RNA–Protein interactions for RNA: YHR088W

RPF1, Transcript of Protein involved in assembly and export of the large ribosomal subunit, yeastyeast

Gene RPF1, Length 888 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPF1YHR088W ATP11P32453 318 aa2.53□□□□□ -2
RPF1YHR088W GYP6P32806 458 aa2.53□□□□□ -2
RPF1YHR088W RIB5P38145 238 aa2.53□□□□□ -2
RPF1YHR088W YBR225WP38321 900 aa2.53□□□□□ -2
RPF1YHR088W MST28P39552 234 aa2.53□□□□□ -2
RPF1YHR088W FLC2P39719 783 aa2.53□□□□□ -2
RPF1YHR088W POP1P41812 875 aa2.53□□□□□ -2
RPF1YHR088W NCA3P46955 337 aa2.53□□□□□ -2
RPF1YHR088W CWC25P53854 179 aaKnown RBP2.53□□□□□ -2
RPF1YHR088W YMR181CQ03231 154 aa2.53□□□□□ -2
RPF1YHR088W PDS5Q04264 1277 aa2.53□□□□□ -2
RPF1YHR088W IRC25Q07951 179 aa2.53□□□□□ -2
RPF1YHR088W NMD4Q12129 218 aa2.53□□□□□ -2
RPF1YHR088W YPT6Q99260 215 aa2.53□□□□□ -2
RPF1YHR088W SAM1P10659 382 aaKnown RBP2.52□□□□□ -2.01
RPF1YHR088W EST1P17214 699 aaPredicted RBP2.52□□□□□ -2.01
RPF1YHR088W SAM2P19358 384 aaKnown RBP2.52□□□□□ -2.01
RPF1YHR088W PRD1P25375 712 aa2.52□□□□□ -2.01
RPF1YHR088W MSG5P38590 489 aa2.52□□□□□ -2.01
RPF1YHR088W IMD4P50094 524 aaKnown RBP2.52□□□□□ -2.01
RPF1YHR088W SLG1P54867 378 aa2.52□□□□□ -2.01
RPF1YHR088W YKU80Q04437 629 aa2.52□□□□□ -2.01
RPF1YHR088W OPY2Q06810 360 aa2.52□□□□□ -2.01
RPF1YHR088W HUA2Q12134 243 aa2.52□□□□□ -2.01
RPF1YHR088W YBL111CQ3E7Y5 667 aa2.52□□□□□ -2.01
RPF1YHR088W TCD2P36101 447 aaKnown RBP2.51□□□□□ -2.01
RPF1YHR088W TPM2P40414 161 aa2.51□□□□□ -2.01
RPF1YHR088W SYG1P40528 902 aa2.51□□□□□ -2.01
RPF1YHR088W TRS85P46944 698 aa2.51□□□□□ -2.01
RPF1YHR088W YGR066CP53242 292 aa2.51□□□□□ -2.01
RPF1YHR088W MFB1Q04922 465 aa2.51□□□□□ -2.01
RPF1YHR088W NUP2P32499 720 aa2.5□□□□□ -2.01
RPF1YHR088W GAB1P41733 394 aa2.5□□□□□ -2.01
RPF1YHR088W LAM5P43560 674 aa2.5□□□□□ -2.01
RPF1YHR088W LCL3P53153 274 aa2.5□□□□□ -2.01
RPF1YHR088W MTM1P53320 366 aa2.5□□□□□ -2.01
RPF1YHR088W YML131WQ03102 365 aa2.5□□□□□ -2.01
RPF1YHR088W IOC4Q04213 475 aa2.5□□□□□ -2.01
RPF1YHR088W MRD1Q06106 887 aaKnown RBP2.5□□□□□ -2.01
RPF1YHR088W PKH2Q12236 1081 aaKnown RBP2.5□□□□□ -2.01
RPF1YHR088W AVL9Q12500 764 aa2.5□□□□□ -2.01
RPF1YHR088W YJR112W-AQ3E743 109 aa2.5□□□□□ -2.01
RPF1YHR088W PEP3P27801 918 aa2.49□□□□□ -2.01
RPF1YHR088W OCA1P50946 238 aaPredicted RBP2.49□□□□□ -2.01
RPF1YHR088W NCS2P53923 493 aaPredicted RBP2.49□□□□□ -2.01
RPF1YHR088W YLL032CQ07834 825 aaKnown RBP RIP-Chip data2.49□□□□□ -2.01not detected
RPF1YHR088W CUE5Q08412 411 aaKnown RBP2.49□□□□□ -2.01
RPF1YHR088W RLM1Q12224 676 aa2.49□□□□□ -2.01
RPF1YHR088W NFT1P0CE68 1218 aa2.48□□□□□ -2.01
RPF1YHR088W RPS8AP0CX39 200 aaKnown RBP2.48□□□□□ -2.01
RPF1YHR088W RPS8BP0CX40 200 aaKnown RBP2.48□□□□□ -2.01
RPF1YHR088W PWP2P25635 923 aaKnown RBP2.48□□□□□ -2.01
RPF1YHR088W TIP1P27654 210 aaPredicted RBP2.48□□□□□ -2.01
RPF1YHR088W REC114P32841 428 aa2.48□□□□□ -2.01
RPF1YHR088W HXT11P54862 567 aa2.48□□□□□ -2.01
RPF1YHR088W VPS38Q05919 439 aa2.48□□□□□ -2.01
RPF1YHR088W TIM18Q08749 192 aa2.48□□□□□ -2.01
RPF1YHR088W CTI6Q08923 506 aa2.48□□□□□ -2.01
RPF1YHR088W PRB1P09232 635 aa2.47□□□□□ -2.01
RPF1YHR088W CDC16P09798 840 aa2.47□□□□□ -2.01
RPF1YHR088W POP5P28005 173 aa2.47□□□□□ -2.01
RPF1YHR088W VPS24P36095 224 aaKnown RBP2.47□□□□□ -2.01
RPF1YHR088W NOP4P37838 685 aaKnown RBP2.47□□□□□ -2.01
RPF1YHR088W UTP18P40362 594 aaPredicted RBP2.47□□□□□ -2.01
RPF1YHR088W DUO1P53168 247 aaKnown RBP2.47□□□□□ -2.01
RPF1YHR088W VHS1Q03785 461 aa2.47□□□□□ -2.01
RPF1YHR088W PPM1Q04081 328 aa2.47□□□□□ -2.01
RPF1YHR088W YMR018WQ04364 514 aa2.47□□□□□ -2.01
RPF1YHR088W SEC53P07283 254 aaKnown RBP2.46□□□□□ -2.02
RPF1YHR088W DFR1P07807 211 aaKnown RBP RIP-Chip data2.46□□□□□ -2.02not detected
RPF1YHR088W RPL31BP0C2H9 113 aaKnown RBP2.46□□□□□ -2.02
RPF1YHR088W WBP1P33767 430 aaKnown RBP2.46□□□□□ -2.02
RPF1YHR088W YCR041WP37265 110 aa2.46□□□□□ -2.02
RPF1YHR088W ARA1P38115 344 aa2.46□□□□□ -2.02
RPF1YHR088W YJR085CP47131 105 aaKnown RBP2.46□□□□□ -2.02
RPF1YHR088W BRO1P48582 844 aa2.46□□□□□ -2.02
RPF1YHR088W YIP1P53039 248 aa2.46□□□□□ -2.02
RPF1YHR088W NGL3Q03210 505 aa2.46□□□□□ -2.02
RPF1YHR088W RCN2Q12044 265 aa2.46□□□□□ -2.02
RPF1YHR088W YDL007C-AQ2V2Q0 85 aa2.46□□□□□ -2.02
RPF1YHR088W TRP1P00912 224 aa2.45□□□□□ -2.02
RPF1YHR088W TOP1P04786 769 aa2.45□□□□□ -2.02
RPF1YHR088W RHO2P06781 192 aa2.45□□□□□ -2.02
RPF1YHR088W KAR9P32526 644 aa2.45□□□□□ -2.02
RPF1YHR088W MRE11P32829 692 aa2.45□□□□□ -2.02
RPF1YHR088W NPL6P32832 435 aa2.45□□□□□ -2.02
RPF1YHR088W YKL097CP34245 136 aa2.45□□□□□ -2.02
RPF1YHR088W MRPL10P36520 322 aa2.45□□□□□ -2.02
RPF1YHR088W YMR147WP40218 223 aaKnown RBP2.45□□□□□ -2.02
RPF1YHR088W LYS14P40971 790 aa2.45□□□□□ -2.02
RPF1YHR088W ECM11Q04110 302 aa2.45□□□□□ -2.02
RPF1YHR088W SEC39Q12745 709 aa2.45□□□□□ -2.02
RPF1YHR088W MUD1P32605 298 aaKnown RBP2.44□□□□□ -2.02
RPF1YHR088W CHK1P38147 527 aa2.44□□□□□ -2.02
RPF1YHR088W REG2P38232 338 aa2.44□□□□□ -2.02
RPF1YHR088W DFG10P40526 253 aa2.44□□□□□ -2.02
RPF1YHR088W ECM27P47144 725 aa2.44□□□□□ -2.02
RPF1YHR088W CAF130P53280 1122 aaPredicted RBP2.44□□□□□ -2.02
RPF1YHR088W SGT1Q08446 395 aa2.44□□□□□ -2.02
RPF1YHR088W IES4Q08561 116 aa2.44□□□□□ -2.02
Retrieved 100 of 5,963 RNA–protein pairs in 22.3 ms