RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 IL31RAQ8NI17 732 aa16.65■□□□□ 0.26
VMP1-206ENST00000587945 IGDCC4Q8TDY8 1250 aa16.65■□□□□ 0.26
VMP1-206ENST00000587945 KAT2BQ92831 832 aa16.65■□□□□ 0.26
VMP1-206ENST00000587945 PDCD2LQ9BRP1 358 aa16.65■□□□□ 0.26
VMP1-206ENST00000587945 MTIF3Q9H2K0 278 aaKnown RBP16.65■□□□□ 0.26
VMP1-206ENST00000587945 NKX2-4Q9H2Z4 354 aa16.65■□□□□ 0.26
VMP1-206ENST00000587945 YBX2Q9Y2T7 364 aaKnown RBP16.65■□□□□ 0.26
VMP1-206ENST00000587945 MRVI1Q9Y6F6 885 aa16.65■□□□□ 0.26
VMP1-206ENST00000587945 EYSQ5T1H1 3165 aa16.64■□□□□ 0.25
VMP1-206ENST00000587945 ZBBXA8MT70 800 aa16.64■□□□□ 0.25
VMP1-206ENST00000587945 RGS20O76081 388 aa16.64■□□□□ 0.25
VMP1-206ENST00000587945 RABGGTBP53611 331 aa16.64■□□□□ 0.25
VMP1-206ENST00000587945 COL9A3Q14050 684 aaPredicted RBP16.64■□□□□ 0.25
VMP1-206ENST00000587945 SART3Q15020 963 aaKnown RBP16.64■□□□□ 0.25
VMP1-206ENST00000587945 CATIPQ7Z7H3 387 aa16.64■□□□□ 0.25
VMP1-206ENST00000587945 FCHSD1Q86WN1 690 aa16.64■□□□□ 0.25
VMP1-206ENST00000587945 SKAP1Q86WV1 359 aa16.64■□□□□ 0.25
VMP1-206ENST00000587945 MYL10Q9BUA6 226 aa16.64■□□□□ 0.25
VMP1-206ENST00000587945 MSRAQ9UJ68 235 aa16.64■□□□□ 0.25
VMP1-206ENST00000587945 NOD1Q9Y239 953 aa16.64■□□□□ 0.25
VMP1-206ENST00000587945 UNC80Q8N2C7 3258 aa16.64■□□□□ 0.25
VMP1-206ENST00000587945 PNMA6FA0A0J9YX94 578 aa16.63■□□□□ 0.25
VMP1-206ENST00000587945 GCOM1H8Y6P7 765 aaPredicted RBP16.63■□□□□ 0.25
VMP1-206ENST00000587945 RBAK-RBAKDNI3L0D1 243 aa16.63■□□□□ 0.25
VMP1-206ENST00000587945 POLR2MP0CAP2 368 aa16.63■□□□□ 0.25
VMP1-206ENST00000587945 MYOGP15173 224 aa16.63■□□□□ 0.25
VMP1-206ENST00000587945 CASTP20810 708 aaKnown RBP16.63■□□□□ 0.25
VMP1-206ENST00000587945 PTPN11Q06124 597 aaPredicted RBP16.63■□□□□ 0.25
VMP1-206ENST00000587945 PTGISQ16647 500 aa16.63■□□□□ 0.25
VMP1-206ENST00000587945 GDF6Q6KF10 455 aaPredicted RBP16.63■□□□□ 0.25
VMP1-206ENST00000587945 RETREG2Q8NC44 543 aa16.63■□□□□ 0.25
VMP1-206ENST00000587945 LSG1Q9H089 658 aaKnown RBP16.63■□□□□ 0.25
VMP1-206ENST00000587945 PRDM12Q9H4Q4 367 aa16.63■□□□□ 0.25
VMP1-206ENST00000587945 SLC4A7Q9Y6M7 1214 aa16.63■□□□□ 0.25
VMP1-206ENST00000587945 IQCF3P0C7M6 154 aa16.62■□□□□ 0.25
VMP1-206ENST00000587945 ZNF286BP0CG31 522 aa16.62■□□□□ 0.25
VMP1-206ENST00000587945 LAMC2Q13753 1193 aa16.62■□□□□ 0.25
VMP1-206ENST00000587945 PGM5Q15124 567 aa16.62■□□□□ 0.25
VMP1-206ENST00000587945 RAB30Q15771 203 aa16.62■□□□□ 0.25
VMP1-206ENST00000587945 DGKDQ16760 1214 aa16.62■□□□□ 0.25
VMP1-206ENST00000587945 VSIG10LQ86VR7 867 aa16.62■□□□□ 0.25
VMP1-206ENST00000587945 DHX37Q8IY37 1157 aaKnown RBP16.62■□□□□ 0.25
VMP1-206ENST00000587945 USP38Q8NB14 1042 aa16.62■□□□□ 0.25
VMP1-206ENST00000587945 GPKOWQ92917 476 aaPredicted RBP eCLIP16.62■□□□□ 0.25
VMP1-206ENST00000587945 EMID1Q96A84 441 aaPredicted RBP16.62■□□□□ 0.25
VMP1-206ENST00000587945 CTAGE1Q96RT6 745 aa16.62■□□□□ 0.25
VMP1-206ENST00000587945 COL25A1Q9BXS0 654 aaPredicted RBP16.62■□□□□ 0.25
VMP1-206ENST00000587945 LY9Q9HBG7 655 aa16.62■□□□□ 0.25
VMP1-206ENST00000587945 MAP3K20Q9NYL2 800 aaKnown RBP16.62■□□□□ 0.25
VMP1-206ENST00000587945 PRC1O43663 620 aa16.61■□□□□ 0.25
VMP1-206ENST00000587945 PSEN2P49810 448 aa16.61■□□□□ 0.25
VMP1-206ENST00000587945 SP2Q02086 613 aa16.61■□□□□ 0.25
VMP1-206ENST00000587945 ZNF654Q8IZM8 581 aa16.61■□□□□ 0.25
VMP1-206ENST00000587945 ALG1Q9BT22 464 aa16.61■□□□□ 0.25
VMP1-206ENST00000587945 PITPNM1O00562 1244 aa16.6■□□□□ 0.25
VMP1-206ENST00000587945 SLC27A2O14975 620 aa16.6■□□□□ 0.25
VMP1-206ENST00000587945 PFKMP08237 780 aa16.6■□□□□ 0.25
VMP1-206ENST00000587945 ATP2A2P16615 1042 aaKnown RBP16.6■□□□□ 0.25
VMP1-206ENST00000587945 CCND2P30279 289 aa16.6■□□□□ 0.25
VMP1-206ENST00000587945 BFSP2Q13515 415 aa16.6■□□□□ 0.25
VMP1-206ENST00000587945 ADGRE1Q14246 886 aa16.6■□□□□ 0.25
VMP1-206ENST00000587945 CELF3Q5SZQ8 465 aaKnown RBP16.6■□□□□ 0.25
VMP1-206ENST00000587945 MYSM1Q5VVJ2 828 aa16.6■□□□□ 0.25
VMP1-206ENST00000587945 CASC1Q6TDU7 716 aa16.6■□□□□ 0.25
VMP1-206ENST00000587945 SESTD1Q86VW0 696 aa16.6■□□□□ 0.25
VMP1-206ENST00000587945 SAMD3Q8N6K7 520 aa16.6■□□□□ 0.25
VMP1-206ENST00000587945 PPTC7Q8NI37 304 aa16.6■□□□□ 0.25
VMP1-206ENST00000587945 PPM1EQ8WY54 764 aa16.6■□□□□ 0.25
VMP1-206ENST00000587945 DHX38Q92620 1227 aaKnown RBP16.6■□□□□ 0.25
VMP1-206ENST00000587945 SPATA33Q96N06 139 aa16.6■□□□□ 0.25
VMP1-206ENST00000587945 ESYT1Q9BSJ8 1104 aa16.6■□□□□ 0.25
VMP1-206ENST00000587945 FTOQ9C0B1 505 aaKnown RBP eCLIP16.6■□□□□ 0.25
VMP1-206ENST00000587945 HDAC6Q9UBN7 1215 aa16.6■□□□□ 0.25
VMP1-206ENST00000587945 SCN10AQ9Y5Y9 1956 aa16.59■□□□□ 0.25
VMP1-206ENST00000587945 PLEKHA8P1O95397 391 aa16.59■□□□□ 0.25
VMP1-206ENST00000587945 GGPS1O95749 300 aa16.59■□□□□ 0.25
VMP1-206ENST00000587945 RXRAP19793 462 aa16.59■□□□□ 0.25
VMP1-206ENST00000587945 UBA1P22314 1058 aaKnown RBP16.59■□□□□ 0.25
VMP1-206ENST00000587945 RFC2P35250 354 aa16.59■□□□□ 0.25
VMP1-206ENST00000587945 TRAF1Q13077 416 aa16.59■□□□□ 0.25
VMP1-206ENST00000587945 MFSD10Q14728 455 aa16.59■□□□□ 0.25
VMP1-206ENST00000587945 KIAA0753Q2KHM9 967 aa16.59■□□□□ 0.25
VMP1-206ENST00000587945 HSDL1Q3SXM5 330 aa16.59■□□□□ 0.25
VMP1-206ENST00000587945 NFXL1Q6ZNB6 911 aa16.59■□□□□ 0.25
VMP1-206ENST00000587945 RAB11FIP4Q86YS3 637 aa16.59■□□□□ 0.25
VMP1-206ENST00000587945 C7orf31Q8N865 590 aa16.59■□□□□ 0.25
VMP1-206ENST00000587945 CTCFLQ8NI51 663 aaPredicted RBP16.59■□□□□ 0.25
VMP1-206ENST00000587945 GAS2L1Q99501 681 aaPredicted RBP16.59■□□□□ 0.25
VMP1-206ENST00000587945 LRRC2Q9BYS8 371 aa16.59■□□□□ 0.25
VMP1-206ENST00000587945 BCAS3Q9H6U6 928 aa16.59■□□□□ 0.25
VMP1-206ENST00000587945 SLC28A3Q9HAS3 691 aa16.59■□□□□ 0.25
VMP1-206ENST00000587945 GTF2IRD1Q9UHL9 959 aa16.59■□□□□ 0.25
VMP1-206ENST00000587945 PRUNE2Q8WUY3 3088 aa16.58■□□□□ 0.24
VMP1-206ENST00000587945 HAS3O00219 553 aa16.58■□□□□ 0.24
VMP1-206ENST00000587945 SH2B2O14492 632 aaPredicted RBP16.58■□□□□ 0.24
VMP1-206ENST00000587945 DDAH1O94760 285 aa16.58■□□□□ 0.24
VMP1-206ENST00000587945 F2P00734 622 aa16.58■□□□□ 0.24
VMP1-206ENST00000587945 ACTN1P12814 892 aa16.58■□□□□ 0.24
VMP1-206ENST00000587945 MRPS9P82933 396 aaKnown RBP16.58■□□□□ 0.24
VMP1-206ENST00000587945 ZNF200P98182 395 aaPredicted RBP16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms