RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 B4DLN1 442 aa20.84■□□□□ 0.93
LIG1-216ENST00000598938 GNA11P29992 359 aa20.84■□□□□ 0.93
LIG1-216ENST00000598938 HMGN5P82970 282 aaKnown RBP20.84■□□□□ 0.93
LIG1-216ENST00000598938 PRAMEF19Q5SWL8 479 aa20.84■□□□□ 0.93
LIG1-216ENST00000598938 ARHGEF16Q5VV41 709 aa20.84■□□□□ 0.93
LIG1-216ENST00000598938 MPHOSPH6Q99547 160 aaKnown RBP20.84■□□□□ 0.93
LIG1-216ENST00000598938 PDCD2LQ9BRP1 358 aa20.84■□□□□ 0.93
LIG1-216ENST00000598938 CNPY2Q9Y2B0 182 aa20.84■□□□□ 0.93
LIG1-216ENST00000598938 ADAMTS3O15072 1205 aa20.83■□□□□ 0.93
LIG1-216ENST00000598938 ZNF865P0CJ78 1059 aaPredicted RBP20.83■□□□□ 0.93
LIG1-216ENST00000598938 EIF2AK2P19525 551 aaKnown RBP20.83■□□□□ 0.93
LIG1-216ENST00000598938 CCND3P30281 292 aaPredicted RBP20.83■□□□□ 0.93
LIG1-216ENST00000598938 NLRP5P59047 1200 aa20.83■□□□□ 0.93
LIG1-216ENST00000598938 CUL4AQ13619 759 aa20.83■□□□□ 0.93
LIG1-216ENST00000598938 BICD2Q8TD16 824 aa20.83■□□□□ 0.93
LIG1-216ENST00000598938 PHF20Q9BVI0 1012 aa20.83■□□□□ 0.93
LIG1-216ENST00000598938 ABHD16BQ9H3Z7 469 aa20.83■□□□□ 0.93
LIG1-216ENST00000598938 K7ELQ4 463 aaPredicted RBP20.82■□□□□ 0.92
LIG1-216ENST00000598938 MSCO60682 206 aa20.82■□□□□ 0.92
LIG1-216ENST00000598938 FOSP01100 380 aaPredicted RBP20.82■□□□□ 0.92
LIG1-216ENST00000598938 NR3C2P08235 984 aa20.82■□□□□ 0.92
LIG1-216ENST00000598938 XBP1P17861 261 aa20.82■□□□□ 0.92
LIG1-216ENST00000598938 PDE4DQ08499 809 aa20.82■□□□□ 0.92
LIG1-216ENST00000598938 AP3B2Q13367 1082 aa20.82■□□□□ 0.92
LIG1-216ENST00000598938 ACVR2BQ13705 512 aa20.82■□□□□ 0.92
LIG1-216ENST00000598938 PGM5Q15124 567 aa20.82■□□□□ 0.92
LIG1-216ENST00000598938 NPY5RQ15761 445 aa20.82■□□□□ 0.92
LIG1-216ENST00000598938 LRRC26Q2I0M4 334 aa20.82■□□□□ 0.92
LIG1-216ENST00000598938 MCTP2Q6DN12 878 aa20.82■□□□□ 0.92
LIG1-216ENST00000598938 DAGLBQ8NCG7 672 aa20.82■□□□□ 0.92
LIG1-216ENST00000598938 GJB4Q9NTQ9 266 aa20.82■□□□□ 0.92
LIG1-216ENST00000598938 PCDHA6Q9UN73 950 aa20.82■□□□□ 0.92
LIG1-216ENST00000598938 PCDHA8Q9Y5H6 950 aa20.82■□□□□ 0.92
LIG1-216ENST00000598938 MCM3APO60318 1980 aa20.81■□□□□ 0.92
LIG1-216ENST00000598938 LTBP2Q14767 1821 aa20.81■□□□□ 0.92
LIG1-216ENST00000598938 SPDYE3A6NKU9 549 aa20.81■□□□□ 0.92
LIG1-216ENST00000598938 GALNT17Q6IS24 598 aa20.81■□□□□ 0.92
LIG1-216ENST00000598938 REXO1Q8N1G1 1221 aaKnown RBP20.81■□□□□ 0.92
LIG1-216ENST00000598938 IL31RAQ8NI17 732 aa20.81■□□□□ 0.92
LIG1-216ENST00000598938 VTA1Q9NP79 307 aa20.81■□□□□ 0.92
LIG1-216ENST00000598938 TMEM260Q9NX78 707 aa20.81■□□□□ 0.92
LIG1-216ENST00000598938 PCDHA4Q9UN74 947 aa20.81■□□□□ 0.92
LIG1-216ENST00000598938 KCNJ14Q9UNX9 436 aa20.81■□□□□ 0.92
LIG1-216ENST00000598938 SEPT4O43236 478 aa20.8■□□□□ 0.92
LIG1-216ENST00000598938 STXBP2Q15833 593 aa20.8■□□□□ 0.92
LIG1-216ENST00000598938 TAPT1Q6NXT6 567 aa20.8■□□□□ 0.92
LIG1-216ENST00000598938 VSIG10LQ86VR7 867 aa20.8■□□□□ 0.92
LIG1-216ENST00000598938 FBXO16Q8IX29 292 aaPredicted RBP20.8■□□□□ 0.92
LIG1-216ENST00000598938 ZHX1Q9UKY1 873 aaPredicted RBP20.8■□□□□ 0.92
LIG1-216ENST00000598938 DNAH12Q6ZR08 3092 aa20.79■□□□□ 0.92
LIG1-216ENST00000598938 M0R2N6 131 aa20.79■□□□□ 0.92
LIG1-216ENST00000598938 CCND2P30279 289 aa20.79■□□□□ 0.92
LIG1-216ENST00000598938 JAKMIP3Q5VZ66 844 aa20.79■□□□□ 0.92
LIG1-216ENST00000598938 XRRA1Q6P2D8 792 aa20.79■□□□□ 0.92
LIG1-216ENST00000598938 EEPD1Q7L9B9 569 aa20.79■□□□□ 0.92
LIG1-216ENST00000598938 BLIDQ8IZY5 108 aa20.79■□□□□ 0.92
LIG1-216ENST00000598938 ANO3Q9BYT9 981 aa20.79■□□□□ 0.92
LIG1-216ENST00000598938 EHMT1Q9H9B1 1298 aa20.79■□□□□ 0.92
LIG1-216ENST00000598938 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.79■□□□□ 0.92
LIG1-216ENST00000598938 RBM47A0AV96 593 aaKnown RBP20.78■□□□□ 0.92
LIG1-216ENST00000598938 EIF3JO75822 258 aaKnown RBP20.78■□□□□ 0.92
LIG1-216ENST00000598938 CNGA1P29973 690 aa20.78■□□□□ 0.92
LIG1-216ENST00000598938 MDM2Q00987 491 aaPredicted RBP20.78■□□□□ 0.92
LIG1-216ENST00000598938 PCNX4Q63HM2 1172 aa20.78■□□□□ 0.92
LIG1-216ENST00000598938 HSCBQ8IWL3 235 aa20.78■□□□□ 0.92
LIG1-216ENST00000598938 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.78■□□□□ 0.92
LIG1-216ENST00000598938 FAM184AQ8NB25 1140 aa20.78■□□□□ 0.92
LIG1-216ENST00000598938 RASGRP4Q8TDF6 673 aa20.78■□□□□ 0.92
LIG1-216ENST00000598938 PGBD1Q96JS3 809 aa20.78■□□□□ 0.92
LIG1-216ENST00000598938 LBHD1Q9BQE6 289 aaPredicted RBP20.78■□□□□ 0.92
LIG1-216ENST00000598938 DDX20Q9UHI6 824 aaKnown RBP20.78■□□□□ 0.92
LIG1-216ENST00000598938 FAM184BQ9ULE4 1060 aa20.78■□□□□ 0.92
LIG1-216ENST00000598938 MYCLP12524 364 aaPredicted RBP20.77■□□□□ 0.92
LIG1-216ENST00000598938 AKR1A1P14550 325 aa20.77■□□□□ 0.92
LIG1-216ENST00000598938 SREBF1P36956 1147 aa20.77■□□□□ 0.92
LIG1-216ENST00000598938 MRPS9P82933 396 aaKnown RBP20.77■□□□□ 0.92
LIG1-216ENST00000598938 TRIM29Q14134 588 aa20.77■□□□□ 0.92
LIG1-216ENST00000598938 CCDC144BQ3MJ40 725 aa20.77■□□□□ 0.92
LIG1-216ENST00000598938 KRT40Q6A162 431 aa20.77■□□□□ 0.92
LIG1-216ENST00000598938 PDGFCQ9NRA1 345 aa20.77■□□□□ 0.92
LIG1-216ENST00000598938 KIF3AQ9Y496 699 aa20.77■□□□□ 0.92
LIG1-216ENST00000598938 LAMA2P24043 3122 aaKnown RBP20.76■□□□□ 0.91
LIG1-216ENST00000598938 DNM1LO00429 736 aa20.76■□□□□ 0.91
LIG1-216ENST00000598938 STAM2O75886 525 aa20.76■□□□□ 0.91
LIG1-216ENST00000598938 MMP1P03956 469 aa20.76■□□□□ 0.91
LIG1-216ENST00000598938 GJB2P29033 226 aa20.76■□□□□ 0.91
LIG1-216ENST00000598938 FOSBP53539 338 aa20.76■□□□□ 0.91
LIG1-216ENST00000598938 IQSEC1Q6DN90 963 aa20.76■□□□□ 0.91
LIG1-216ENST00000598938 CRYGNQ8WXF5 182 aa20.76■□□□□ 0.91
LIG1-216ENST00000598938 INTS4Q96HW7 963 aaKnown RBP20.76■□□□□ 0.91
LIG1-216ENST00000598938 C8orf76Q96K31 380 aa20.76■□□□□ 0.91
LIG1-216ENST00000598938 COL25A1Q9BXS0 654 aaPredicted RBP20.76■□□□□ 0.91
LIG1-216ENST00000598938 SMC3Q9UQE7 1217 aa20.76■□□□□ 0.91
LIG1-216ENST00000598938 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.75■□□□□ 0.91
LIG1-216ENST00000598938 ADCY6O43306 1168 aa20.75■□□□□ 0.91
LIG1-216ENST00000598938 RGS20O76081 388 aa20.75■□□□□ 0.91
LIG1-216ENST00000598938 ADCYAP1R1P41586 468 aa20.75■□□□□ 0.91
LIG1-216ENST00000598938 FBXO18Q8NFZ0 1043 aa20.75■□□□□ 0.91
LIG1-216ENST00000598938 OXER1Q8TDS5 423 aa20.75■□□□□ 0.91
LIG1-216ENST00000598938 SCFD2Q8WU76 684 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms