RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 CHST13Q8NET6 341 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 ENGASEQ8NFI3 743 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 MMP19Q99542 508 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 GZF1Q9H116 711 aaPredicted RBP11.91□□□□□ -0.5
VPS4B-204ENST00000589604 ACAD9Q9H845 621 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 FLRT1Q9NZU1 646 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 COL20A1Q9P218 1284 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 FBXO2Q9UK22 296 aaPredicted RBP11.91□□□□□ -0.5
VPS4B-204ENST00000589604 PLXNA1Q9UIW2 1896 aa11.9□□□□□ -0.5
VPS4B-204ENST00000589604 SLC15A5A6NIM6 579 aa11.9□□□□□ -0.5
VPS4B-204ENST00000589604 ME1P48163 572 aa11.9□□□□□ -0.5
VPS4B-204ENST00000589604 GRIN1Q05586 938 aa11.9□□□□□ -0.5
VPS4B-204ENST00000589604 ZNF174Q15697 407 aa11.9□□□□□ -0.5
VPS4B-204ENST00000589604 UBE2SQ16763 222 aa11.9□□□□□ -0.5
VPS4B-204ENST00000589604 INF2Q27J81 1249 aa11.9□□□□□ -0.5
VPS4B-204ENST00000589604 TKFCQ3LXA3 575 aa11.9□□□□□ -0.5
VPS4B-204ENST00000589604 JAKMIP3Q5VZ66 844 aa11.9□□□□□ -0.5
VPS4B-204ENST00000589604 CTU1Q7Z7A3 348 aaKnown RBP11.9□□□□□ -0.5
VPS4B-204ENST00000589604 CCAR1Q8IX12 1150 aaKnown RBP11.9□□□□□ -0.5
VPS4B-204ENST00000589604 REXO1Q8N1G1 1221 aaKnown RBP11.9□□□□□ -0.5
VPS4B-204ENST00000589604 BICD2Q8TD16 824 aa11.9□□□□□ -0.5
VPS4B-204ENST00000589604 CLIC6Q96NY7 704 aa11.9□□□□□ -0.5
VPS4B-204ENST00000589604 PSTPIP2Q9H939 334 aa11.9□□□□□ -0.5
VPS4B-204ENST00000589604 CYP39A1Q9NYL5 469 aa11.9□□□□□ -0.5
VPS4B-204ENST00000589604 NOL7Q9UMY1 257 aaKnown RBP11.9□□□□□ -0.5
VPS4B-204ENST00000589604 PTPN22Q9Y2R2 807 aa11.9□□□□□ -0.5
VPS4B-204ENST00000589604 PTCH2Q9Y6C5 1203 aa11.9□□□□□ -0.5
VPS4B-204ENST00000589604 ABCB11O95342 1321 aa11.9□□□□□ -0.51
VPS4B-204ENST00000589604 CCDC194A0A1B0GVG4 234 aa11.89□□□□□ -0.51
VPS4B-204ENST00000589604 SOWAHBA6NEL2 793 aa11.89□□□□□ -0.51
VPS4B-204ENST00000589604 IGHA2P01877 340 aa11.89□□□□□ -0.51
VPS4B-204ENST00000589604 FCER1AP12319 257 aa11.89□□□□□ -0.51
VPS4B-204ENST00000589604 CYP2B6P20813 491 aa11.89□□□□□ -0.51
VPS4B-204ENST00000589604 MAP2K5Q13163 448 aa11.89□□□□□ -0.51
VPS4B-204ENST00000589604 SNW1Q13573 536 aaKnown RBP11.89□□□□□ -0.51
VPS4B-204ENST00000589604 BAATQ14032 418 aaPredicted RBP11.89□□□□□ -0.51
VPS4B-204ENST00000589604 NONOQ15233 471 aaKnown RBP eCLIP11.89□□□□□ -0.51
VPS4B-204ENST00000589604 ZNF792Q3KQV3 632 aa11.89□□□□□ -0.51
VPS4B-204ENST00000589604 USP17L6PQ6QN14 398 aa11.89□□□□□ -0.51
VPS4B-204ENST00000589604 NSMFQ6X4W1 530 aa11.89□□□□□ -0.51
VPS4B-204ENST00000589604 CUL5Q93034 780 aa11.89□□□□□ -0.51
VPS4B-204ENST00000589604 SRPRBQ9Y5M8 271 aaKnown RBP11.89□□□□□ -0.51
VPS4B-204ENST00000589604 STK24Q9Y6E0 443 aa11.89□□□□□ -0.51
VPS4B-204ENST00000589604 FAM237AA0A1B0GTK4 181 aa11.88□□□□□ -0.51
VPS4B-204ENST00000589604 STRNO43815 780 aa11.88□□□□□ -0.51
VPS4B-204ENST00000589604 CUTAO60888 179 aa11.88□□□□□ -0.51
VPS4B-204ENST00000589604 NR1I2O75469 434 aa11.88□□□□□ -0.51
VPS4B-204ENST00000589604 HOXC6P09630 235 aa11.88□□□□□ -0.51
VPS4B-204ENST00000589604 ELNP15502 786 aa11.88□□□□□ -0.51
VPS4B-204ENST00000589604 CMA1P23946 247 aa11.88□□□□□ -0.51
VPS4B-204ENST00000589604 HOXA13P31271 388 aaPredicted RBP11.88□□□□□ -0.51
VPS4B-204ENST00000589604 COPB2P35606 906 aa11.88□□□□□ -0.51
VPS4B-204ENST00000589604 MRPL12P52815 198 aaKnown RBP11.88□□□□□ -0.51
VPS4B-204ENST00000589604 RPS6P62753 249 aaKnown RBP11.88□□□□□ -0.51
VPS4B-204ENST00000589604 ATP2C1P98194 919 aaPredicted RBP11.88□□□□□ -0.51
VPS4B-204ENST00000589604 TRIM32Q13049 653 aa11.88□□□□□ -0.51
VPS4B-204ENST00000589604 KCTD2Q14681 263 aa11.88□□□□□ -0.51
VPS4B-204ENST00000589604 IL17AQ16552 155 aa11.88□□□□□ -0.51
VPS4B-204ENST00000589604 ZSCAN23Q3MJ62 389 aa11.88□□□□□ -0.51
VPS4B-204ENST00000589604 SHC4Q6S5L8 630 aa11.88□□□□□ -0.51
VPS4B-204ENST00000589604 ABRAQ8N0Z2 381 aa11.88□□□□□ -0.51
VPS4B-204ENST00000589604 ANKRD35Q8N283 1001 aa11.88□□□□□ -0.51
VPS4B-204ENST00000589604 FAM133AQ8N9E0 248 aa11.88□□□□□ -0.51
VPS4B-204ENST00000589604 TBCKQ8TEA7 893 aa11.88□□□□□ -0.51
VPS4B-204ENST00000589604 NUDT12Q9BQG2 462 aa11.88□□□□□ -0.51
VPS4B-204ENST00000589604 FBXO40Q9UH90 709 aa11.88□□□□□ -0.51
VPS4B-204ENST00000589604 IVNS1ABPQ9Y6Y0 642 aa11.88□□□□□ -0.51
VPS4B-204ENST00000589604 GOLGA6L4A6NEF3 574 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 GNRH1P01148 92 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 HSD17B4P51659 736 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 GHRHRQ02643 423 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 PTGDRQ13258 359 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 RESP18Q5W5W9 173 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 FMR1NBQ8N0W7 255 aaPredicted RBP11.87□□□□□ -0.51
VPS4B-204ENST00000589604 KRI1Q8N9T8 703 aaKnown RBP11.87□□□□□ -0.51
VPS4B-204ENST00000589604 FSIP1Q8NA03 581 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 SYTL5Q8TDW5 730 aaPredicted RBP11.87□□□□□ -0.51
VPS4B-204ENST00000589604 CRYGNQ8WXF5 182 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 TRIB2Q92519 343 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 GLT8D2Q9H1C3 349 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 TMEM60Q9H2L4 133 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 DACT1Q9NYF0 836 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 HPSEQ9Y251 543 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 MRPL11Q9Y3B7 192 aaKnown RBP11.87□□□□□ -0.51
VPS4B-204ENST00000589604 PIK3CDO00329 1044 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 BMP15O95972 392 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 CFBP00751 764 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 MCM7P33993 719 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 IRF5Q13568 498 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 RNF207Q6ZRF8 634 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 SH3TC2Q8TF17 1288 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 SOCS4Q8WXH5 440 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 MRPS27Q92552 414 aaKnown RBP11.87□□□□□ -0.51
VPS4B-204ENST00000589604 MAML3Q96JK9 1138 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 TAAR1Q96RJ0 339 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 APBA2Q99767 749 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 MCOLN1Q9GZU1 580 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 CEP131Q9UPN4 1083 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 LRRC37A2A6NM11 1700 aa11.87□□□□□ -0.51
VPS4B-204ENST00000589604 MCM3APO60318 1980 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms