RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 CREB3O43889 395 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 CCDC22O60826 627 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 COPB2P35606 906 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 ART3Q13508 389 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 MYCT1Q8N699 235 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 METTL22Q9BUU2 404 aaPredicted RBP6.56□□□□□ -1.36
VPS13D-201ENST00000011700 ATG3Q9NT62 314 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 ENOPH1Q9UHY7 261 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 RIPOR2Q9Y4F9 1068 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 KPNA7A9QM74 516 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 E7ENQ6 273 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 MAGEA9P43362 315 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 CCNA1P78396 465 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 ARHGAP27Q6ZUM4 889 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 TSSK1BQ9BXA7 367 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 NDUFA13Q9P0J0 144 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 PCDHA12Q9UN75 941 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 MAP3K15Q6ZN16 1313 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 CHMP2AO43633 222 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 BASP1P80723 227 aaKnown RBP6.55□□□□□ -1.36
VPS13D-201ENST00000011700 ERICH1Q86X53 443 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 NUDCD1Q96RS6 583 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 PRDM10Q9NQV6 1147 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 CHPF2Q9P2E5 772 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 TLK1Q9UKI8 766 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 EPN1Q9Y6I3 576 aaPredicted RBP6.55□□□□□ -1.36
VPS13D-201ENST00000011700 MSH2P43246 934 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 ENOSF1Q7L5Y1 443 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 KIAA0825Q8IV33 1275 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 CXorf38Q8TB03 319 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 VAT1LQ9HCJ6 419 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 PCDHB8Q9UN66 801 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 TMEM110-MUSTN1A8MSY1 372 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 DEAF1O75398 565 aaPredicted RBP6.55□□□□□ -1.36
VPS13D-201ENST00000011700 TNNI1P19237 187 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 MTA1Q13330 715 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 PDE1CQ14123 709 aaPredicted RBP6.55□□□□□ -1.36
VPS13D-201ENST00000011700 TAF1BQ53T94 588 aaPredicted RBP6.55□□□□□ -1.36
VPS13D-201ENST00000011700 TBC1D9BQ66K14 1250 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 NCAPH2Q6IBW4 605 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 NFATC2IPQ8NCF5 419 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 SH3TC2Q8TF17 1288 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 RBM41Q96IZ5 413 aaKnown RBP6.55□□□□□ -1.36
VPS13D-201ENST00000011700 NEO1Q92859 1461 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 SYCE1LA8MT33 242 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 ASAP2O43150 1006 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 PURAQ00577 322 aaKnown RBP6.55□□□□□ -1.36
VPS13D-201ENST00000011700 SPARCL1Q14515 664 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 C16orf87Q6PH81 154 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 ANO5Q75V66 913 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 SNTNA6NMZ2 147 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 PIK3R2O00459 728 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 DACT3Q96B18 629 aaPredicted RBP6.55□□□□□ -1.36
VPS13D-201ENST00000011700 TSC22D3Q99576 134 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 MIS18AQ9NYP9 233 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 PRKAG2Q9UGJ0 569 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 ZHX2Q9Y6X8 837 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 LDHAP00338 332 aaKnown RBP6.55□□□□□ -1.36
VPS13D-201ENST00000011700 DMTNQ08495 405 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 C16orf72Q14CZ0 275 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 SESTD1Q86VW0 696 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 KLC2Q9H0B6 622 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 TBC1D7Q9P0N9 293 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 PDE8AO60658 829 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 SERPINI2O75830 405 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 CALB1P05937 261 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 ARL4AP40617 200 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 AP1B1Q10567 949 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 TCIRG1Q13488 830 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 KLHL38Q2WGJ6 581 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 SETD3Q86TU7 594 aaPredicted RBP6.55□□□□□ -1.36
VPS13D-201ENST00000011700 RAB42Q8N4Z0 105 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 NEK9Q8TD19 979 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 CPP00450 1065 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 CLTAP09496 248 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 CNBD1Q8NA66 436 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 SAAL1Q96ER3 474 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 MRPL48Q96GC5 212 aaKnown RBP6.55□□□□□ -1.36
VPS13D-201ENST00000011700 NUP85Q9BW27 656 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 GOLPH3LQ9H4A5 285 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 VPS9D1Q9Y2B5 631 aa6.55□□□□□ -1.36
VPS13D-201ENST00000011700 CACNA1CQ13936 2221 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 ANKARQ7Z5J8 1434 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 TRIP11Q15643 1979 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 EYA2O00167 538 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 ABCE1P61221 599 aaKnown RBP6.54□□□□□ -1.36
VPS13D-201ENST00000011700 SNX29Q8TEQ0 813 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 CCDC127Q96BQ5 260 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 PARP3Q9Y6F1 533 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 SPAG7O75391 227 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 CHGBP05060 677 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 IRX1P78414 480 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-201ENST00000011700 ADRM1Q16186 407 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 SPAG6O75602 509 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 ECEL1O95672 775 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 MYBL1P10243 752 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 MX2P20592 715 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 TBXAS1P24557 533 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-201ENST00000011700 LETM2Q2VYF4 491 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 C4orf22Q6V702 233 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms