RNA–Protein interactions for RNA: YOR005C

DNL4, Transcript of DNA ligase required for nonhomologous end-joining (NHEJ), yeastyeast

Gene DNL4, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DNL4YOR005C PUB1P32588 453 aaKnown RBP RIP-Chip data2.56□□□□□ -2not detected
DNL4YOR005C GCG1P32656 232 aaKnown RBP2.56□□□□□ -2
DNL4YOR005C UBC6P33296 250 aaPredicted RBP2.56□□□□□ -2
DNL4YOR005C MSR1P38714 643 aa2.56□□□□□ -2
DNL4YOR005C SMC2P38989 1170 aaKnown RBP2.56□□□□□ -2
DNL4YOR005C YMR124WP39523 943 aaKnown RBP2.56□□□□□ -2
DNL4YOR005C YIL001WP40560 513 aa2.56□□□□□ -2
DNL4YOR005C YJL107CP42947 387 aa2.56□□□□□ -2
DNL4YOR005C EPL1P43572 832 aa2.56□□□□□ -2
DNL4YOR005C URB2P47108 1174 aa2.56□□□□□ -2
DNL4YOR005C YGR127WP53275 312 aa2.56□□□□□ -2
DNL4YOR005C ATG4P53867 494 aa2.56□□□□□ -2
DNL4YOR005C ERV41Q04651 352 aa2.56□□□□□ -2
DNL4YOR005C YML053CQ04978 212 aa2.56□□□□□ -2
DNL4YOR005C RRP45Q05636 305 aaKnown RBP2.56□□□□□ -2
DNL4YOR005C YOL159CQ08300 171 aa2.56□□□□□ -2
DNL4YOR005C SLK19Q08581 821 aaKnown RBP2.56□□□□□ -2
DNL4YOR005C DAS2Q12084 232 aa2.56□□□□□ -2
DNL4YOR005C LAM4P38800 1345 aa2.56□□□□□ -2
DNL4YOR005C JIP3O13555 125 aa2.55□□□□□ -2
DNL4YOR005C RPS13P05756 151 aaKnown RBP2.55□□□□□ -2
DNL4YOR005C SPO7P18410 259 aa2.55□□□□□ -2
DNL4YOR005C DPH5P32469 300 aaPredicted RBP2.55□□□□□ -2
DNL4YOR005C GSH1P32477 678 aa2.55□□□□□ -2
DNL4YOR005C SSE1P32589 693 aaKnown RBP2.55□□□□□ -2
DNL4YOR005C GDA1P32621 518 aa2.55□□□□□ -2
DNL4YOR005C YME1P32795 747 aa2.55□□□□□ -2
DNL4YOR005C YBL055CP34220 418 aaPredicted RBP2.55□□□□□ -2
DNL4YOR005C LHS1P36016 881 aa2.55□□□□□ -2
DNL4YOR005C NTC20P38302 140 aaPredicted RBP2.55□□□□□ -2
DNL4YOR005C YHR131CP38835 850 aa2.55□□□□□ -2
DNL4YOR005C MKT1P40850 830 aaKnown RBP2.55□□□□□ -2
DNL4YOR005C EBS1Q03466 884 aaKnown RBP2.55□□□□□ -2
DNL4YOR005C YMR160WQ03823 816 aa2.55□□□□□ -2
DNL4YOR005C RPN9Q04062 393 aaKnown RBP2.55□□□□□ -2
DNL4YOR005C PHO92Q06390 306 aa2.55□□□□□ -2
DNL4YOR005C SIL1Q08199 421 aa2.55□□□□□ -2
DNL4YOR005C APL5Q08951 932 aaKnown RBP2.55□□□□□ -2
DNL4YOR005C TFB5Q3E7C1 72 aaPredicted RBP2.55□□□□□ -2
DNL4YOR005C DFG16Q99234 619 aa2.55□□□□□ -2
DNL4YOR005C GCD2P12754 651 aaPredicted RBP2.55□□□□□ -2
DNL4YOR005C ARO3P14843 370 aaKnown RBP2.55□□□□□ -2
DNL4YOR005C TAL1P15019 335 aaKnown RBP2.55□□□□□ -2
DNL4YOR005C SPO12P17123 173 aa2.55□□□□□ -2
DNL4YOR005C PHO91P27514 894 aa2.55□□□□□ -2
DNL4YOR005C CRM1P30822 1084 aaKnown RBP2.55□□□□□ -2
DNL4YOR005C MRPL4P36517 319 aa2.55□□□□□ -2
DNL4YOR005C YTA12P40341 825 aa2.55□□□□□ -2
DNL4YOR005C YFR020WP43600 232 aa2.55□□□□□ -2
DNL4YOR005C ALK1P43633 760 aaKnown RBP2.55□□□□□ -2
DNL4YOR005C EFM3P47163 339 aa2.55□□□□□ -2
DNL4YOR005C MSC1Q03104 513 aa2.55□□□□□ -2
DNL4YOR005C TRS23Q03784 219 aa2.55□□□□□ -2
DNL4YOR005C YMR111CQ04461 462 aaPredicted RBP2.55□□□□□ -2
DNL4YOR005C TIP41Q12199 356 aa2.55□□□□□ -2
DNL4YOR005C RPL31BP0C2H9 113 aaKnown RBP2.55□□□□□ -2
DNL4YOR005C URA4P20051 364 aa2.55□□□□□ -2
DNL4YOR005C CLN1P20437 546 aa2.55□□□□□ -2
DNL4YOR005C OSM1P21375 501 aaKnown RBP2.55□□□□□ -2
DNL4YOR005C ERG4P25340 473 aa2.55□□□□□ -2
DNL4YOR005C YIM1P28625 365 aa2.55□□□□□ -2
DNL4YOR005C FAA1P30624 700 aaKnown RBP2.55□□□□□ -2
DNL4YOR005C SMY1P32364 656 aaKnown RBP2.55□□□□□ -2
DNL4YOR005C HEK2P38199 381 aaKnown RBP RIP-Chip data2.55□□□□□ -2not detected
DNL4YOR005C ASG1P40467 964 aa2.55□□□□□ -2
DNL4YOR005C YIL089WP40500 205 aa2.55□□□□□ -2
DNL4YOR005C OPT1P40897 799 aa2.55□□□□□ -2
DNL4YOR005C COG2P53271 262 aa2.55□□□□□ -2
DNL4YOR005C YNL143CP53908 130 aa2.55□□□□□ -2
DNL4YOR005C TOF2Q02208 771 aa2.55□□□□□ -2
DNL4YOR005C INP2Q03824 705 aa2.55□□□□□ -2
DNL4YOR005C RAD33Q04231 177 aa2.55□□□□□ -2
DNL4YOR005C COQ9Q05779 260 aa2.55□□□□□ -2
DNL4YOR005C TMA10Q06177 86 aa2.55□□□□□ -2
DNL4YOR005C AEP3Q12089 606 aa2.55□□□□□ -2
DNL4YOR005C ALG1P16661 449 aa2.54□□□□□ -2
DNL4YOR005C RNR3P21672 869 aaKnown RBP2.54□□□□□ -2
DNL4YOR005C BUD5P25300 642 aaPredicted RBP2.54□□□□□ -2
DNL4YOR005C BOS1P25385 244 aa2.54□□□□□ -2
DNL4YOR005C GEX1P25596 615 aa2.54□□□□□ -2
DNL4YOR005C TSA1P34760 196 aaKnown RBP2.54□□□□□ -2
DNL4YOR005C PFF1P38244 976 aa2.54□□□□□ -2
DNL4YOR005C TSC10P38342 320 aa2.54□□□□□ -2
DNL4YOR005C IMD2P38697 523 aaKnown RBP2.54□□□□□ -2
DNL4YOR005C PIH1P38768 344 aa2.54□□□□□ -2
DNL4YOR005C GIP4P39732 760 aa2.54□□□□□ -2
DNL4YOR005C AIP1P46680 615 aaKnown RBP2.54□□□□□ -2
DNL4YOR005C RPN14P53196 417 aa2.54□□□□□ -2
DNL4YOR005C COQ6P53318 479 aa2.54□□□□□ -2
DNL4YOR005C AQR1P53943 586 aa2.54□□□□□ -2
DNL4YOR005C YMR130WQ04223 302 aa2.54□□□□□ -2
DNL4YOR005C UBX2Q04228 584 aa2.54□□□□□ -2
DNL4YOR005C PLM2Q04383 521 aa2.54□□□□□ -2
DNL4YOR005C FAR8Q05040 523 aa2.54□□□□□ -2
DNL4YOR005C HRD3Q05787 833 aa2.54□□□□□ -2
DNL4YOR005C YFH1Q07540 174 aa2.54□□□□□ -2
DNL4YOR005C HBT1Q07653 1046 aaKnown RBP2.54□□□□□ -2
DNL4YOR005C PCL8Q08966 492 aa2.54□□□□□ -2
DNL4YOR005C YMR084WA2P2R3 262 aa2.54□□□□□ -2
DNL4YOR005C HIS4P00815 799 aaKnown RBP2.54□□□□□ -2
Retrieved 100 of 5,963 RNA–protein pairs in 11.9 ms