RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 PCDHA1Q9Y5I3 950 aa13.48□□□□□ -0.25
CLN3-257ENST00000637110 LOC102724159A0A0B4J2E5 919 aa13.47□□□□□ -0.25
CLN3-257ENST00000637110 FAM86C2PA6NEL3 165 aa13.47□□□□□ -0.25
CLN3-257ENST00000637110 ARVCFO00192 962 aa13.47□□□□□ -0.25
CLN3-257ENST00000637110 TLL1O43897 1013 aa13.47□□□□□ -0.25
CLN3-257ENST00000637110 DDAH1O94760 285 aa13.47□□□□□ -0.25
CLN3-257ENST00000637110 CENPBP07199 599 aaPredicted RBP13.47□□□□□ -0.25
CLN3-257ENST00000637110 POU3F3P20264 500 aaPredicted RBP13.47□□□□□ -0.25
CLN3-257ENST00000637110 PTGS1P23219 599 aa13.47□□□□□ -0.25
CLN3-257ENST00000637110 CST5P28325 142 aaPredicted RBP13.47□□□□□ -0.25
CLN3-257ENST00000637110 MRE11P49959 708 aa13.47□□□□□ -0.25
CLN3-257ENST00000637110 PWP2Q15269 919 aaKnown RBP13.47□□□□□ -0.25
CLN3-257ENST00000637110 ARHGEF16Q5VV41 709 aa13.47□□□□□ -0.25
CLN3-257ENST00000637110 SYNE3Q6ZMZ3 975 aa13.47□□□□□ -0.25
CLN3-257ENST00000637110 SYTL5Q8TDW5 730 aaPredicted RBP13.47□□□□□ -0.25
CLN3-257ENST00000637110 MORC4Q8TE76 937 aa13.47□□□□□ -0.25
CLN3-257ENST00000637110 TAAR1Q96RJ0 339 aa13.47□□□□□ -0.25
CLN3-257ENST00000637110 RMDN3Q96TC7 470 aa13.47□□□□□ -0.25
CLN3-257ENST00000637110 LRRC2Q9BYS8 371 aa13.47□□□□□ -0.25
CLN3-257ENST00000637110 UPF3AQ9H1J1 476 aaKnown RBP13.47□□□□□ -0.25
CLN3-257ENST00000637110 LY9Q9HBG7 655 aa13.47□□□□□ -0.25
CLN3-257ENST00000637110 SLC12A7Q9Y666 1083 aa13.47□□□□□ -0.25
CLN3-257ENST00000637110 SLC4A7Q9Y6M7 1214 aa13.47□□□□□ -0.25
CLN3-257ENST00000637110 TRANK1O15050 2925 aa13.46□□□□□ -0.25
CLN3-257ENST00000637110 PRR33A8MZF0 331 aa13.46□□□□□ -0.25
CLN3-257ENST00000637110 PI4K2BG5E9Z4 385 aa13.46□□□□□ -0.25
CLN3-257ENST00000637110 SH2B2O14492 632 aaPredicted RBP13.46□□□□□ -0.25
CLN3-257ENST00000637110 EIF2AK2P19525 551 aaKnown RBP13.46□□□□□ -0.25
CLN3-257ENST00000637110 CYP2C18P33260 490 aa13.46□□□□□ -0.25
CLN3-257ENST00000637110 TROAPQ12815 778 aa13.46□□□□□ -0.25
CLN3-257ENST00000637110 PPP2R5BQ15173 497 aa13.46□□□□□ -0.25
CLN3-257ENST00000637110 FSCN1Q16658 493 aaKnown RBP13.46□□□□□ -0.25
CLN3-257ENST00000637110 CCSAPQ6IQ19 270 aaPredicted RBP13.46□□□□□ -0.25
CLN3-257ENST00000637110 CXCL17Q6UXB2 119 aa13.46□□□□□ -0.25
CLN3-257ENST00000637110 OTOP2Q7RTS6 562 aa13.46□□□□□ -0.25
CLN3-257ENST00000637110 RAB11FIP4Q86YS3 637 aa13.46□□□□□ -0.25
CLN3-257ENST00000637110 FAM126BQ8IXS8 530 aa13.46□□□□□ -0.25
CLN3-257ENST00000637110 OR6J1Q8NGC5 347 aa13.46□□□□□ -0.25
CLN3-257ENST00000637110 NSUN6Q8TEA1 469 aaKnown RBP13.46□□□□□ -0.25
CLN3-257ENST00000637110 HLA-CQ95604 372 aa13.46□□□□□ -0.25
CLN3-257ENST00000637110 NEK1Q96PY6 1258 aa13.46□□□□□ -0.25
CLN3-257ENST00000637110 MTA3Q9BTC8 594 aa13.46□□□□□ -0.25
CLN3-257ENST00000637110 RIOX1Q9H6W3 641 aa13.46□□□□□ -0.25
CLN3-257ENST00000637110 C11orf16Q9NQ32 467 aa13.46□□□□□ -0.25
CLN3-257ENST00000637110 SEC63Q9UGP8 760 aaKnown RBP13.46□□□□□ -0.25
CLN3-257ENST00000637110 GNEQ9Y223 722 aaKnown RBP13.46□□□□□ -0.25
CLN3-257ENST00000637110 MTCH2Q9Y6C9 303 aa13.46□□□□□ -0.25
CLN3-257ENST00000637110 PNMA6FA0A0J9YX94 578 aa13.45□□□□□ -0.26
CLN3-257ENST00000637110 CALM1P0DP23 149 aa13.45□□□□□ -0.26
CLN3-257ENST00000637110 CALM2P0DP24 149 aa13.45□□□□□ -0.26
CLN3-257ENST00000637110 CALM3P0DP25 149 aa13.45□□□□□ -0.26
CLN3-257ENST00000637110 RXRAP19793 462 aa13.45□□□□□ -0.26
CLN3-257ENST00000637110 GNAQP50148 359 aa13.45□□□□□ -0.26
CLN3-257ENST00000637110 RABGGTBP53611 331 aa13.45□□□□□ -0.26
CLN3-257ENST00000637110 FGD1P98174 961 aa13.45□□□□□ -0.26
CLN3-257ENST00000637110 DUSP28Q4G0W2 176 aa13.45□□□□□ -0.26
CLN3-257ENST00000637110 BRDTQ58F21 947 aaPredicted RBP13.45□□□□□ -0.26
CLN3-257ENST00000637110 TMEM63BQ5T3F8 832 aa13.45□□□□□ -0.26
CLN3-257ENST00000637110 SEPT14Q6ZU15 432 aa13.45□□□□□ -0.26
CLN3-257ENST00000637110 RPUSD2Q8IZ73 545 aaKnown RBP13.45□□□□□ -0.26
CLN3-257ENST00000637110 SCFD2Q8WU76 684 aa13.45□□□□□ -0.26
CLN3-257ENST00000637110 MTMR8Q96EF0 704 aa13.45□□□□□ -0.26
CLN3-257ENST00000637110 RRP36Q96EU6 259 aaKnown RBP13.45□□□□□ -0.26
CLN3-257ENST00000637110 MAF1Q9H063 256 aa13.45□□□□□ -0.26
CLN3-257ENST00000637110 HIPK3Q9H422 1215 aa13.45□□□□□ -0.26
CLN3-257ENST00000637110 NAP1L2Q9ULW6 460 aaPredicted RBP13.45□□□□□ -0.26
CLN3-257ENST00000637110 Q9Y3F1 56 aa13.45□□□□□ -0.26
CLN3-257ENST00000637110 LCTP09848 1927 aa13.45□□□□□ -0.26
CLN3-257ENST00000637110 BAZ2BQ9UIF8 2168 aaKnown RBP13.44□□□□□ -0.26
CLN3-257ENST00000637110 GCOM1H8Y6P7 765 aaPredicted RBP13.44□□□□□ -0.26
CLN3-257ENST00000637110 CYTH3O43739 400 aa13.44□□□□□ -0.26
CLN3-257ENST00000637110 PPP1R11O60927 126 aaPredicted RBP13.44□□□□□ -0.26
CLN3-257ENST00000637110 MYL3P08590 195 aa13.44□□□□□ -0.26
CLN3-257ENST00000637110 POLR2MP0CAP2 368 aa13.44□□□□□ -0.26
CLN3-257ENST00000637110 TXNP10599 105 aaKnown RBP13.44□□□□□ -0.26
CLN3-257ENST00000637110 MYCLP12524 364 aaPredicted RBP13.44□□□□□ -0.26
CLN3-257ENST00000637110 ATP2A2P16615 1042 aaKnown RBP13.44□□□□□ -0.26
CLN3-257ENST00000637110 HOXA13P31271 388 aaPredicted RBP13.44□□□□□ -0.26
CLN3-257ENST00000637110 LIFRP42702 1097 aa13.44□□□□□ -0.26
CLN3-257ENST00000637110 KRT32Q14532 448 aa13.44□□□□□ -0.26
CLN3-257ENST00000637110 TTLL4Q14679 1199 aa13.44□□□□□ -0.26
CLN3-257ENST00000637110 STXBP2Q15833 593 aa13.44□□□□□ -0.26
CLN3-257ENST00000637110 FCHSD1Q86WN1 690 aa13.44□□□□□ -0.26
CLN3-257ENST00000637110 TCEANC2Q96MN5 208 aa13.44□□□□□ -0.26
CLN3-257ENST00000637110 IWS1Q96ST2 819 aa13.44□□□□□ -0.26
CLN3-257ENST00000637110 LZTS2Q9BRK4 669 aa13.44□□□□□ -0.26
CLN3-257ENST00000637110 PPP4R2Q9NY27 417 aa13.44□□□□□ -0.26
CLN3-257ENST00000637110 COL20A1Q9P218 1284 aa13.44□□□□□ -0.26
CLN3-257ENST00000637110 ZBBXA8MT70 800 aa13.43□□□□□ -0.26
CLN3-257ENST00000637110 NKRFO15226 690 aaKnown RBP eCLIP13.43□□□□□ -0.26
CLN3-257ENST00000637110 CTAGE5O15320 804 aa13.43□□□□□ -0.26
CLN3-257ENST00000637110 CABYRO75952 493 aa13.43□□□□□ -0.26
CLN3-257ENST00000637110 CD4P01730 458 aa13.43□□□□□ -0.26
CLN3-257ENST00000637110 EDNRBP24530 442 aa13.43□□□□□ -0.26
CLN3-257ENST00000637110 CPT1AP50416 773 aa13.43□□□□□ -0.26
CLN3-257ENST00000637110 CHMP4BP1P59074 171 aa13.43□□□□□ -0.26
CLN3-257ENST00000637110 SLC35G1Q2M3R5 365 aa13.43□□□□□ -0.26
CLN3-257ENST00000637110 DHX32Q7L7V1 743 aaKnown RBP13.43□□□□□ -0.26
CLN3-257ENST00000637110 MICU3Q86XE3 530 aa13.43□□□□□ -0.26
CLN3-257ENST00000637110 CMTR1Q8N1G2 835 aaKnown RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms