RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C SPS22P25380 463 aa1.84□□□□□ -2.11
PCF11YDR228C MUD2P36084 527 aaKnown RBP1.84□□□□□ -2.11
PCF11YDR228C STB6P36085 766 aa1.84□□□□□ -2.11
PCF11YDR228C ISC1P40015 477 aaKnown RBP1.84□□□□□ -2.11
PCF11YDR228C PNG1Q02890 363 aa1.84□□□□□ -2.11
PCF11YDR228C RSN1Q03516 953 aa1.84□□□□□ -2.11
PCF11YDR228C HUA2Q12134 243 aa1.84□□□□□ -2.11
PCF11YDR228C AVL9Q12500 764 aa1.84□□□□□ -2.11
PCF11YDR228C SEM1O94742 89 aa1.84□□□□□ -2.12
PCF11YDR228C PAH1P32567 862 aa1.84□□□□□ -2.12
PCF11YDR228C MRE11P32829 692 aa1.84□□□□□ -2.12
PCF11YDR228C MST28P39552 234 aa1.84□□□□□ -2.12
PCF11YDR228C PRM5P40476 318 aa1.84□□□□□ -2.12
PCF11YDR228C APJ1P53940 528 aa1.84□□□□□ -2.12
PCF11YDR228C MRP51Q02950 344 aa1.84□□□□□ -2.12
PCF11YDR228C TAP42Q04372 366 aa1.84□□□□□ -2.12
PCF11YDR228C SOV1Q04748 898 aa1.84□□□□□ -2.12
PCF11YDR228C YPL199CQ08954 240 aa1.84□□□□□ -2.12
PCF11YDR228C RAD61Q99359 647 aa1.84□□□□□ -2.12
PCF11YDR228C RAV1P47104 1357 aa1.83□□□□□ -2.12
PCF11YDR228C LEU4P06208 619 aaKnown RBP1.83□□□□□ -2.12
PCF11YDR228C RPS8AP0CX39 200 aaKnown RBP1.83□□□□□ -2.12
PCF11YDR228C RPS8BP0CX40 200 aaKnown RBP1.83□□□□□ -2.12
PCF11YDR228C NOP4P37838 685 aaKnown RBP1.83□□□□□ -2.12
PCF11YDR228C YBR225WP38321 900 aa1.83□□□□□ -2.12
PCF11YDR228C MSG5P38590 489 aa1.83□□□□□ -2.12
PCF11YDR228C OST1P41543 476 aaKnown RBP1.83□□□□□ -2.12
PCF11YDR228C HER2Q03557 464 aa1.83□□□□□ -2.12
PCF11YDR228C YDL007C-AQ2V2Q0 85 aa1.83□□□□□ -2.12
PCF11YDR228C GAL80P04387 435 aa1.82□□□□□ -2.12
PCF11YDR228C RPL31BP0C2H9 113 aaKnown RBP1.82□□□□□ -2.12
PCF11YDR228C MCM10P32354 571 aa1.82□□□□□ -2.12
PCF11YDR228C NOP16P40007 231 aaKnown RBP1.82□□□□□ -2.12
PCF11YDR228C MRX6P48564 524 aa1.82□□□□□ -2.12
PCF11YDR228C YGR066CP53242 292 aa1.82□□□□□ -2.12
PCF11YDR228C MTM1P53320 366 aa1.82□□□□□ -2.12
PCF11YDR228C HXT11P54862 567 aa1.82□□□□□ -2.12
PCF11YDR228C CTI6Q08923 506 aa1.82□□□□□ -2.12
PCF11YDR228C SEC53P07283 254 aaKnown RBP1.82□□□□□ -2.12
PCF11YDR228C YAR066WP0CX18 203 aa1.82□□□□□ -2.12
PCF11YDR228C YHR214WP0CX19 203 aa1.82□□□□□ -2.12
PCF11YDR228C TRX2P22803 104 aaKnown RBP1.82□□□□□ -2.12
PCF11YDR228C DAL2P25335 343 aa1.82□□□□□ -2.12
PCF11YDR228C MRP21P38175 177 aa1.82□□□□□ -2.12
PCF11YDR228C POP1P41812 875 aa1.82□□□□□ -2.12
PCF11YDR228C WWM1P43582 211 aaKnown RBP1.82□□□□□ -2.12
PCF11YDR228C SSN8P47821 323 aa1.82□□□□□ -2.12
PCF11YDR228C UPF3P48412 387 aaKnown RBP1.82□□□□□ -2.12
PCF11YDR228C YMR018WQ04364 514 aa1.82□□□□□ -2.12
PCF11YDR228C MRD1Q06106 887 aaKnown RBP1.82□□□□□ -2.12
PCF11YDR228C RCN2Q12044 265 aa1.82□□□□□ -2.12
PCF11YDR228C DFR1P07807 211 aaKnown RBP RIP-Chip data1.81□□□□□ -2.12not detected
PCF11YDR228C SAM1P10659 382 aaKnown RBP1.81□□□□□ -2.12
PCF11YDR228C SAM2P19358 384 aaKnown RBP1.81□□□□□ -2.12
PCF11YDR228C OLE1P21147 510 aaKnown RBP1.81□□□□□ -2.12
PCF11YDR228C ITR1P30605 584 aa1.81□□□□□ -2.12
PCF11YDR228C GYP6P32806 458 aa1.81□□□□□ -2.12
PCF11YDR228C UTH1P36135 365 aa1.81□□□□□ -2.12
PCF11YDR228C YBR137WP38276 179 aa1.81□□□□□ -2.12
PCF11YDR228C HAL1Q01766 294 aa1.81□□□□□ -2.12
PCF11YDR228C SEC39Q12745 709 aa1.81□□□□□ -2.12
PCF11YDR228C CBS1P14066 229 aa1.8□□□□□ -2.12
PCF11YDR228C SSH4P32343 579 aa1.8□□□□□ -2.12
PCF11YDR228C RIB5P38145 238 aa1.8□□□□□ -2.12
PCF11YDR228C MET28P40573 187 aa1.8□□□□□ -2.12
PCF11YDR228C VMA13P41807 478 aaKnown RBP1.8□□□□□ -2.12
PCF11YDR228C OCA1P50946 238 aaPredicted RBP1.8□□□□□ -2.12
PCF11YDR228C YGL108CP53139 140 aa1.8□□□□□ -2.12
PCF11YDR228C CAF130P53280 1122 aaPredicted RBP1.8□□□□□ -2.12
PCF11YDR228C MDG1P53885 366 aa1.8□□□□□ -2.12
PCF11YDR228C YMR181CQ03231 154 aa1.8□□□□□ -2.12
PCF11YDR228C NFT1P0CE68 1218 aa1.8□□□□□ -2.12
PCF11YDR228C HSP26P15992 214 aaKnown RBP RIP-Chip data1.8□□□□□ -2.12not detected
PCF11YDR228C ATP10P18496 279 aa1.8□□□□□ -2.12
PCF11YDR228C PCL1P24867 279 aa1.8□□□□□ -2.12
PCF11YDR228C TIP1P27654 210 aaPredicted RBP1.8□□□□□ -2.12
PCF11YDR228C SEC66P33754 206 aa1.8□□□□□ -2.12
PCF11YDR228C NCA3P46955 337 aa1.8□□□□□ -2.12
PCF11YDR228C PET130P47065 347 aa1.8□□□□□ -2.12
PCF11YDR228C BRO1P48582 844 aa1.8□□□□□ -2.12
PCF11YDR228C PEX25Q02969 394 aa1.8□□□□□ -2.12
PCF11YDR228C PEP3P27801 918 aa1.79□□□□□ -2.12
PCF11YDR228C KAR9P32526 644 aa1.79□□□□□ -2.12
PCF11YDR228C MNS1P32906 549 aa1.79□□□□□ -2.12
PCF11YDR228C YCR041WP37265 110 aa1.79□□□□□ -2.12
PCF11YDR228C THI2P38141 450 aa1.79□□□□□ -2.12
PCF11YDR228C CCT2P39076 527 aaKnown RBP1.79□□□□□ -2.12
PCF11YDR228C YIP1P53039 248 aa1.79□□□□□ -2.12
PCF11YDR228C VPS75P53853 264 aa1.79□□□□□ -2.12
PCF11YDR228C CWC25P53854 179 aaKnown RBP1.79□□□□□ -2.12
PCF11YDR228C FAB1P34756 2278 aa1.78□□□□□ -2.12
PCF11YDR228C AAC3P18238 307 aa1.78□□□□□ -2.12
PCF11YDR228C DPB3P27344 201 aa1.78□□□□□ -2.12
PCF11YDR228C HCS1P34243 683 aa1.78□□□□□ -2.12
PCF11YDR228C CBP4P37267 147 aa1.78□□□□□ -2.12
PCF11YDR228C REG2P38232 338 aa1.78□□□□□ -2.12
PCF11YDR228C TFG2P41896 400 aaPredicted RBP1.78□□□□□ -2.12
PCF11YDR228C NCS2P53923 493 aaPredicted RBP1.78□□□□□ -2.12
PCF11YDR228C KTR5P53966 522 aaPredicted RBP1.78□□□□□ -2.12
PCF11YDR228C PDS5Q04264 1277 aa1.78□□□□□ -2.12
Retrieved 100 of 5,963 RNA–protein pairs in 16.8 ms