RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 BVESQ8NE79 360 aa5.13□□□□□ -1.59
SCN1A-208ENST00000625916 COPS5Q92905 334 aa5.13□□□□□ -1.59
SCN1A-208ENST00000625916 GPRASP2Q96D09 838 aa5.13□□□□□ -1.59
SCN1A-208ENST00000625916 LCORQ96JN0 433 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-208ENST00000625916 APBA2Q99767 749 aa5.13□□□□□ -1.59
SCN1A-208ENST00000625916 YIPF4Q9BSR8 244 aa5.13□□□□□ -1.59
SCN1A-208ENST00000625916 C1QTNF3Q9BXJ4 246 aa5.13□□□□□ -1.59
SCN1A-208ENST00000625916 KRTAP3-1Q9BYR8 98 aa5.13□□□□□ -1.59
SCN1A-208ENST00000625916 EMC9Q9Y3B6 208 aa5.13□□□□□ -1.59
SCN1A-208ENST00000625916 NAT2P11245 290 aa5.12□□□□□ -1.59
SCN1A-208ENST00000625916 STAT5AP42229 794 aa5.12□□□□□ -1.59
SCN1A-208ENST00000625916 PRAMEF18Q5VWM3 479 aa5.12□□□□□ -1.59
SCN1A-208ENST00000625916 LIMS2Q7Z4I7 341 aa5.12□□□□□ -1.59
SCN1A-208ENST00000625916 SLC16A11Q8NCK7 471 aa5.12□□□□□ -1.59
SCN1A-208ENST00000625916 DVL3Q92997 716 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-208ENST00000625916 NGRNQ9NPE2 291 aaKnown RBP5.12□□□□□ -1.59
SCN1A-208ENST00000625916 ST6GALNAC2Q9UJ37 374 aa5.12□□□□□ -1.59
SCN1A-208ENST00000625916 SCAMP3O14828 347 aaKnown RBP5.11□□□□□ -1.59
SCN1A-208ENST00000625916 CYP1A1P04798 512 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-208ENST00000625916 SLC6A11P48066 632 aa5.11□□□□□ -1.59
SCN1A-208ENST00000625916 NASPP49321 788 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-208ENST00000625916 RPL11P62913 178 aaKnown RBP5.11□□□□□ -1.59
SCN1A-208ENST00000625916 NKX3-2P78367 333 aa5.11□□□□□ -1.59
SCN1A-208ENST00000625916 INF2Q27J81 1249 aa5.11□□□□□ -1.59
SCN1A-208ENST00000625916 MROH9Q5TGP6 573 aa5.11□□□□□ -1.59
SCN1A-208ENST00000625916 GTF2IRD2BQ6EKJ0 949 aa5.11□□□□□ -1.59
SCN1A-208ENST00000625916 GTF2IRD2Q86UP8 949 aa5.11□□□□□ -1.59
SCN1A-208ENST00000625916 FAM126BQ8IXS8 530 aa5.11□□□□□ -1.59
SCN1A-208ENST00000625916 ZNF513Q8N8E2 541 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-208ENST00000625916 RASGRP4Q8TDF6 673 aa5.11□□□□□ -1.59
SCN1A-208ENST00000625916 KISS1RQ969F8 398 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-208ENST00000625916 LAMTOR5O43504 91 aa5.1□□□□□ -1.59
SCN1A-208ENST00000625916 FPR2P25090 351 aa5.1□□□□□ -1.59
SCN1A-208ENST00000625916 CASP7P55210 303 aa5.1□□□□□ -1.59
SCN1A-208ENST00000625916 SURF1Q15526 300 aa5.1□□□□□ -1.59
SCN1A-208ENST00000625916 IQCEQ6IPM2 695 aa5.1□□□□□ -1.59
SCN1A-208ENST00000625916 CEP68Q76N32 757 aa5.1□□□□□ -1.59
SCN1A-208ENST00000625916 PLEKHH3Q7Z736 793 aa5.1□□□□□ -1.59
SCN1A-208ENST00000625916 SH3RF3Q8TEJ3 882 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-208ENST00000625916 TRMT2BQ96GJ1 504 aaKnown RBP5.1□□□□□ -1.59
SCN1A-208ENST00000625916 SHDQ96IW2 340 aa5.1□□□□□ -1.59
SCN1A-208ENST00000625916 CYP26B1Q9NR63 512 aa5.1□□□□□ -1.59
SCN1A-208ENST00000625916 TIMM13Q9Y5L4 95 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-208ENST00000625916 C9orf118A6NHY6 69 aa5.09□□□□□ -1.59
SCN1A-208ENST00000625916 SUV39H1O43463 412 aa5.09□□□□□ -1.59
SCN1A-208ENST00000625916 MYO1BO43795 1136 aa5.09□□□□□ -1.59
SCN1A-208ENST00000625916 C6P13671 934 aa5.09□□□□□ -1.59
SCN1A-208ENST00000625916 ZNF143P52747 638 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-208ENST00000625916 PRR31Q5SQ13 230 aa5.09□□□□□ -1.59
SCN1A-208ENST00000625916 RIOX2Q8IUF8 465 aa5.09□□□□□ -1.59
SCN1A-208ENST00000625916 TRIM59Q8IWR1 403 aa5.09□□□□□ -1.59
SCN1A-208ENST00000625916 FRS2Q8WU20 508 aa5.09□□□□□ -1.59
SCN1A-208ENST00000625916 SSBP3Q9BWW4 388 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-208ENST00000625916 NKX2-4Q9H2Z4 354 aa5.09□□□□□ -1.59
SCN1A-208ENST00000625916 L2HGDHQ9H9P8 463 aa5.09□□□□□ -1.59
SCN1A-208ENST00000625916 COA3Q9Y2R0 106 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-208ENST00000625916 NPEPPSL1A6NEC2 478 aa5.08□□□□□ -1.6
SCN1A-208ENST00000625916 RECKO95980 971 aa5.08□□□□□ -1.6
SCN1A-208ENST00000625916 BCL6P41182 706 aa5.08□□□□□ -1.6
SCN1A-208ENST00000625916 GDF5P43026 501 aa5.08□□□□□ -1.6
SCN1A-208ENST00000625916 GTF2A2P52657 109 aa5.08□□□□□ -1.6
SCN1A-208ENST00000625916 NCAPHQ15003 741 aa5.08□□□□□ -1.6
SCN1A-208ENST00000625916 TMCO4Q5TGY1 634 aa5.08□□□□□ -1.6
SCN1A-208ENST00000625916 SPRED1Q7Z699 444 aa5.08□□□□□ -1.6
SCN1A-208ENST00000625916 NPLOC4Q8TAT6 608 aa5.08□□□□□ -1.6
SCN1A-208ENST00000625916 DIO2Q92813 273 aa5.08□□□□□ -1.6
SCN1A-208ENST00000625916 TMEM169Q96HH4 297 aa5.08□□□□□ -1.6
SCN1A-208ENST00000625916 ZSWIM3Q96MP5 696 aa5.08□□□□□ -1.6
SCN1A-208ENST00000625916 CLIC6Q96NY7 704 aa5.08□□□□□ -1.6
SCN1A-208ENST00000625916 LGR4Q9BXB1 951 aa5.08□□□□□ -1.6
SCN1A-208ENST00000625916 TMEM168Q9H0V1 697 aa5.08□□□□□ -1.6
SCN1A-208ENST00000625916 JADE2Q9NQC1 790 aa5.08□□□□□ -1.6
SCN1A-208ENST00000625916 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-208ENST00000625916 B4GALT3O60512 393 aa5.07□□□□□ -1.6
SCN1A-208ENST00000625916 ZNF28P17035 718 aa5.07□□□□□ -1.6
SCN1A-208ENST00000625916 TACR2P21452 398 aa5.07□□□□□ -1.6
SCN1A-208ENST00000625916 ADAM9Q13443 819 aa5.07□□□□□ -1.6
SCN1A-208ENST00000625916 CHRNA2Q15822 529 aa5.07□□□□□ -1.6
SCN1A-208ENST00000625916 CR1LQ2VPA4 569 aa5.07□□□□□ -1.6
SCN1A-208ENST00000625916 E4F1Q66K89 784 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-208ENST00000625916 KRTAP5-3Q6L8H2 238 aa5.07□□□□□ -1.6
SCN1A-208ENST00000625916 METTL16Q86W50 562 aaKnown RBP5.07□□□□□ -1.6
SCN1A-208ENST00000625916 FAM169BQ8N8A8 192 aa5.07□□□□□ -1.6
SCN1A-208ENST00000625916 BTN2A2Q8WVV5 523 aa5.07□□□□□ -1.6
SCN1A-208ENST00000625916 ANAPC16Q96DE5 110 aa5.07□□□□□ -1.6
SCN1A-208ENST00000625916 TOE1Q96GM8 510 aaKnown RBP5.07□□□□□ -1.6
SCN1A-208ENST00000625916 CHAMP1Q96JM3 812 aa5.07□□□□□ -1.6
SCN1A-208ENST00000625916 MRGPRX3Q96LB0 322 aa5.07□□□□□ -1.6
SCN1A-208ENST00000625916 SORCS2Q96PQ0 1159 aa5.07□□□□□ -1.6
SCN1A-208ENST00000625916 PPP4R1LQ9P1A2 415 aa5.07□□□□□ -1.6
SCN1A-208ENST00000625916 CROTQ9UKG9 612 aa5.07□□□□□ -1.6
SCN1A-208ENST00000625916 X6R8D5 127 aa5.07□□□□□ -1.6
SCN1A-208ENST00000625916 MEFVO15553 781 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-208ENST00000625916 CYP7B1O75881 506 aa5.06□□□□□ -1.6
SCN1A-208ENST00000625916 SNRPB2P08579 225 aaKnown RBP5.06□□□□□ -1.6
SCN1A-208ENST00000625916 IL13P35225 146 aa5.06□□□□□ -1.6
SCN1A-208ENST00000625916 ECI1P42126 302 aa5.06□□□□□ -1.6
SCN1A-208ENST00000625916 GJA8P48165 433 aa5.06□□□□□ -1.6
SCN1A-208ENST00000625916 HMGA2P52926 109 aa5.06□□□□□ -1.6
SCN1A-208ENST00000625916 KCNAB2Q13303 367 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms