28-201ENST00000253024 DCAF17Q5H9S7 520 aaPredicted RBP23.57■■□□□ 1.36
TRIM28-201ENST00000253024 GOLGA6L1Q8N7Z2 621 aa23.57■■□□□ 1.36
TRIM28-201ENST00000253024 CUEDC2Q9H467 287 aa23.57■■□□□ 1.36
TRIM28-201ENST00000253024 RBM12Q9NTZ6 932 aaKnown RBP23.57■■□□□ 1.36
TRIM28-201ENST00000253024 SNX12Q9UMY4 172 aa23.57■■□□□ 1.36
TRIM28-201ENST00000253024 ROBO3Q96MS0 1386 aa23.57■■□□□ 1.36
TRIM28-201ENST00000253024 UBAP1LF5GYI3 381 aa23.57■■□□□ 1.36
TRIM28-201ENST00000253024 ACTN2P35609 894 aa23.57■■□□□ 1.36
TRIM28-201ENST00000253024 DDR1Q08345 913 aa23.57■■□□□ 1.36
TRIM28-201ENST00000253024 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.57■■□□□ 1.362e-7■■■□□ 18.8
TRIM28-201ENST00000253024 PCDHA1Q9Y5I3 950 aa23.57■■□□□ 1.36
TRIM28-201ENST00000253024 MYL1P05976 194 aa23.56■■□□□ 1.36
TRIM28-201ENST00000253024 GUCY2FP51841 1108 aa23.56■■□□□ 1.36
TRIM28-201ENST00000253024 MSL1Q68DK7 614 aa23.56■■□□□ 1.36
TRIM28-201ENST00000253024 SPATA4Q8NEY3 305 aa23.56■■□□□ 1.36
TRIM28-201ENST00000253024 CYP2W1Q8TAV3 490 aa23.56■■□□□ 1.36
TRIM28-201ENST00000253024 TSG101Q99816 390 aa23.56■■□□□ 1.36
TRIM28-201ENST00000253024 TTLL1O95922 423 aa23.56■■□□□ 1.36
TRIM28-201ENST00000253024 ATP2B4P23634 1241 aa23.56■■□□□ 1.36
TRIM28-201ENST00000253024 EHHADHQ08426 723 aa23.56■■□□□ 1.36
TRIM28-201ENST00000253024 ZNF543Q08ER8 600 aa23.56■■□□□ 1.36
TRIM28-201ENST00000253024 CCDC170Q8IYT3 715 aa23.56■■□□□ 1.36
TRIM28-201ENST00000253024 RBM17Q96I25 401 aaKnown RBP23.56■■□□□ 1.36
TRIM28-201ENST00000253024 ZC3H12CQ9C0D7 883 aaKnown RBP23.56■■□□□ 1.36
TRIM28-201ENST00000253024 KSR1Q8IVT5 923 aa23.55■■□□□ 1.36
TRIM28-201ENST00000253024 RAB34Q9BZG1 259 aa23.55■■□□□ 1.36
TRIM28-201ENST00000253024 LAMB1P07942 1786 aa23.55■■□□□ 1.36
TRIM28-201ENST00000253024 DLEC1Q9Y238 1755 aa23.55■■□□□ 1.36
TRIM28-201ENST00000253024 TLR2O60603 784 aa23.55■■□□□ 1.36
TRIM28-201ENST00000253024 TUBB2AQ13885 445 aa23.55■■□□□ 1.36
TRIM28-201ENST00000253024 EHBP1Q8NDI1 1231 aa23.55■■□□□ 1.36
TRIM28-201ENST00000253024 BAP1Q92560 729 aa23.55■■□□□ 1.36
TRIM28-201ENST00000253024 CUL5Q93034 780 aa23.55■■□□□ 1.36
TRIM28-201ENST00000253024 TUBB2BQ9BVA1 445 aa23.55■■□□□ 1.36
TRIM28-201ENST00000253024 RSPH10B2B2RC85 870 aa23.55■■□□□ 1.36
TRIM28-201ENST00000253024 CLIC2O15247 247 aa23.55■■□□□ 1.36
TRIM28-201ENST00000253024 CHMP2AO43633 222 aa23.55■■□□□ 1.36
TRIM28-201ENST00000253024 RSPH10BP0C881 870 aa23.55■■□□□ 1.36
TRIM28-201ENST00000253024 CKAP4Q07065 602 aaKnown RBP23.55■■□□□ 1.36
TRIM28-201ENST00000253024 FAM83BQ5T0W9 1011 aa23.55■■□□□ 1.36
TRIM28-201ENST00000253024 MED24O75448 989 aa23.54■■□□□ 1.36
TRIM28-201ENST00000253024 PALMO75781 387 aa23.54■■□□□ 1.36
TRIM28-201ENST00000253024 PLA2G4BP0C869 781 aa23.54■■□□□ 1.36
TRIM28-201ENST00000253024 KCNA1Q09470 495 aa23.54■■□□□ 1.36
TRIM28-201ENST00000253024 QRICH1Q2TAL8 776 aa23.54■■□□□ 1.36
TRIM28-201ENST00000253024 TAF3Q5VWG9 929 aa23.54■■□□□ 1.36
TRIM28-201ENST00000253024 CCNI2Q6ZMN8 369 aaPredicted RBP23.54■■□□□ 1.36
TRIM28-201ENST00000253024 DNAJC19Q96DA6 116 aa23.54■■□□□ 1.36
TRIM28-201ENST00000253024 P2RX7Q99572 595 aaKnown RBP23.54■■□□□ 1.36
TRIM28-201ENST00000253024 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.54■■□□□ 1.361e-7■□□□□ 10.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms