RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NIP1	YMR309C	DRN1	P53255	507 aa	Known RBP	0.51	□□□□□ -2.33
NIP1	YMR309C	PNG1	Q02890	363 aa		0.51	□□□□□ -2.33
NIP1	YMR309C	YML131W	Q03102	365 aa		0.51	□□□□□ -2.33
NIP1	YMR309C	VPS38	Q05919	439 aa		0.51	□□□□□ -2.33
NIP1	YMR309C	NCE102	Q12207	173 aa	RIP-Chip data	0.51	□□□□□ -2.33	not detected
NIP1	YMR309C	RLM1	Q12224	676 aa		0.51	□□□□□ -2.33
NIP1	YMR309C	RKM5	Q12367	367 aa		0.51	□□□□□ -2.33
NIP1	YMR309C	GAL80	P04387	435 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	SNT1	P25357	1226 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	ATP11	P32453	318 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	PAH1	P32567	862 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	TCD2	P36101	447 aa	Known RBP	0.5	□□□□□ -2.33
NIP1	YMR309C	MRP21	P38175	177 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	DOT5	P40553	215 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	PCP1	P53259	346 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	DSL1	P53847	754 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	CWC25	P53854	179 aa	Known RBP	0.5	□□□□□ -2.33
NIP1	YMR309C	MRP51	Q02950	344 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	ODC1	Q03028	310 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	RSN1	Q03516	953 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	YDR239C	Q03780	787 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	IRC25	Q07951	179 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	KEL3	Q08979	651 aa	Predicted RBP	0.5	□□□□□ -2.33
NIP1	YMR309C	RCN2	Q12044	265 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	PKH2	Q12236	1081 aa	Known RBP	0.5	□□□□□ -2.33
NIP1	YMR309C	SPE4	Q12455	300 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	AVL9	Q12500	764 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	ENT1	Q12518	454 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	YPT6	Q99260	215 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	PRP2	P20095	876 aa	Predicted RBP	0.5	□□□□□ -2.33
NIP1	YMR309C	POP5	P28005	173 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	MUD1	P32605	298 aa	Known RBP	0.5	□□□□□ -2.33
NIP1	YMR309C	KKQ8	P36004	724 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	CST26	P38226	397 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	YHR131C	P38835	850 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	GCD10	P41814	478 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	RRT5	P43607	289 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	YGR066C	P53242	292 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	NCS2	P53923	493 aa	Predicted RBP	0.5	□□□□□ -2.33
NIP1	YMR309C	VHS1	Q03785	461 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	PPM1	Q04081	328 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	TSA2	Q04120	196 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	PDS5	Q04264	1277 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	YEH1	Q07804	573 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	SNX3	Q08826	162 aa	Known RBP	0.5	□□□□□ -2.33
NIP1	YMR309C	YJR112W-A	Q3E743	109 aa		0.5	□□□□□ -2.33
NIP1	YMR309C	FOB1	O13329	566 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	TRP1	P00912	224 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	CDC16	P09798	840 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	RPL31B	P0C2H9	113 aa	Known RBP	0.49	□□□□□ -2.33
NIP1	YMR309C	HSP26	P15992	214 aa	Known RBP RIP-Chip data	0.49	□□□□□ -2.33	not detected
NIP1	YMR309C	KAR3	P17119	729 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	SLY1	P22213	666 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	RPI1	P23250	407 aa	Known RBP	0.49	□□□□□ -2.33
NIP1	YMR309C	ELO2	P25358	347 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	DPB3	P27344	201 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	IDH2	P28241	369 aa	Known RBP	0.49	□□□□□ -2.33
NIP1	YMR309C	AFG1	P32317	509 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	APE2	P32454	952 aa	Known RBP	0.49	□□□□□ -2.33
NIP1	YMR309C	NPL6	P32832	435 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	MIX23	P38162	196 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	VID24	P38263	362 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	YBR225W	P38321	900 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	MSG5	P38590	489 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	FLC2	P39719	783 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	DFG10	P40526	253 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	SYG1	P40528	902 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	SGN1	P40561	250 aa	Known RBP RIP-Chip data	0.49	□□□□□ -2.33	not detected
NIP1	YMR309C	RMD8	P43620	662 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	YIP1	P53039	248 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	RMD9	P53140	646 aa	Known RBP	0.49	□□□□□ -2.33
NIP1	YMR309C	YIF1	P53845	314 aa	Known RBP	0.49	□□□□□ -2.33
NIP1	YMR309C	RPT6	Q01939	405 aa	Known RBP	0.49	□□□□□ -2.33
NIP1	YMR309C	ADA2	Q02336	434 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	NGL3	Q03210	505 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	SOV1	Q04748	898 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	LIP2	Q06005	328 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	OPY2	Q06810	360 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	TIM18	Q08749	192 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	BI3	Q9ZZW7	517 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	PSK1	P31374	1356 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	CCH1	P50077	2039 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	RPL19A	P0CX82	189 aa	Known RBP	0.49	□□□□□ -2.33
NIP1	YMR309C	RPL19B	P0CX83	189 aa	Predicted RBP	0.49	□□□□□ -2.33
NIP1	YMR309C	CBS1	P14066	229 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	PWP2	P25635	923 aa	Known RBP	0.49	□□□□□ -2.33
NIP1	YMR309C	TIP1	P27654	210 aa	Predicted RBP	0.49	□□□□□ -2.33
NIP1	YMR309C	SSH4	P32343	579 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	RML2	P32611	393 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	IES6	P32617	166 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	YKL097C	P34245	136 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	MUD2	P36084	527 aa	Known RBP	0.49	□□□□□ -2.33
NIP1	YMR309C	VPS24	P36095	224 aa	Known RBP	0.49	□□□□□ -2.33
NIP1	YMR309C	MST28	P39552	234 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	PET130	P47065	347 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	ECM27	P47144	725 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	FIN1	Q03898	291 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	YDR387C	Q04162	555 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	REX4	Q08237	289 aa		0.49	□□□□□ -2.33
NIP1	YMR309C	CUE5	Q08412	411 aa	Known RBP	0.49	□□□□□ -2.33

Retrieved 100 of 5,963 RNA–protein pairs in 13.9 ms