RNA–Protein interactions for RNA: ENST00000607559.1

TPM2-208, Transcript of tropomyosin 2, human

TSL 2

Gene TPM2, Length 518 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM2-208	ENST00000607559	NOL8	Q76FK4	1167 aa	Known RBP	12.45	□□□□□ -0.42
TPM2-208	ENST00000607559	CATIP	Q7Z7H3	387 aa		12.45	□□□□□ -0.42
TPM2-208	ENST00000607559	VSIG10L	Q86VR7	867 aa		12.45	□□□□□ -0.42
TPM2-208	ENST00000607559	SGMS1	Q86VZ5	419 aa		12.45	□□□□□ -0.42
TPM2-208	ENST00000607559	BBX	Q8WY36	941 aa	Predicted RBP	12.45	□□□□□ -0.42
TPM2-208	ENST00000607559	EMID1	Q96A84	441 aa	Predicted RBP	12.45	□□□□□ -0.42
TPM2-208	ENST00000607559	RMDN3	Q96TC7	470 aa		12.45	□□□□□ -0.42
TPM2-208	ENST00000607559	LZTS2	Q9BRK4	669 aa		12.45	□□□□□ -0.42
TPM2-208	ENST00000607559	VAT1L	Q9HCJ6	419 aa		12.45	□□□□□ -0.42
TPM2-208	ENST00000607559	RYDEN	Q9NUL5	291 aa	Known RBP	12.45	□□□□□ -0.42
TPM2-208	ENST00000607559	PCDHA1	Q9Y5I3	950 aa		12.45	□□□□□ -0.42
TPM2-208	ENST00000607559	MCM3AP	O60318	1980 aa		12.45	□□□□□ -0.42
TPM2-208	ENST00000607559	TTC28	Q96AY4	2481 aa		12.45	□□□□□ -0.42
TPM2-208	ENST00000607559	LTBP2	Q14767	1821 aa		12.44	□□□□□ -0.42
TPM2-208	ENST00000607559	NR3C2	P08235	984 aa		12.44	□□□□□ -0.42
TPM2-208	ENST00000607559	TGFB3	P10600	412 aa		12.44	□□□□□ -0.42
TPM2-208	ENST00000607559	EPHB4	P54760	987 aa		12.44	□□□□□ -0.42
TPM2-208	ENST00000607559	SMAD3	P84022	425 aa	Known RBP	12.44	□□□□□ -0.42
TPM2-208	ENST00000607559	PTPN11	Q06124	597 aa	Predicted RBP	12.44	□□□□□ -0.42
TPM2-208	ENST00000607559	TTLL4	Q14679	1199 aa		12.44	□□□□□ -0.42
TPM2-208	ENST00000607559	PPP2R5B	Q15173	497 aa		12.44	□□□□□ -0.42
TPM2-208	ENST00000607559	C9orf50	Q5SZB4	431 aa		12.44	□□□□□ -0.42
TPM2-208	ENST00000607559	ZNF697	Q5TEC3	545 aa		12.44	□□□□□ -0.42
TPM2-208	ENST00000607559	RASIP1	Q5U651	963 aa		12.44	□□□□□ -0.42
TPM2-208	ENST00000607559	CREB3L3	Q68CJ9	461 aa		12.44	□□□□□ -0.42
TPM2-208	ENST00000607559	C16orf59	Q7L2K0	433 aa		12.44	□□□□□ -0.42
TPM2-208	ENST00000607559	TEX2	Q8IWB9	1127 aa		12.44	□□□□□ -0.42
TPM2-208	ENST00000607559	KCNB2	Q92953	911 aa		12.44	□□□□□ -0.42
TPM2-208	ENST00000607559	PXMP2	Q9NR77	195 aa		12.44	□□□□□ -0.42
TPM2-208	ENST00000607559	LRRC37A2	A6NM11	1700 aa		12.44	□□□□□ -0.42
TPM2-208	ENST00000607559	MYO9B	Q13459	2157 aa		12.44	□□□□□ -0.42
TPM2-208	ENST00000607559	UNC80	Q8N2C7	3258 aa		12.43	□□□□□ -0.42
TPM2-208	ENST00000607559	SH2B2	O14492	632 aa	Predicted RBP	12.43	□□□□□ -0.42
TPM2-208	ENST00000607559	TLR3	O15455	904 aa	Known RBP	12.43	□□□□□ -0.42
TPM2-208	ENST00000607559	PRC1	O43663	620 aa		12.43	□□□□□ -0.42
TPM2-208	ENST00000607559	GTPBP6	O43824	516 aa	Predicted RBP	12.43	□□□□□ -0.42
TPM2-208	ENST00000607559	RGS20	O76081	388 aa		12.43	□□□□□ -0.42
TPM2-208	ENST00000607559	ARIH2	O95376	493 aa		12.43	□□□□□ -0.42
TPM2-208	ENST00000607559	TXN	P10599	105 aa	Known RBP	12.43	□□□□□ -0.42
TPM2-208	ENST00000607559	HOXD8	P13378	290 aa	Predicted RBP	12.43	□□□□□ -0.42
TPM2-208	ENST00000607559	PTGS1	P23219	599 aa		12.43	□□□□□ -0.42
TPM2-208	ENST00000607559	KIF5B	P33176	963 aa		12.43	□□□□□ -0.42
TPM2-208	ENST00000607559	GNAQ	P50148	359 aa		12.43	□□□□□ -0.42
TPM2-208	ENST00000607559	EXOSC10	Q01780	885 aa	Known RBP	12.43	□□□□□ -0.42
TPM2-208	ENST00000607559	FPGS	Q05932	587 aa		12.43	□□□□□ -0.42
TPM2-208	ENST00000607559	COL9A3	Q14050	684 aa	Predicted RBP	12.43	□□□□□ -0.42
TPM2-208	ENST00000607559	BRDT	Q58F21	947 aa	Predicted RBP	12.43	□□□□□ -0.42
TPM2-208	ENST00000607559	KCNV1	Q6PIU1	500 aa		12.43	□□□□□ -0.42
TPM2-208	ENST00000607559	ZNF654	Q8IZM8	581 aa		12.43	□□□□□ -0.42
TPM2-208	ENST00000607559	VTI1A	Q96AJ9	217 aa		12.43	□□□□□ -0.42
TPM2-208	ENST00000607559	PIGS	Q96S52	555 aa		12.43	□□□□□ -0.42
TPM2-208	ENST00000607559	PDCD2L	Q9BRP1	358 aa		12.43	□□□□□ -0.42
TPM2-208	ENST00000607559	DDX41	Q9UJV9	622 aa	Known RBP	12.43	□□□□□ -0.42
TPM2-208	ENST00000607559	FRMPD4	Q14CM0	1322 aa		12.42	□□□□□ -0.42
TPM2-208	ENST00000607559	PIK3CD	O00329	1044 aa		12.42	□□□□□ -0.42
TPM2-208	ENST00000607559	DLL1	O00548	723 aa		12.42	□□□□□ -0.42
TPM2-208	ENST00000607559	DHX16	O60231	1041 aa	Known RBP	12.42	□□□□□ -0.42
TPM2-208	ENST00000607559	CFB	P00751	764 aa		12.42	□□□□□ -0.42
TPM2-208	ENST00000607559	SUPT20HL2	P0C7V6	817 aa		12.42	□□□□□ -0.42
TPM2-208	ENST00000607559	CALM1	P0DP23	149 aa		12.42	□□□□□ -0.42
TPM2-208	ENST00000607559	CALM2	P0DP24	149 aa		12.42	□□□□□ -0.42
TPM2-208	ENST00000607559	CALM3	P0DP25	149 aa		12.42	□□□□□ -0.42
TPM2-208	ENST00000607559	ARHGAP1	Q07960	439 aa		12.42	□□□□□ -0.42
TPM2-208	ENST00000607559	RNF20	Q5VTR2	975 aa		12.42	□□□□□ -0.42
TPM2-208	ENST00000607559	NFRKB	Q6P4R8	1299 aa		12.42	□□□□□ -0.42
TPM2-208	ENST00000607559	CASC1	Q6TDU7	716 aa		12.42	□□□□□ -0.42
TPM2-208	ENST00000607559	CHST3	Q7LGC8	479 aa		12.42	□□□□□ -0.42
TPM2-208	ENST00000607559	SESTD1	Q86VW0	696 aa		12.42	□□□□□ -0.42
TPM2-208	ENST00000607559	MTG1	Q9BT17	334 aa	Predicted RBP	12.42	□□□□□ -0.42
TPM2-208	ENST00000607559	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	12.42	□□□□□ -0.42
TPM2-208	ENST00000607559	TMEM265	A0A087WTH1	108 aa		12.41	□□□□□ -0.42
TPM2-208	ENST00000607559	GCOM1	H8Y6P7	765 aa	Predicted RBP	12.41	□□□□□ -0.42
TPM2-208	ENST00000607559	EPB41L2	O43491	1005 aa	Known RBP	12.41	□□□□□ -0.42
TPM2-208	ENST00000607559	STAM2	O75886	525 aa		12.41	□□□□□ -0.42
TPM2-208	ENST00000607559	GH1	P01241	217 aa		12.41	□□□□□ -0.42
TPM2-208	ENST00000607559	POLR2M	P0CAP2	368 aa		12.41	□□□□□ -0.42
TPM2-208	ENST00000607559	PPIG	Q13427	754 aa	Known RBP eCLIP	12.41	□□□□□ -0.42	4e-7	■■■□□ 18.4
TPM2-208	ENST00000607559	TMEM240	Q5SV17	173 aa		12.41	□□□□□ -0.42
TPM2-208	ENST00000607559	ARHGEF16	Q5VV41	709 aa		12.41	□□□□□ -0.42
TPM2-208	ENST00000607559	FBXL16	Q8N461	479 aa		12.41	□□□□□ -0.42
TPM2-208	ENST00000607559	TMEM199	Q8N511	208 aa		12.41	□□□□□ -0.42
TPM2-208	ENST00000607559	OR6J1	Q8NGC5	347 aa		12.41	□□□□□ -0.42
TPM2-208	ENST00000607559	NOC4L	Q9BVI4	516 aa	Known RBP	12.41	□□□□□ -0.42
TPM2-208	ENST00000607559	ANO2	Q9NQ90	1003 aa		12.41	□□□□□ -0.42
TPM2-208	ENST00000607559	GPHN	Q9NQX3	736 aa	Predicted RBP	12.41	□□□□□ -0.42
TPM2-208	ENST00000607559	B4GALT4	O60513	344 aa		12.4	□□□□□ -0.42
TPM2-208	ENST00000607559	PPFIA4	O75335	1185 aa		12.4	□□□□□ -0.42
TPM2-208	ENST00000607559	CDC45	O75419	566 aa		12.4	□□□□□ -0.42
TPM2-208	ENST00000607559	ICAM3	P32942	547 aa		12.4	□□□□□ -0.42
TPM2-208	ENST00000607559	RCAN1	P53805	252 aa		12.4	□□□□□ -0.42
TPM2-208	ENST00000607559	LAMC2	Q13753	1193 aa		12.4	□□□□□ -0.42
TPM2-208	ENST00000607559	PGM5	Q15124	567 aa		12.4	□□□□□ -0.42
TPM2-208	ENST00000607559	NBPF20	Q3BBV1	942 aa		12.4	□□□□□ -0.42
TPM2-208	ENST00000607559	XRRA1	Q6P2D8	792 aa		12.4	□□□□□ -0.42
TPM2-208	ENST00000607559	SRBD1	Q8N5C6	995 aa	Known RBP	12.4	□□□□□ -0.42
TPM2-208	ENST00000607559	FANCB	Q8NB91	859 aa		12.4	□□□□□ -0.42
TPM2-208	ENST00000607559	CTCFL	Q8NI51	663 aa	Predicted RBP	12.4	□□□□□ -0.42
TPM2-208	ENST00000607559	COPS5	Q92905	334 aa		12.4	□□□□□ -0.42
TPM2-208	ENST00000607559	VWCE	Q96DN2	955 aa		12.4	□□□□□ -0.42
TPM2-208	ENST00000607559	RNPC3	Q96LT9	517 aa	Known RBP	12.4	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms