RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 KIAA0753Q2KHM9 967 aa25.59■■□□□ 1.69
VTI1B-201ENST00000216456 TCTN1Q2MV58 587 aa25.59■■□□□ 1.69
VTI1B-201ENST00000216456 CCDC82Q8N4S0 544 aa25.59■■□□□ 1.69
VTI1B-201ENST00000216456 RETREG2Q8NC44 543 aa25.59■■□□□ 1.69
VTI1B-201ENST00000216456 CTCFLQ8NI51 663 aaPredicted RBP25.59■■□□□ 1.69
VTI1B-201ENST00000216456 PPM1EQ8WY54 764 aa25.59■■□□□ 1.69
VTI1B-201ENST00000216456 TCEANC2Q96MN5 208 aa25.59■■□□□ 1.69
VTI1B-201ENST00000216456 SPZ1Q9BXG8 430 aa25.59■■□□□ 1.69
VTI1B-201ENST00000216456 MTIF3Q9H2K0 278 aaKnown RBP25.59■■□□□ 1.69
VTI1B-201ENST00000216456 GTF2IRD1Q9UHL9 959 aa25.59■■□□□ 1.69
VTI1B-201ENST00000216456 MYH7BA7E2Y1 1941 aa25.59■■□□□ 1.69
VTI1B-201ENST00000216456 TET1Q8NFU7 2136 aa25.58■■□□□ 1.69
VTI1B-201ENST00000216456 HAS3O00219 553 aa25.58■■□□□ 1.69
VTI1B-201ENST00000216456 PITPNM1O00562 1244 aa25.58■■□□□ 1.69
VTI1B-201ENST00000216456 F2P00734 622 aa25.58■■□□□ 1.69
VTI1B-201ENST00000216456 ATP2A2P16615 1042 aaKnown RBP25.58■■□□□ 1.69
VTI1B-201ENST00000216456 SEMA3FQ13275 785 aa25.58■■□□□ 1.69
VTI1B-201ENST00000216456 SESTD1Q86VW0 696 aa25.58■■□□□ 1.69
VTI1B-201ENST00000216456 FTOQ9C0B1 505 aaKnown RBP eCLIP25.58■■□□□ 1.69
VTI1B-201ENST00000216456 CCDC69A6NI79 296 aa25.57■■□□□ 1.68
VTI1B-201ENST00000216456 ARHGEF15O94989 841 aa25.57■■□□□ 1.68
VTI1B-201ENST00000216456 RAB30Q15771 203 aa25.57■■□□□ 1.68
VTI1B-201ENST00000216456 RRP36Q96EU6 259 aaKnown RBP25.57■■□□□ 1.68
VTI1B-201ENST00000216456 TANC1Q9C0D5 1861 aa25.57■■□□□ 1.68
VTI1B-201ENST00000216456 TRIP12Q14669 1992 aaPredicted RBP25.56■■□□□ 1.68
VTI1B-201ENST00000216456 CUL9Q8IWT3 2517 aa25.56■■□□□ 1.68
VTI1B-201ENST00000216456 MEIS2O14770 477 aa25.56■■□□□ 1.68
VTI1B-201ENST00000216456 HOXD8P13378 290 aaPredicted RBP25.56■■□□□ 1.68
VTI1B-201ENST00000216456 BFSP2Q13515 415 aa25.56■■□□□ 1.68
VTI1B-201ENST00000216456 TMCO2Q7Z6W1 182 aaPredicted RBP25.56■■□□□ 1.68
VTI1B-201ENST00000216456 SAMD3Q8N6K7 520 aa25.56■■□□□ 1.68
VTI1B-201ENST00000216456 C7orf31Q8N865 590 aa25.56■■□□□ 1.68
VTI1B-201ENST00000216456 TMEM87BQ96K49 555 aa25.56■■□□□ 1.68
VTI1B-201ENST00000216456 MAP3K14Q99558 947 aa25.56■■□□□ 1.68
VTI1B-201ENST00000216456 C16orf70Q9BSU1 422 aa25.56■■□□□ 1.68
VTI1B-201ENST00000216456 FRMPD4Q14CM0 1322 aa25.56■■□□□ 1.68
VTI1B-201ENST00000216456 KIF5BP33176 963 aa25.55■■□□□ 1.68
VTI1B-201ENST00000216456 BMP2KLQ5H9B9 411 aa25.55■■□□□ 1.68
VTI1B-201ENST00000216456 CENPQQ7L2Z9 268 aaPredicted RBP25.55■■□□□ 1.68
VTI1B-201ENST00000216456 SLC28A3Q9HAS3 691 aa25.55■■□□□ 1.68
VTI1B-201ENST00000216456 MYO9BQ13459 2157 aa25.54■■□□□ 1.68
VTI1B-201ENST00000216456 PFKMP08237 780 aa25.54■■□□□ 1.68
VTI1B-201ENST00000216456 TRAF1Q13077 416 aa25.54■■□□□ 1.68
VTI1B-201ENST00000216456 RASEFQ8IZ41 740 aa25.54■■□□□ 1.68
VTI1B-201ENST00000216456 SMARCC2Q8TAQ2 1214 aa25.54■■□□□ 1.68
VTI1B-201ENST00000216456 CERS4Q9HA82 394 aa25.54■■□□□ 1.68
VTI1B-201ENST00000216456 MLXIPQ9HAP2 919 aa25.54■■□□□ 1.68
VTI1B-201ENST00000216456 SPTBN5Q9NRC6 3674 aaKnown RBP25.54■■□□□ 1.68
VTI1B-201ENST00000216456 RFXAPO00287 272 aa25.53■■□□□ 1.68
VTI1B-201ENST00000216456 NBNO60934 754 aa25.53■■□□□ 1.68
VTI1B-201ENST00000216456 CKBP12277 381 aa25.53■■□□□ 1.68
VTI1B-201ENST00000216456 RFC2P35250 354 aa25.53■■□□□ 1.68
VTI1B-201ENST00000216456 CCDC85BQ15834 202 aaPredicted RBP25.53■■□□□ 1.68
VTI1B-201ENST00000216456 UBE2SQ16763 222 aa25.53■■□□□ 1.68
VTI1B-201ENST00000216456 TRIM71Q2Q1W2 868 aaKnown RBP25.53■■□□□ 1.68
VTI1B-201ENST00000216456 ADCK5Q3MIX3 580 aa25.53■■□□□ 1.68
VTI1B-201ENST00000216456 PPP2R2DQ66LE6 453 aa25.53■■□□□ 1.68
VTI1B-201ENST00000216456 TRAF7Q6Q0C0 670 aa25.53■■□□□ 1.68
VTI1B-201ENST00000216456 LRRC8DQ7L1W4 858 aa25.53■■□□□ 1.68
VTI1B-201ENST00000216456 CYFIP1Q7L576 1253 aa25.53■■□□□ 1.68
VTI1B-201ENST00000216456 SPRED2Q7Z698 418 aa25.53■■□□□ 1.68
VTI1B-201ENST00000216456 MICU3Q86XE3 530 aa25.53■■□□□ 1.68
VTI1B-201ENST00000216456 INPP4AQ96PE3 977 aaPredicted RBP25.53■■□□□ 1.68
VTI1B-201ENST00000216456 SEC63Q9UGP8 760 aaKnown RBP25.53■■□□□ 1.68
VTI1B-201ENST00000216456 DOCK5Q9H7D0 1870 aa25.52■■□□□ 1.68
VTI1B-201ENST00000216456 SPATA31C2B4DYI2 1134 aa25.52■■□□□ 1.68
VTI1B-201ENST00000216456 PPFIA4O75335 1185 aa25.52■■□□□ 1.68
VTI1B-201ENST00000216456 CA3P07451 260 aa25.52■■□□□ 1.68
VTI1B-201ENST00000216456 SELPP16109 830 aa25.52■■□□□ 1.68
VTI1B-201ENST00000216456 IGFBP4P22692 258 aa25.52■■□□□ 1.68
VTI1B-201ENST00000216456 LIFRP42702 1097 aa25.52■■□□□ 1.68
VTI1B-201ENST00000216456 SP4Q02446 784 aa25.52■■□□□ 1.68
VTI1B-201ENST00000216456 KCNV1Q6PIU1 500 aa25.52■■□□□ 1.68
VTI1B-201ENST00000216456 TRIM50Q86XT4 487 aa25.52■■□□□ 1.68
VTI1B-201ENST00000216456 CAGE1Q8TC20 777 aa25.52■■□□□ 1.68
VTI1B-201ENST00000216456 AFAP1L1Q8TED9 768 aa25.52■■□□□ 1.68
VTI1B-201ENST00000216456 GAS2L1Q99501 681 aaPredicted RBP25.52■■□□□ 1.68
VTI1B-201ENST00000216456 MTA3Q9BTC8 594 aa25.52■■□□□ 1.68
VTI1B-201ENST00000216456 KATNAL1Q9BW62 490 aa25.52■■□□□ 1.68
VTI1B-201ENST00000216456 PCDHA11Q9Y5I1 949 aa25.52■■□□□ 1.68
VTI1B-201ENST00000216456 SLC12A7Q9Y666 1083 aa25.52■■□□□ 1.68
VTI1B-201ENST00000216456 REV3LO60673 3130 aa25.52■■□□□ 1.68
VTI1B-201ENST00000216456 LGALS2P05162 132 aa25.51■■□□□ 1.67
VTI1B-201ENST00000216456 TGFB3P10600 412 aa25.51■■□□□ 1.67
VTI1B-201ENST00000216456 ACTN1P12814 892 aa25.51■■□□□ 1.67
VTI1B-201ENST00000216456 MBTPS1Q14703 1052 aa25.51■■□□□ 1.67
VTI1B-201ENST00000216456 ZNF618Q5T7W0 954 aa25.51■■□□□ 1.67
VTI1B-201ENST00000216456 TMTC3Q6ZXV5 915 aa25.51■■□□□ 1.67
VTI1B-201ENST00000216456 BRPF3Q9ULD4 1205 aa25.51■■□□□ 1.67
VTI1B-201ENST00000216456 EPOPA6NHQ4 379 aa25.5■■□□□ 1.67
VTI1B-201ENST00000216456 SMARCA1P28370 1054 aa25.5■■□□□ 1.67
VTI1B-201ENST00000216456 ICAM3P32942 547 aa25.5■■□□□ 1.67
VTI1B-201ENST00000216456 TMTC2Q8N394 836 aa25.5■■□□□ 1.67
VTI1B-201ENST00000216456 FANCBQ8NB91 859 aa25.5■■□□□ 1.67
VTI1B-201ENST00000216456 LZTS2Q9BRK4 669 aa25.5■■□□□ 1.67
VTI1B-201ENST00000216456 OSBPL7Q9BZF2 842 aa25.5■■□□□ 1.67
VTI1B-201ENST00000216456 CPA1P15085 419 aa25.49■■□□□ 1.67
VTI1B-201ENST00000216456 GNAQP50148 359 aa25.49■■□□□ 1.67
VTI1B-201ENST00000216456 DEFB103AP81534 67 aa25.49■■□□□ 1.67
VTI1B-201ENST00000216456 RBL2Q08999 1139 aa25.49■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms