RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 KLF18A0A0U1RQI7 1052 aa10.15□□□□□ -0.78
TRIM28-214ENST00000600840 ERICH2A1L162 156 aa10.15□□□□□ -0.78
TRIM28-214ENST00000600840 MOXD2PA6NHM9 499 aa10.15□□□□□ -0.78
TRIM28-214ENST00000600840 DCDC2CA8MYV0 355 aa10.15□□□□□ -0.78
TRIM28-214ENST00000600840 RBAK-RBAKDNI3L0D1 243 aa10.15□□□□□ -0.78
TRIM28-214ENST00000600840 CYTH3O43739 400 aa10.15□□□□□ -0.78
TRIM28-214ENST00000600840 DDAH1O94760 285 aa10.15□□□□□ -0.78
TRIM28-214ENST00000600840 ADD1P35611 737 aaKnown RBP10.15□□□□□ -0.78
TRIM28-214ENST00000600840 NKX3-2P78367 333 aa10.15□□□□□ -0.78
TRIM28-214ENST00000600840 TNFAIP2Q03169 654 aa10.15□□□□□ -0.78
TRIM28-214ENST00000600840 SKIV2LQ15477 1246 aaKnown RBP10.15□□□□□ -0.78
TRIM28-214ENST00000600840 MFSD5Q6N075 450 aa10.15□□□□□ -0.78
TRIM28-214ENST00000600840 CXCL17Q6UXB2 119 aa10.15□□□□□ -0.78
TRIM28-214ENST00000600840 SLC30A10Q6XR72 485 aa10.15□□□□□ -0.78
TRIM28-214ENST00000600840 MORC4Q8TE76 937 aa10.15□□□□□ -0.78
TRIM28-214ENST00000600840 TBC1D5Q92609 795 aa10.15□□□□□ -0.78
TRIM28-214ENST00000600840 SNX21Q969T3 373 aa10.15□□□□□ -0.78
TRIM28-214ENST00000600840 MTMR8Q96EF0 704 aa10.15□□□□□ -0.78
TRIM28-214ENST00000600840 TOX2Q96NM4 488 aa10.15□□□□□ -0.78
TRIM28-214ENST00000600840 UBA5Q9GZZ9 404 aa10.15□□□□□ -0.78
TRIM28-214ENST00000600840 CCDC69A6NI79 296 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 ASB14A6NK59 587 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 ARVCFO00192 962 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 RFXAPO00287 272 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 DYNC1LI2O43237 492 aaPredicted RBP10.14□□□□□ -0.79
TRIM28-214ENST00000600840 PFKFB2O60825 505 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 CTDNEP1O95476 244 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 MYOGP15173 224 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 RXRAP19793 462 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 SMARCA1P28370 1054 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 RABGGTBP53611 331 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 PSMC6P62333 389 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 SCRN1Q12765 414 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 PPIGQ13427 754 aaKnown RBP eCLIP10.14□□□□□ -0.795e-8■■□□□ 12.3
TRIM28-214ENST00000600840 ANKRD1Q15327 319 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 CATIPQ7Z7H3 387 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 RAB11FIP4Q86YS3 637 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 FAM126BQ8IXS8 530 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 SRBD1Q8N5C6 995 aaKnown RBP10.14□□□□□ -0.79
TRIM28-214ENST00000600840 PPP1R13LQ8WUF5 828 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 NUP133Q8WUM0 1156 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 VTI1AQ96AJ9 217 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 RIOX1Q9H6W3 641 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 SLC28A3Q9HAS3 691 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 MSRAQ9UJ68 235 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 LIMCH1Q9UPQ0 1083 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 SLC12A7Q9Y666 1083 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 NCOR1O75376 2440 aa10.14□□□□□ -0.79
TRIM28-214ENST00000600840 ELP1O95163 1332 aa10.13□□□□□ -0.79
TRIM28-214ENST00000600840 UMODL1Q5DID0 1318 aa10.13□□□□□ -0.79
TRIM28-214ENST00000600840 PTPDC1A2A3K4 754 aa10.13□□□□□ -0.79
TRIM28-214ENST00000600840 KLRF2D3W0D1 207 aa10.13□□□□□ -0.79
TRIM28-214ENST00000600840 ZBTB43O43298 467 aa10.13□□□□□ -0.79
TRIM28-214ENST00000600840 CD4P01730 458 aa10.13□□□□□ -0.79
TRIM28-214ENST00000600840 CALM1P0DP23 149 aa10.13□□□□□ -0.79
TRIM28-214ENST00000600840 CALM2P0DP24 149 aa10.13□□□□□ -0.79
TRIM28-214ENST00000600840 CALM3P0DP25 149 aa10.13□□□□□ -0.79
TRIM28-214ENST00000600840 CALML3P27482 149 aa10.13□□□□□ -0.79
TRIM28-214ENST00000600840 ALDH5A1P51649 535 aaPredicted RBP10.13□□□□□ -0.79
TRIM28-214ENST00000600840 PPP2R5BQ15173 497 aa10.13□□□□□ -0.79
TRIM28-214ENST00000600840 RAB30Q15771 203 aa10.13□□□□□ -0.79
TRIM28-214ENST00000600840 GPATCH4Q5T3I0 446 aaKnown RBP10.13□□□□□ -0.79
TRIM28-214ENST00000600840 KRT40Q6A162 431 aa10.13□□□□□ -0.79
TRIM28-214ENST00000600840 TMTC3Q6ZXV5 915 aa10.13□□□□□ -0.79
TRIM28-214ENST00000600840 NOL8Q76FK4 1167 aaKnown RBP10.13□□□□□ -0.79
TRIM28-214ENST00000600840 TLK2Q86UE8 772 aa10.13□□□□□ -0.79
TRIM28-214ENST00000600840 SLC43A3Q8NBI5 491 aa10.13□□□□□ -0.79
TRIM28-214ENST00000600840 PCSK9Q8NBP7 692 aaKnown RBP10.13□□□□□ -0.79
TRIM28-214ENST00000600840 SNX27Q96L92 541 aa10.13□□□□□ -0.79
TRIM28-214ENST00000600840 GLT1D1Q96MS3 346 aa10.13□□□□□ -0.79
TRIM28-214ENST00000600840 TSPYL2Q9H2G4 693 aaPredicted RBP10.13□□□□□ -0.79
TRIM28-214ENST00000600840 MYH6P13533 1939 aa10.12□□□□□ -0.79
TRIM28-214ENST00000600840 A0A0U1RQG5 324 aaPredicted RBP10.12□□□□□ -0.79
TRIM28-214ENST00000600840 PLEKHA8P1O95397 391 aa10.12□□□□□ -0.79
TRIM28-214ENST00000600840 CYP2C18P33260 490 aa10.12□□□□□ -0.79
TRIM28-214ENST00000600840 RPS6P62753 249 aaKnown RBP10.12□□□□□ -0.79
TRIM28-214ENST00000600840 CUL4AQ13619 759 aa10.12□□□□□ -0.79
TRIM28-214ENST00000600840 FSCN1Q16658 493 aaKnown RBP10.12□□□□□ -0.79
TRIM28-214ENST00000600840 ASPRV1Q53RT3 343 aa10.12□□□□□ -0.79
TRIM28-214ENST00000600840 IQSEC1Q6DN90 963 aa10.12□□□□□ -0.79
TRIM28-214ENST00000600840 NFXL1Q6ZNB6 911 aa10.12□□□□□ -0.79
TRIM28-214ENST00000600840 COPS5Q92905 334 aa10.12□□□□□ -0.79
TRIM28-214ENST00000600840 VWCEQ96DN2 955 aa10.12□□□□□ -0.79
TRIM28-214ENST00000600840 TMX3Q96JJ7 454 aa10.12□□□□□ -0.79
TRIM28-214ENST00000600840 ZSCAN31Q96LW9 406 aaPredicted RBP10.12□□□□□ -0.79
TRIM28-214ENST00000600840 SPZ1Q9BXG8 430 aa10.12□□□□□ -0.79
TRIM28-214ENST00000600840 JMJD4Q9H9V9 463 aa10.12□□□□□ -0.79
TRIM28-214ENST00000600840 SPC25Q9HBM1 224 aa10.12□□□□□ -0.79
TRIM28-214ENST00000600840 NCOA5Q9HCD5 579 aaKnown RBP10.12□□□□□ -0.79
TRIM28-214ENST00000600840 CD320Q9NPF0 282 aa10.12□□□□□ -0.79
TRIM28-214ENST00000600840 COL20A1Q9P218 1284 aa10.12□□□□□ -0.79
TRIM28-214ENST00000600840 RBM47A0AV96 593 aaKnown RBP10.11□□□□□ -0.79
TRIM28-214ENST00000600840 GOLGA8BA8MQT2 603 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 TLL1O43897 1013 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 ST18O60284 1047 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 GPR37L1O60883 481 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 ARIH2O95376 493 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 PARP1P09874 1014 aaKnown RBP10.11□□□□□ -0.79
TRIM28-214ENST00000600840 FDPSP14324 419 aaKnown RBP10.11□□□□□ -0.79
TRIM28-214ENST00000600840 IFNAR1P17181 557 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms