RNA–Protein interactions for RNA: YDR227W

SIR4, Transcript of SIR protein involved in assembly of silent chromatin domains, yeastyeast

Gene SIR4, Length 4,077 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIR4YDR227W APA2P22108 325 aa2.06□□□□□ -2.08
SIR4YDR227W ASF2P32448 525 aaPredicted RBP2.06□□□□□ -2.08
SIR4YDR227W HCS1P34243 683 aa2.06□□□□□ -2.08
SIR4YDR227W MRPL16P38064 232 aa2.06□□□□□ -2.08
SIR4YDR227W SWC5P38326 303 aa2.06□□□□□ -2.08
SIR4YDR227W MSR1P38714 643 aa2.06□□□□□ -2.08
SIR4YDR227W RRF1P38771 230 aa2.06□□□□□ -2.08
SIR4YDR227W RTC3P38804 111 aaPredicted RBP2.06□□□□□ -2.08
SIR4YDR227W IRC6P43615 237 aa2.06□□□□□ -2.08
SIR4YDR227W MRK1P50873 501 aa2.06□□□□□ -2.08
SIR4YDR227W NRD1P53617 575 aaKnown RBP RIP-Chip data2.06□□□□□ -2.08not detected
SIR4YDR227W ARE2P53629 642 aaKnown RBP2.06□□□□□ -2.08
SIR4YDR227W HXT17P53631 564 aa2.06□□□□□ -2.08
SIR4YDR227W DCR2Q05924 578 aa2.06□□□□□ -2.08
SIR4YDR227W PEX27Q08580 376 aa2.06□□□□□ -2.08
SIR4YDR227W YPL260WQ08977 551 aa2.06□□□□□ -2.08
SIR4YDR227W YPT1P01123 206 aaKnown RBP2.06□□□□□ -2.08
SIR4YDR227W ZWF1P11412 505 aaKnown RBP2.06□□□□□ -2.08
SIR4YDR227W DBP5P20449 482 aaKnown RBP2.06□□□□□ -2.08
SIR4YDR227W MRPL8P22353 238 aa2.06□□□□□ -2.08
SIR4YDR227W DPB2P24482 689 aaPredicted RBP2.06□□□□□ -2.08
SIR4YDR227W PEX34P25584 144 aa2.06□□□□□ -2.08
SIR4YDR227W TCA17P32613 152 aa2.06□□□□□ -2.08
SIR4YDR227W KTR2P33550 425 aa2.06□□□□□ -2.08
SIR4YDR227W EMC3P36039 253 aa2.06□□□□□ -2.08
SIR4YDR227W DAD2P36162 133 aa2.06□□□□□ -2.08
SIR4YDR227W ECM8P38246 354 aa2.06□□□□□ -2.08
SIR4YDR227W PEX32P38292 413 aa2.06□□□□□ -2.08
SIR4YDR227W PET130P47065 347 aa2.06□□□□□ -2.08
SIR4YDR227W TOM22P49334 152 aa2.06□□□□□ -2.08
SIR4YDR227W ASE1P50275 885 aa2.06□□□□□ -2.08
SIR4YDR227W ZPR1P53303 486 aaKnown RBP2.06□□□□□ -2.08
SIR4YDR227W MNT4P53745 580 aa2.06□□□□□ -2.08
SIR4YDR227W ORC3P54790 616 aa2.06□□□□□ -2.08
SIR4YDR227W APM1Q00776 475 aaPredicted RBP2.06□□□□□ -2.08
SIR4YDR227W RPM2Q02773 1202 aa2.06□□□□□ -2.08
SIR4YDR227W CCE1Q03702 353 aa2.06□□□□□ -2.08
SIR4YDR227W TGL5Q12043 749 aa2.06□□□□□ -2.08
SIR4YDR227W POM33Q12164 279 aa2.06□□□□□ -2.08
SIR4YDR227W CMC2Q3E7A4 109 aa2.06□□□□□ -2.08
SIR4YDR227W TY2A-LR1P0C2J4 438 aa2.05□□□□□ -2.08
SIR4YDR227W TY2A-FP0CX61 438 aa2.05□□□□□ -2.08
SIR4YDR227W TY2A-GR2P0CX62 438 aa2.05□□□□□ -2.08
SIR4YDR227W TY2A-CP25383 438 aa2.05□□□□□ -2.08
SIR4YDR227W TSA1P34760 196 aaKnown RBP2.05□□□□□ -2.08
SIR4YDR227W TUL1P36096 758 aa2.05□□□□□ -2.08
SIR4YDR227W NTC20P38302 140 aaPredicted RBP2.05□□□□□ -2.08
SIR4YDR227W MIC12P38341 106 aa2.05□□□□□ -2.08
SIR4YDR227W TRM5P38793 499 aa2.05□□□□□ -2.08
SIR4YDR227W LIN1P38852 340 aaPredicted RBP2.05□□□□□ -2.08
SIR4YDR227W LYS9P38999 446 aa2.05□□□□□ -2.08
SIR4YDR227W DHH1P39517 506 aaKnown RBP2.05□□□□□ -2.08
SIR4YDR227W YIR042CP40586 236 aa2.05□□□□□ -2.08
SIR4YDR227W MTD1Q02046 320 aaKnown RBP2.05□□□□□ -2.08
SIR4YDR227W TY2A-DR2Q03483 438 aa2.05□□□□□ -2.08
SIR4YDR227W SMP3Q04174 516 aa2.05□□□□□ -2.08
SIR4YDR227W MYO5Q04439 1219 aaKnown RBP2.05□□□□□ -2.08
SIR4YDR227W RTT109Q07794 436 aa2.05□□□□□ -2.08
SIR4YDR227W TY2A-BQ12260 438 aa2.05□□□□□ -2.08
SIR4YDR227W TY2A-OR2Q12293 438 aa2.05□□□□□ -2.08
SIR4YDR227W TY2A-DR1Q12392 438 aa2.05□□□□□ -2.08
SIR4YDR227W TY2A-OR1Q12439 438 aa2.05□□□□□ -2.08
SIR4YDR227W YPR053CQ6Q5F3 151 aa2.05□□□□□ -2.08
SIR4YDR227W TY2A-DR3Q99303 438 aa2.05□□□□□ -2.08
SIR4YDR227W ECM29P38737 1868 aa2.05□□□□□ -2.08
SIR4YDR227W TAO3P40468 2376 aa2.05□□□□□ -2.08
SIR4YDR227W PET122P10355 254 aa2.05□□□□□ -2.08
SIR4YDR227W RSR1P13856 272 aa2.05□□□□□ -2.08
SIR4YDR227W CDC26P14724 124 aa2.05□□□□□ -2.08
SIR4YDR227W NUP1P20676 1076 aa2.05□□□□□ -2.08
SIR4YDR227W DBR1P24309 405 aaKnown RBP2.05□□□□□ -2.08
SIR4YDR227W RDS1P25611 832 aa2.05□□□□□ -2.08
SIR4YDR227W IDH1P28834 360 aaKnown RBP RIP-Chip data2.05□□□□□ -2.08not detected
SIR4YDR227W AFG1P32317 509 aa2.05□□□□□ -2.08
SIR4YDR227W ERG3P32353 365 aa2.05□□□□□ -2.08
SIR4YDR227W ERG1P32476 496 aaKnown RBP2.05□□□□□ -2.08
SIR4YDR227W CSG2P35206 410 aa2.05□□□□□ -2.08
SIR4YDR227W MCR1P36060 302 aaKnown RBP2.05□□□□□ -2.08
SIR4YDR227W SRX1P36077 127 aa2.05□□□□□ -2.08
SIR4YDR227W ADH5P38113 351 aaKnown RBP2.05□□□□□ -2.08
SIR4YDR227W YHL044WP38727 235 aa2.05□□□□□ -2.08
SIR4YDR227W UTP9P38882 575 aaKnown RBP2.05□□□□□ -2.08
SIR4YDR227W GDS1P41913 522 aa2.05□□□□□ -2.08
SIR4YDR227W RTT101P47050 842 aa2.05□□□□□ -2.08
SIR4YDR227W RAI1P53063 387 aaKnown RBP2.05□□□□□ -2.08
SIR4YDR227W PDR16P53860 351 aaKnown RBP2.05□□□□□ -2.08
SIR4YDR227W ECM18Q04623 453 aa2.05□□□□□ -2.08
SIR4YDR227W ERV41Q04651 352 aa2.05□□□□□ -2.08
SIR4YDR227W IWR1Q07532 353 aaPredicted RBP2.05□□□□□ -2.08
SIR4YDR227W CRT10Q08226 957 aa2.05□□□□□ -2.08
SIR4YDR227W UBX3Q12229 455 aa2.05□□□□□ -2.08
SIR4YDR227W RPL28P02406 149 aaKnown RBP2.05□□□□□ -2.08
SIR4YDR227W TAL1P15019 335 aaKnown RBP2.05□□□□□ -2.08
SIR4YDR227W SRB2P34162 210 aa2.05□□□□□ -2.08
SIR4YDR227W YHL012WP38709 493 aa2.05□□□□□ -2.08
SIR4YDR227W VMA22P38784 181 aa2.05□□□□□ -2.08
SIR4YDR227W ISC1P40015 477 aaKnown RBP2.05□□□□□ -2.08
SIR4YDR227W GIP2P40036 548 aa2.05□□□□□ -2.08
SIR4YDR227W LYS12P40495 371 aaKnown RBP2.05□□□□□ -2.08
SIR4YDR227W YFL066CP43538 392 aa2.05□□□□□ -2.08
Retrieved 100 of 5,963 RNA–protein pairs in 23.1 ms