RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 OXER1Q8TDS5 423 aa15.49■□□□□ 0.07
LINC00540-202ENST00000616974 PCDHA6Q9UN73 950 aa15.49■□□□□ 0.07
LINC00540-202ENST00000616974 PCDHA8Q9Y5H6 950 aa15.49■□□□□ 0.07
LINC00540-202ENST00000616974 FAM205CA6NFA0 338 aa15.49■□□□□ 0.07
LINC00540-202ENST00000616974 FARP2O94887 1054 aaPredicted RBP15.49■□□□□ 0.07
LINC00540-202ENST00000616974 RGS19P49795 217 aa15.49■□□□□ 0.07
LINC00540-202ENST00000616974 CUL5Q93034 780 aa15.49■□□□□ 0.07
LINC00540-202ENST00000616974 ZMYND12Q9H0C1 365 aa15.49■□□□□ 0.07
LINC00540-202ENST00000616974 ORC3Q9UBD5 711 aaPredicted RBP15.49■□□□□ 0.07
LINC00540-202ENST00000616974 FAM184BQ9ULE4 1060 aa15.49■□□□□ 0.07
LINC00540-202ENST00000616974 DYNC1LI2O43237 492 aaPredicted RBP15.48■□□□□ 0.07
LINC00540-202ENST00000616974 C6orf222P0C671 652 aaPredicted RBP15.48■□□□□ 0.07
LINC00540-202ENST00000616974 RARBP10826 455 aa15.48■□□□□ 0.07
LINC00540-202ENST00000616974 EARS2Q5JPH6 523 aaKnown RBP15.48■□□□□ 0.07
LINC00540-202ENST00000616974 CCDC62Q6P9F0 684 aa15.48■□□□□ 0.07
LINC00540-202ENST00000616974 TMX3Q96JJ7 454 aa15.48■□□□□ 0.07
LINC00540-202ENST00000616974 VTA1Q9NP79 307 aa15.48■□□□□ 0.07
LINC00540-202ENST00000616974 DEXIO95424 95 aa15.47■□□□□ 0.07
LINC00540-202ENST00000616974 ITGB5P18084 799 aa15.47■□□□□ 0.07
LINC00540-202ENST00000616974 ATN1P54259 1190 aaPredicted RBP15.47■□□□□ 0.07
LINC00540-202ENST00000616974 AKAP17AQ02040 695 aaKnown RBP15.47■□□□□ 0.07
LINC00540-202ENST00000616974 GUCY1B3Q02153 619 aa15.47■□□□□ 0.07
LINC00540-202ENST00000616974 CCSAPQ6IQ19 270 aaPredicted RBP15.47■□□□□ 0.07
LINC00540-202ENST00000616974 TLK2Q86UE8 772 aa15.47■□□□□ 0.07
LINC00540-202ENST00000616974 ANO3Q9BYT9 981 aa15.47■□□□□ 0.07
LINC00540-202ENST00000616974 PKD2L1Q9P0L9 805 aa15.47■□□□□ 0.07
LINC00540-202ENST00000616974 EIF5BO60841 1220 aaKnown RBP15.47■□□□□ 0.07
LINC00540-202ENST00000616974 STXBP2Q15833 593 aa15.47■□□□□ 0.07
LINC00540-202ENST00000616974 TRIM22Q8IYM9 498 aa15.47■□□□□ 0.07
LINC00540-202ENST00000616974 SCN10AQ9Y5Y9 1956 aa15.46■□□□□ 0.07
LINC00540-202ENST00000616974 RBM47A0AV96 593 aaKnown RBP15.46■□□□□ 0.07
LINC00540-202ENST00000616974 ATP9AO75110 1047 aa15.46■□□□□ 0.07
LINC00540-202ENST00000616974 DUSP11O75319 330 aaKnown RBP15.46■□□□□ 0.07
LINC00540-202ENST00000616974 TXNP10599 105 aaKnown RBP15.46■□□□□ 0.07
LINC00540-202ENST00000616974 COL6A1P12109 1028 aa15.46■□□□□ 0.07
LINC00540-202ENST00000616974 DUSP28Q4G0W2 176 aa15.46■□□□□ 0.07
LINC00540-202ENST00000616974 GJA10Q969M2 543 aa15.46■□□□□ 0.07
LINC00540-202ENST00000616974 SENP6Q9GZR1 1112 aaPredicted RBP15.46■□□□□ 0.07
LINC00540-202ENST00000616974 NRBP1Q9UHY1 535 aa15.46■□□□□ 0.07
LINC00540-202ENST00000616974 M0R2N6 131 aa15.46■□□□□ 0.06
LINC00540-202ENST00000616974 NR5A1Q13285 461 aa15.46■□□□□ 0.06
LINC00540-202ENST00000616974 KCNA10Q16322 511 aa15.46■□□□□ 0.06
LINC00540-202ENST00000616974 PPP1R18Q6NYC8 613 aa15.46■□□□□ 0.06
LINC00540-202ENST00000616974 KLHDC9Q8NEP7 349 aa15.46■□□□□ 0.06
LINC00540-202ENST00000616974 IWS1Q96ST2 819 aa15.46■□□□□ 0.06
LINC00540-202ENST00000616974 EIF3JO75822 258 aaKnown RBP15.45■□□□□ 0.06
LINC00540-202ENST00000616974 LRRC26Q2I0M4 334 aa15.45■□□□□ 0.06
LINC00540-202ENST00000616974 CRYGNQ8WXF5 182 aa15.45■□□□□ 0.06
LINC00540-202ENST00000616974 ALG1Q9BT22 464 aa15.45■□□□□ 0.06
LINC00540-202ENST00000616974 MAP3K20Q9NYL2 800 aaKnown RBP15.45■□□□□ 0.06
LINC00540-202ENST00000616974 DDX41Q9UJV9 622 aaKnown RBP15.45■□□□□ 0.06
LINC00540-202ENST00000616974 STK36Q9NRP7 1315 aa15.44■□□□□ 0.06
LINC00540-202ENST00000616974 SPDYE3A6NKU9 549 aa15.44■□□□□ 0.06
LINC00540-202ENST00000616974 FAM86B1E9PN63 330 aa15.44■□□□□ 0.06
LINC00540-202ENST00000616974 WNT7AO00755 349 aa15.44■□□□□ 0.06
LINC00540-202ENST00000616974 FAM86B2P0C5J1 330 aa15.44■□□□□ 0.06
LINC00540-202ENST00000616974 UBA1P22314 1058 aaKnown RBP15.44■□□□□ 0.06
LINC00540-202ENST00000616974 MRPL12P52815 198 aaKnown RBP15.44■□□□□ 0.06
LINC00540-202ENST00000616974 GJA9P57773 515 aa15.44■□□□□ 0.06
LINC00540-202ENST00000616974 NLRP5P59047 1200 aa15.44■□□□□ 0.06
LINC00540-202ENST00000616974 ARHGAP1Q07960 439 aa15.44■□□□□ 0.06
LINC00540-202ENST00000616974 GNASQ5JWF2 1037 aa15.44■□□□□ 0.06
LINC00540-202ENST00000616974 CXCL17Q6UXB2 119 aa15.44■□□□□ 0.06
LINC00540-202ENST00000616974 REXO1Q8N1G1 1221 aaKnown RBP15.44■□□□□ 0.06
LINC00540-202ENST00000616974 INPP4AQ96PE3 977 aaPredicted RBP15.44■□□□□ 0.06
LINC00540-202ENST00000616974 PHF20Q9BVI0 1012 aa15.44■□□□□ 0.06
LINC00540-202ENST00000616974 ESYT2A0FGR8 921 aa15.44■□□□□ 0.06
LINC00540-202ENST00000616974 hCG_1984214I3L0E3 225 aa15.44■□□□□ 0.06
LINC00540-202ENST00000616974 MSCO60682 206 aa15.44■□□□□ 0.06
LINC00540-202ENST00000616974 ASGR1P07306 291 aa15.44■□□□□ 0.06
LINC00540-202ENST00000616974 CCND2P30279 289 aa15.44■□□□□ 0.06
LINC00540-202ENST00000616974 HSDL1Q3SXM5 330 aa15.44■□□□□ 0.06
LINC00540-202ENST00000616974 PCNX4Q63HM2 1172 aa15.44■□□□□ 0.06
LINC00540-202ENST00000616974 IQSEC1Q6DN90 963 aa15.44■□□□□ 0.06
LINC00540-202ENST00000616974 ZNF713Q8N859 430 aaPredicted RBP15.44■□□□□ 0.06
LINC00540-202ENST00000616974 SCFD2Q8WU76 684 aa15.44■□□□□ 0.06
LINC00540-202ENST00000616974 UPF3AQ9H1J1 476 aaKnown RBP15.44■□□□□ 0.06
LINC00540-202ENST00000616974 MRVI1Q9Y6F6 885 aa15.44■□□□□ 0.06
LINC00540-202ENST00000616974 CHD7Q9P2D1 2997 aa15.44■□□□□ 0.06
LINC00540-202ENST00000616974 DNM1LO00429 736 aa15.43■□□□□ 0.06
LINC00540-202ENST00000616974 ST18O60284 1047 aa15.43■□□□□ 0.06
LINC00540-202ENST00000616974 ARP10275 920 aa15.43■□□□□ 0.06
LINC00540-202ENST00000616974 PSMC6P62333 389 aa15.43■□□□□ 0.06
LINC00540-202ENST00000616974 SP4Q02446 784 aa15.43■□□□□ 0.06
LINC00540-202ENST00000616974 TRAF1Q13077 416 aa15.43■□□□□ 0.06
LINC00540-202ENST00000616974 FOXD4L1Q9NU39 408 aa15.43■□□□□ 0.06
LINC00540-202ENST00000616974 A0A1W2PQ45 241 aaPredicted RBP15.43■□□□□ 0.06
LINC00540-202ENST00000616974 A0A1W2PQY0 241 aa15.43■□□□□ 0.06
LINC00540-202ENST00000616974 ACLYP53396 1101 aa15.43■□□□□ 0.06
LINC00540-202ENST00000616974 ARHGAP4P98171 946 aa15.43■□□□□ 0.06
LINC00540-202ENST00000616974 FSCN1Q16658 493 aaKnown RBP15.43■□□□□ 0.06
LINC00540-202ENST00000616974 CPLX2Q6PUV4 134 aaKnown RBP15.43■□□□□ 0.06
LINC00540-202ENST00000616974 OR6J1Q8NGC5 347 aa15.43■□□□□ 0.06
LINC00540-202ENST00000616974 AFG1LQ8WV93 481 aa15.43■□□□□ 0.06
LINC00540-202ENST00000616974 C11orf49Q9H6J7 331 aa15.43■□□□□ 0.06
LINC00540-202ENST00000616974 C6orf50Q9HD87 102 aa15.43■□□□□ 0.06
LINC00540-202ENST00000616974 PCDHA4Q9UN74 947 aa15.43■□□□□ 0.06
LINC00540-202ENST00000616974 CHD9Q3L8U1 2897 aa15.43■□□□□ 0.06
LINC00540-202ENST00000616974 GRIN2DO15399 1336 aa15.42■□□□□ 0.06
LINC00540-202ENST00000616974 KAT6AQ92794 2004 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms