RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 PARD3BQ8TEW8 1205 aa5.37□□□□□ -1.55
VPS13D-213ENST00000613099 RILPQ96NA2 401 aa5.37□□□□□ -1.55
VPS13D-213ENST00000613099 TCEAL9Q9UHQ7 104 aa5.37□□□□□ -1.55
VPS13D-213ENST00000613099 PIK3C2GO75747 1445 aa5.37□□□□□ -1.55
VPS13D-213ENST00000613099 HGSO14964 777 aaPredicted RBP5.36□□□□□ -1.55
VPS13D-213ENST00000613099 PCP11498 1178 aaKnown RBP5.36□□□□□ -1.55
VPS13D-213ENST00000613099 RAB14P61106 215 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 RBBP8NLQ8NC74 664 aaPredicted RBP5.36□□□□□ -1.55
VPS13D-213ENST00000613099 ZFAND2BQ8WV99 257 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 TRIM75PA6NK02 468 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 FAM25AB3EWG3 89 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 FAM25CB3EWG5 89 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 FAM25GB3EWG6 89 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 ATL2Q8NHH9 583 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 PHACTR1Q9C0D0 580 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 SYBUQ9NX95 663 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 SPG7Q9UQ90 795 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 MARCKSP29966 332 aaPredicted RBP5.36□□□□□ -1.55
VPS13D-213ENST00000613099 CACNA2D1P54289 1103 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 STX17P56962 302 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 MMRN2Q9H8L6 949 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 RABL2BQ9UNT1 228 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 ASPHQ12797 758 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 IRGCQ6NXR0 463 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 FAM133AQ8N9E0 248 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 MTMR6Q9Y217 621 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 USP19O94966 1318 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 CCT2P78371 535 aaKnown RBP5.36□□□□□ -1.55
VPS13D-213ENST00000613099 FLCNQ8NFG4 579 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 POLR3CQ9BUI4 534 aaPredicted RBP5.36□□□□□ -1.55
VPS13D-213ENST00000613099 USP15Q9Y4E8 981 aaPredicted RBP5.36□□□□□ -1.55
VPS13D-213ENST00000613099 IGF2BP3O00425 579 aaKnown RBP eCLIP5.36□□□□□ -1.55
VPS13D-213ENST00000613099 CLASP2O75122 1294 aaKnown RBP5.36□□□□□ -1.55
VPS13D-213ENST00000613099 GOLGA8RI6L899 631 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 HSPA13P48723 471 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 BYSLQ13895 437 aaKnown RBP5.36□□□□□ -1.55
VPS13D-213ENST00000613099 GSTA5Q7RTV2 222 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 EPB41L5Q9HCM4 733 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 DDX28Q9NUL7 540 aaKnown RBP5.36□□□□□ -1.55
VPS13D-213ENST00000613099 PLAAQ9Y263 795 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 KIF13AQ9H1H9 1805 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 VDRP11473 427 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 MED21Q13503 144 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 FLOT2Q14254 428 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 KRT81Q14533 505 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 CNGA3Q16281 694 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 USP37Q86T82 979 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 HORMAD1Q86X24 394 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 DZIP3Q86Y13 1208 aaKnown RBP5.36□□□□□ -1.55
VPS13D-213ENST00000613099 SAMD3Q8N6K7 520 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 HDAC6Q9UBN7 1215 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 TMA7Q9Y2S6 64 aaKnown RBP5.36□□□□□ -1.55
VPS13D-213ENST00000613099 GRAMD1BQ3KR37 738 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 CEP55Q53EZ4 464 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 TTLL11Q8NHH1 800 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 SPC25Q9HBM1 224 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 TRPC7Q9HCX4 862 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 AMOTL2Q9Y2J4 779 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 KRT15P19012 456 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 SLC5A9Q2M3M2 681 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 RBM46Q8TBY0 533 aaKnown RBP5.36□□□□□ -1.55
VPS13D-213ENST00000613099 SEL1L2Q5TEA6 688 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 KDM7AQ6ZMT4 941 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 PEX26Q7Z412 305 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 SLC35F6Q8N357 371 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 RPLP2P05387 115 aaKnown RBP5.36□□□□□ -1.55
VPS13D-213ENST00000613099 MAN1A1P33908 653 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 CEP78Q5JTW2 689 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 LRRC49Q8IUZ0 686 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 ANKRD42Q8N9B4 389 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 ATP6V1HQ9UI12 483 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 NOVA2Q9UNW9 492 aaKnown RBP5.36□□□□□ -1.55
VPS13D-213ENST00000613099 TTC21AQ8NDW8 1320 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 ATP6V1G2O95670 118 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 DSG1Q02413 1049 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 PKP1Q13835 747 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 AGBL2Q5U5Z8 902 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 COG3Q96JB2 828 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 CRNKL1Q9BZJ0 848 aaKnown RBP5.36□□□□□ -1.55
VPS13D-213ENST00000613099 ITM2BQ9Y287 266 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 EXOC6BQ9Y2D4 811 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 MYH4Q9Y623 1939 aa5.36□□□□□ -1.55
VPS13D-213ENST00000613099 A0A1B0GVL5 298 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 DEFA1P59665 94 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 DEFA3P59666 94 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 RNASE9P60153 205 aaKnown RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 COPS2P61201 443 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 MAGOHP61326 146 aaKnown RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 RNF169Q8NCN4 708 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 MAGOHBQ96A72 148 aaKnown RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 DGCR14Q96DF8 476 aaKnown RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 NEUROD6Q96NK8 337 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 MRPL40Q9NQ50 206 aaKnown RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 NLRP2Q9NX02 1062 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 FLT3P36888 993 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 ARHGAP4P98171 946 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 PPIDQ08752 370 aaKnown RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 LBRQ14739 615 aaKnown RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 R3HDM1Q15032 1099 aaKnown RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 FAAH2Q6GMR7 532 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms