RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 SLC38A3Q99624 504 aa7.98□□□□□ -1.13
NUP88-213ENST00000576862 SIRT5Q9NXA8 310 aa7.98□□□□□ -1.13
NUP88-213ENST00000576862 SGSM2O43147 1006 aa7.97□□□□□ -1.13
NUP88-213ENST00000576862 TSPAN15O95858 294 aa7.97□□□□□ -1.13
NUP88-213ENST00000576862 EPHB3P54753 998 aa7.97□□□□□ -1.13
NUP88-213ENST00000576862 ZNF200P98182 395 aaPredicted RBP7.97□□□□□ -1.13
NUP88-213ENST00000576862 TMEM132EQ6IEE7 984 aa7.97□□□□□ -1.13
NUP88-213ENST00000576862 MAMDC2Q7Z304 686 aaPredicted RBP7.97□□□□□ -1.13
NUP88-213ENST00000576862 LDHDQ86WU2 507 aa7.97□□□□□ -1.13
NUP88-213ENST00000576862 IFNL3Q8IZI9 196 aa7.97□□□□□ -1.13
NUP88-213ENST00000576862 TSPAN17Q96FV3 270 aa7.97□□□□□ -1.13
NUP88-213ENST00000576862 PEX11GQ96HA9 241 aa7.97□□□□□ -1.13
NUP88-213ENST00000576862 PPP1R16BQ96T49 567 aa7.97□□□□□ -1.13
NUP88-213ENST00000576862 IRS2Q9Y4H2 1338 aa7.97□□□□□ -1.13
NUP88-213ENST00000576862 TMEM253P0C7T8 217 aa7.96□□□□□ -1.14
NUP88-213ENST00000576862 SLC6A11P48066 632 aa7.96□□□□□ -1.14
NUP88-213ENST00000576862 DCP2Q8IU60 420 aaKnown RBP7.96□□□□□ -1.14
NUP88-213ENST00000576862 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.96□□□□□ -1.14
NUP88-213ENST00000576862 RNPC3Q96LT9 517 aaKnown RBP7.96□□□□□ -1.14
NUP88-213ENST00000576862 JAM3Q9BX67 310 aa7.96□□□□□ -1.14
NUP88-213ENST00000576862 BCAS3Q9H6U6 928 aa7.96□□□□□ -1.14
NUP88-213ENST00000576862 DBR1Q9UK59 544 aaKnown RBP7.96□□□□□ -1.14
NUP88-213ENST00000576862 NUDT5Q9UKK9 219 aa7.96□□□□□ -1.14
NUP88-213ENST00000576862 PCDHA5Q9Y5H7 936 aa7.96□□□□□ -1.14
NUP88-213ENST00000576862 NCKAP1LP55160 1127 aa7.95□□□□□ -1.14
NUP88-213ENST00000576862 GABREP78334 506 aa7.95□□□□□ -1.14
NUP88-213ENST00000576862 KIZQ2M2Z5 673 aa7.95□□□□□ -1.14
NUP88-213ENST00000576862 ATG14Q6ZNE5 492 aa7.95□□□□□ -1.14
NUP88-213ENST00000576862 IGDCC3Q8IVU1 814 aa7.95□□□□□ -1.14
NUP88-213ENST00000576862 MZB1Q8WU39 189 aa7.95□□□□□ -1.14
NUP88-213ENST00000576862 KRTAP9-2Q9BYQ4 174 aa7.95□□□□□ -1.14
NUP88-213ENST00000576862 SLC52A2Q9HAB3 445 aa7.95□□□□□ -1.14
NUP88-213ENST00000576862 CD320Q9NPF0 282 aa7.95□□□□□ -1.14
NUP88-213ENST00000576862 COA3Q9Y2R0 106 aaPredicted RBP7.95□□□□□ -1.14
NUP88-213ENST00000576862 CCDC163A0A0D9SF12 145 aa7.94□□□□□ -1.14
NUP88-213ENST00000576862 N4BP3O15049 544 aa7.94□□□□□ -1.14
NUP88-213ENST00000576862 GRK2P25098 689 aa7.94□□□□□ -1.14
NUP88-213ENST00000576862 GRK3P35626 688 aa7.94□□□□□ -1.14
NUP88-213ENST00000576862 TRIM61Q5EBN2 209 aa7.94□□□□□ -1.14
NUP88-213ENST00000576862 CILP2Q8IUL8 1156 aa7.94□□□□□ -1.14
NUP88-213ENST00000576862 GSTCDQ8NEC7 633 aa7.94□□□□□ -1.14
NUP88-213ENST00000576862 SLC7A14Q8TBB6 771 aa7.94□□□□□ -1.14
NUP88-213ENST00000576862 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.94□□□□□ -1.14
NUP88-213ENST00000576862 SEC14L1Q92503 715 aa7.94□□□□□ -1.14
NUP88-213ENST00000576862 KRTAP4-12Q9BQ66 201 aa7.94□□□□□ -1.14
NUP88-213ENST00000576862 TMEM260Q9NX78 707 aa7.94□□□□□ -1.14
NUP88-213ENST00000576862 SMG5Q9UPR3 1016 aaKnown RBP7.94□□□□□ -1.14
NUP88-213ENST00000576862 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.93□□□□□ -1.14
NUP88-213ENST00000576862 NFIBO00712 420 aa7.93□□□□□ -1.14
NUP88-213ENST00000576862 AQP7O14520 342 aa7.93□□□□□ -1.14
NUP88-213ENST00000576862 IRS4O14654 1257 aaPredicted RBP7.93□□□□□ -1.14
NUP88-213ENST00000576862 IGSF3O75054 1194 aa7.93□□□□□ -1.14
NUP88-213ENST00000576862 ZBTB7AO95365 584 aa7.93□□□□□ -1.14
NUP88-213ENST00000576862 SOD2P04179 222 aa7.93□□□□□ -1.14
NUP88-213ENST00000576862 SLC9A5Q14940 896 aa7.93□□□□□ -1.14
NUP88-213ENST00000576862 JAZF1Q86VZ6 243 aa7.93□□□□□ -1.14
NUP88-213ENST00000576862 KRTAP19-1Q8IUB9 90 aa7.93□□□□□ -1.14
NUP88-213ENST00000576862 EPB41L1Q9H4G0 881 aa7.93□□□□□ -1.14
NUP88-213ENST00000576862 NCOA5Q9HCD5 579 aaKnown RBP7.93□□□□□ -1.14
NUP88-213ENST00000576862 PCDHA8Q9Y5H6 950 aa7.93□□□□□ -1.14
NUP88-213ENST00000576862 ESYT3A0FGR9 886 aa7.92□□□□□ -1.14
NUP88-213ENST00000576862 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.92□□□□□ -1.14
NUP88-213ENST00000576862 KCNQ2O43526 872 aa7.92□□□□□ -1.14
NUP88-213ENST00000576862 TADA3O75528 432 aa7.92□□□□□ -1.14
NUP88-213ENST00000576862 ASGR2P07307 311 aa7.92□□□□□ -1.14
NUP88-213ENST00000576862 IGFBP6P24592 240 aaPredicted RBP7.92□□□□□ -1.14
NUP88-213ENST00000576862 PMLP29590 882 aa7.92□□□□□ -1.14
NUP88-213ENST00000576862 RAP1GAPP47736 663 aa7.92□□□□□ -1.14
NUP88-213ENST00000576862 EMC4Q5J8M3 183 aa7.92□□□□□ -1.14
NUP88-213ENST00000576862 TMEFF1Q8IYR6 380 aa7.92□□□□□ -1.14
NUP88-213ENST00000576862 ALG3Q92685 438 aa7.92□□□□□ -1.14
NUP88-213ENST00000576862 MRPL4Q9BYD3 311 aaKnown RBP7.92□□□□□ -1.14
NUP88-213ENST00000576862 AP5M1Q9H0R1 490 aa7.92□□□□□ -1.14
NUP88-213ENST00000576862 IPPKQ9H8X2 491 aa7.92□□□□□ -1.14
NUP88-213ENST00000576862 NDOR1Q9UHB4 597 aa7.92□□□□□ -1.14
NUP88-213ENST00000576862 PALD1Q9ULE6 856 aa7.92□□□□□ -1.14
NUP88-213ENST00000576862 PCDHA9Q9Y5H5 950 aa7.92□□□□□ -1.14
NUP88-213ENST00000576862 TCAF2A6NFQ2 919 aa7.91□□□□□ -1.14
NUP88-213ENST00000576862 ARVCFO00192 962 aa7.91□□□□□ -1.14
NUP88-213ENST00000576862 DGKIO75912 1065 aa7.91□□□□□ -1.14
NUP88-213ENST00000576862 CRTAMO95727 393 aa7.91□□□□□ -1.14
NUP88-213ENST00000576862 ATF2P15336 505 aa7.91□□□□□ -1.14
NUP88-213ENST00000576862 MC3RP41968 323 aa7.91□□□□□ -1.14
NUP88-213ENST00000576862 SSPNQ14714 243 aa7.91□□□□□ -1.14
NUP88-213ENST00000576862 PKN1Q16512 942 aa7.91□□□□□ -1.14
NUP88-213ENST00000576862 STEAP3Q658P3 488 aa7.91□□□□□ -1.14
NUP88-213ENST00000576862 MILR1Q7Z6M3 343 aa7.91□□□□□ -1.14
NUP88-213ENST00000576862 MTDHQ86UE4 582 aaKnown RBP7.91□□□□□ -1.14
NUP88-213ENST00000576862 PIP4K2CQ8TBX8 421 aa7.91□□□□□ -1.14
NUP88-213ENST00000576862 SCLYQ96I15 445 aa7.91□□□□□ -1.14
NUP88-213ENST00000576862 CLUHP3Q96NS8 147 aa7.91□□□□□ -1.14
NUP88-213ENST00000576862 GOLGA2P5Q9HBQ8 144 aa7.91□□□□□ -1.14
NUP88-213ENST00000576862 EPB41L4AQ9HCS5 686 aaPredicted RBP7.91□□□□□ -1.14
NUP88-213ENST00000576862 ZNF652Q9Y2D9 606 aa7.91□□□□□ -1.14
NUP88-213ENST00000576862 MRPL42Q9Y6G3 142 aaKnown RBP7.91□□□□□ -1.14
NUP88-213ENST00000576862 WNT9AO14904 365 aa7.9□□□□□ -1.14
NUP88-213ENST00000576862 HGSO14964 777 aaPredicted RBP7.9□□□□□ -1.14
NUP88-213ENST00000576862 PPP1R12AO14974 1030 aaPredicted RBP7.9□□□□□ -1.14
NUP88-213ENST00000576862 BUB1BO60566 1050 aaPredicted RBP7.9□□□□□ -1.14
NUP88-213ENST00000576862 RAPGEF3O95398 923 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms