RNA–Protein interactions for RNA: ENST00000595874.1

SHKBP1-210, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 203 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-210ENST00000595874 ARHGAP1Q07960 439 aa11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 PPIGQ13427 754 aaKnown RBP eCLIP11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 PGM5Q15124 567 aa11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 UBE2SQ16763 222 aa11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 USP17L6PQ6QN14 398 aa11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 SLC43A3Q8NBI5 491 aa11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 SLC17A8Q8NDX2 589 aa11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 RGS22Q8NE09 1264 aa11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 PDCD2LQ9BRP1 358 aa11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 NOC4LQ9BVI4 516 aaKnown RBP11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 TTYH1Q9H313 450 aaPredicted RBP11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 PKD2L1Q9P0L9 805 aa11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 Q9Y3F1 56 aa11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 TELO2Q9Y4R8 837 aa11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 PPFIA3O75145 1194 aa11.92□□□□□ -0.5
SHKBP1-210ENST00000595874 RGS20O76081 388 aa11.92□□□□□ -0.5
SHKBP1-210ENST00000595874 RABGGTBP53611 331 aa11.92□□□□□ -0.5
SHKBP1-210ENST00000595874 ZNF200P98182 395 aaPredicted RBP11.92□□□□□ -0.5
SHKBP1-210ENST00000595874 NECTIN1Q15223 517 aa11.92□□□□□ -0.5
SHKBP1-210ENST00000595874 BRDTQ58F21 947 aaPredicted RBP11.92□□□□□ -0.5
SHKBP1-210ENST00000595874 BMP2KLQ5H9B9 411 aa11.92□□□□□ -0.5
SHKBP1-210ENST00000595874 CCDC62Q6P9F0 684 aa11.92□□□□□ -0.5
SHKBP1-210ENST00000595874 DHX37Q8IY37 1157 aaKnown RBP11.92□□□□□ -0.5
SHKBP1-210ENST00000595874 RASEFQ8IZ41 740 aa11.92□□□□□ -0.5
SHKBP1-210ENST00000595874 SMARCC2Q8TAQ2 1214 aa11.92□□□□□ -0.5
SHKBP1-210ENST00000595874 RRP36Q96EU6 259 aaKnown RBP11.92□□□□□ -0.5
SHKBP1-210ENST00000595874 CXXC1Q9P0U4 656 aaPredicted RBP11.92□□□□□ -0.5
SHKBP1-210ENST00000595874 DDX41Q9UJV9 622 aaKnown RBP11.92□□□□□ -0.5
SHKBP1-210ENST00000595874 NOD1Q9Y239 953 aa11.92□□□□□ -0.5
SHKBP1-210ENST00000595874 SZT2Q5T011 3432 aa11.91□□□□□ -0.5
SHKBP1-210ENST00000595874 NKRFO15226 690 aaKnown RBP eCLIP11.91□□□□□ -0.5
SHKBP1-210ENST00000595874 DDAH1O94760 285 aa11.91□□□□□ -0.5
SHKBP1-210ENST00000595874 GGPS1O95749 300 aa11.91□□□□□ -0.5
SHKBP1-210ENST00000595874 CCND2P30279 289 aa11.91□□□□□ -0.5
SHKBP1-210ENST00000595874 NT5C2P49902 561 aa11.91□□□□□ -0.5
SHKBP1-210ENST00000595874 SP2Q02086 613 aa11.91□□□□□ -0.5
SHKBP1-210ENST00000595874 GDF6Q6KF10 455 aaPredicted RBP11.91□□□□□ -0.5
SHKBP1-210ENST00000595874 PPM1EQ8WY54 764 aa11.91□□□□□ -0.5
SHKBP1-210ENST00000595874 PGBD1Q96JS3 809 aa11.91□□□□□ -0.5
SHKBP1-210ENST00000595874 NEK1Q96PY6 1258 aa11.91□□□□□ -0.5
SHKBP1-210ENST00000595874 IWS1Q96ST2 819 aa11.91□□□□□ -0.5
SHKBP1-210ENST00000595874 CDX2Q99626 313 aaPredicted RBP11.91□□□□□ -0.5
SHKBP1-210ENST00000595874 SEMA6BQ9H3T3 888 aa11.91□□□□□ -0.5
SHKBP1-210ENST00000595874 IL23AQ9NPF7 189 aa11.91□□□□□ -0.5
SHKBP1-210ENST00000595874 SEC63Q9UGP8 760 aaKnown RBP11.91□□□□□ -0.5
SHKBP1-210ENST00000595874 BRPF3Q9ULD4 1205 aa11.91□□□□□ -0.5
SHKBP1-210ENST00000595874 SLC12A7Q9Y666 1083 aa11.91□□□□□ -0.5
SHKBP1-210ENST00000595874 GBF1Q92538 1859 aa11.91□□□□□ -0.5
SHKBP1-210ENST00000595874 A6NJR5 290 aa11.9□□□□□ -0.5
SHKBP1-210ENST00000595874 EIF3JO75822 258 aaKnown RBP11.9□□□□□ -0.5
SHKBP1-210ENST00000595874 FGBP02675 491 aa11.9□□□□□ -0.5
SHKBP1-210ENST00000595874 MYOGP15173 224 aa11.9□□□□□ -0.5
SHKBP1-210ENST00000595874 KIF5BP33176 963 aa11.9□□□□□ -0.5
SHKBP1-210ENST00000595874 PSEN2P49810 448 aa11.9□□□□□ -0.5
SHKBP1-210ENST00000595874 UTP14CQ5TAP6 766 aaKnown RBP11.9□□□□□ -0.5
SHKBP1-210ENST00000595874 HEATR3Q7Z4Q2 680 aa11.9□□□□□ -0.5
SHKBP1-210ENST00000595874 KAT2BQ92831 832 aa11.9□□□□□ -0.5
SHKBP1-210ENST00000595874 TMEM87BQ96K49 555 aa11.9□□□□□ -0.5
SHKBP1-210ENST00000595874 SPATA33Q96N06 139 aa11.9□□□□□ -0.5
SHKBP1-210ENST00000595874 UIMC1Q96RL1 719 aa11.9□□□□□ -0.5
SHKBP1-210ENST00000595874 FTOQ9C0B1 505 aaKnown RBP eCLIP11.9□□□□□ -0.5
SHKBP1-210ENST00000595874 NKX2-4Q9H2Z4 354 aa11.9□□□□□ -0.5
SHKBP1-210ENST00000595874 HDAC6Q9UBN7 1215 aa11.9□□□□□ -0.5
SHKBP1-210ENST00000595874 RANBP2P49792 3224 aaKnown RBP11.9□□□□□ -0.51
SHKBP1-210ENST00000595874 LOC102724159A0A0B4J2E5 919 aa11.89□□□□□ -0.51
SHKBP1-210ENST00000595874 KLF18A0A0U1RQI7 1052 aa11.89□□□□□ -0.51
SHKBP1-210ENST00000595874 UBA1P22314 1058 aaKnown RBP11.89□□□□□ -0.51
SHKBP1-210ENST00000595874 DNAJB2P25686 324 aa11.89□□□□□ -0.51
SHKBP1-210ENST00000595874 MRPS9P82933 396 aaKnown RBP11.89□□□□□ -0.51
SHKBP1-210ENST00000595874 MFSD10Q14728 455 aa11.89□□□□□ -0.51
SHKBP1-210ENST00000595874 PWP2Q15269 919 aaKnown RBP11.89□□□□□ -0.51
SHKBP1-210ENST00000595874 PTGISQ16647 500 aa11.89□□□□□ -0.51
SHKBP1-210ENST00000595874 HSDL1Q3SXM5 330 aa11.89□□□□□ -0.51
SHKBP1-210ENST00000595874 TMCO2Q7Z6W1 182 aaPredicted RBP11.89□□□□□ -0.51
SHKBP1-210ENST00000595874 CUL5Q93034 780 aa11.89□□□□□ -0.51
SHKBP1-210ENST00000595874 PBX4Q9BYU1 374 aa11.89□□□□□ -0.51
SHKBP1-210ENST00000595874 MLXIPQ9HAP2 919 aa11.89□□□□□ -0.51
SHKBP1-210ENST00000595874 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 GOLGA8AA7E2F4 631 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 GOLGA8BA8MQT2 603 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 DTNBO60941 627 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 NEFLP07196 543 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 CASTP20810 708 aaKnown RBP11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 SMAD3P84022 425 aaKnown RBP11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 FGD1P98174 961 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 APOBRQ0VD83 1088 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 SEMA3FQ13275 785 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 HIC1Q14526 733 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 GRIN2CQ14957 1233 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 DGKDQ16760 1214 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 KIAA0753Q2KHM9 967 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 RNF20Q5VTR2 975 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 PSRC1Q6PGN9 363 aaPredicted RBP11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 SYNE3Q6ZMZ3 975 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 TMTC3Q6ZXV5 915 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 CYFIP1Q7L576 1253 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 VSIG10LQ86VR7 867 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 TRIM50Q86XT4 487 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 FANCBQ8NB91 859 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms