RNA–Protein interactions for RNA: ENST00000573827.1

SMG6-214, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-214ENST00000573827 TMEM240Q5SV17 173 aa20.19■□□□□ 0.82
SMG6-214ENST00000573827 AFG1LQ8WV93 481 aa20.19■□□□□ 0.82
SMG6-214ENST00000573827 KAT2BQ92831 832 aa20.19■□□□□ 0.82
SMG6-214ENST00000573827 GUCD1Q96NT3 240 aa20.19■□□□□ 0.82
SMG6-214ENST00000573827 GCOM1H8Y6P7 765 aaPredicted RBP20.18■□□□□ 0.82
SMG6-214ENST00000573827 KPNA6O60684 536 aa20.18■□□□□ 0.82
SMG6-214ENST00000573827 GH1P01241 217 aa20.18■□□□□ 0.82
SMG6-214ENST00000573827 MMP3P08254 477 aa20.18■□□□□ 0.82
SMG6-214ENST00000573827 POLR2MP0CAP2 368 aa20.18■□□□□ 0.82
SMG6-214ENST00000573827 HOXD8P13378 290 aaPredicted RBP20.18■□□□□ 0.82
SMG6-214ENST00000573827 RXRAP19793 462 aa20.18■□□□□ 0.82
SMG6-214ENST00000573827 TRAF1Q13077 416 aa20.18■□□□□ 0.82
SMG6-214ENST00000573827 ADCK5Q3MIX3 580 aa20.18■□□□□ 0.82
SMG6-214ENST00000573827 TMTC2Q8N394 836 aa20.18■□□□□ 0.82
SMG6-214ENST00000573827 PPP1R13LQ8WUF5 828 aa20.18■□□□□ 0.82
SMG6-214ENST00000573827 KCNB2Q92953 911 aa20.18■□□□□ 0.82
SMG6-214ENST00000573827 RNPC3Q96LT9 517 aaKnown RBP20.18■□□□□ 0.82
SMG6-214ENST00000573827 CTAGE1Q96RT6 745 aa20.18■□□□□ 0.82
SMG6-214ENST00000573827 HIPK3Q9H422 1215 aa20.18■□□□□ 0.82
SMG6-214ENST00000573827 VCANP13611 3396 aa20.18■□□□□ 0.82
SMG6-214ENST00000573827 KIF5BP33176 963 aa20.17■□□□□ 0.82
SMG6-214ENST00000573827 PPIGQ13427 754 aaKnown RBP eCLIP20.17■□□□□ 0.82
SMG6-214ENST00000573827 NFRKBQ6P4R8 1299 aa20.17■□□□□ 0.82
SMG6-214ENST00000573827 CMTR1Q8N1G2 835 aaKnown RBP20.17■□□□□ 0.82
SMG6-214ENST00000573827 CTCFLQ8NI51 663 aaPredicted RBP20.17■□□□□ 0.82
SMG6-214ENST00000573827 LZTS2Q9BRK4 669 aa20.17■□□□□ 0.82
SMG6-214ENST00000573827 TTYH1Q9H313 450 aaPredicted RBP20.17■□□□□ 0.82
SMG6-214ENST00000573827 MEIS2O14770 477 aa20.16■□□□□ 0.82
SMG6-214ENST00000573827 ACRP10323 421 aa20.16■□□□□ 0.82
SMG6-214ENST00000573827 MRPS9P82933 396 aaKnown RBP20.16■□□□□ 0.82
SMG6-214ENST00000573827 SP2Q02086 613 aa20.16■□□□□ 0.82
SMG6-214ENST00000573827 BRDTQ58F21 947 aaPredicted RBP20.16■□□□□ 0.82
SMG6-214ENST00000573827 TMTC3Q6ZXV5 915 aa20.16■□□□□ 0.82
SMG6-214ENST00000573827 RAB11FIP4Q86YS3 637 aa20.16■□□□□ 0.82
SMG6-214ENST00000573827 TMEM199Q8N511 208 aa20.16■□□□□ 0.82
SMG6-214ENST00000573827 PIBF1Q8WXW3 757 aa20.16■□□□□ 0.82
SMG6-214ENST00000573827 GPKOWQ92917 476 aaPredicted RBP eCLIP20.16■□□□□ 0.82
SMG6-214ENST00000573827 IL23AQ9NPF7 189 aa20.16■□□□□ 0.82
SMG6-214ENST00000573827 TRANK1O15050 2925 aa20.16■□□□□ 0.82
SMG6-214ENST00000573827 CCDC69A6NI79 296 aa20.15■□□□□ 0.82
SMG6-214ENST00000573827 PIK3CDO00329 1044 aa20.15■□□□□ 0.82
SMG6-214ENST00000573827 CYP2C9P11712 490 aa20.15■□□□□ 0.82
SMG6-214ENST00000573827 FUT2Q10981 343 aa20.15■□□□□ 0.82
SMG6-214ENST00000573827 ZNF365Q70YC5 407 aa20.15■□□□□ 0.82
SMG6-214ENST00000573827 FCHSD1Q86WN1 690 aa20.15■□□□□ 0.82
SMG6-214ENST00000573827 FANCBQ8NB91 859 aa20.15■□□□□ 0.82
SMG6-214ENST00000573827 CCDC136Q96JN2 1154 aa20.15■□□□□ 0.82
SMG6-214ENST00000573827 ZFP91Q96JP5 570 aaPredicted RBP20.15■□□□□ 0.82
SMG6-214ENST00000573827 NEK1Q96PY6 1258 aa20.15■□□□□ 0.82
SMG6-214ENST00000573827 BRPF3Q9ULD4 1205 aa20.15■□□□□ 0.82
SMG6-214ENST00000573827 STXBP5LQ9Y2K9 1186 aa20.15■□□□□ 0.82
SMG6-214ENST00000573827 MRVI1Q9Y6F6 885 aa20.15■□□□□ 0.82
SMG6-214ENST00000573827 MYCLP12524 364 aaPredicted RBP20.14■□□□□ 0.81
SMG6-214ENST00000573827 GNAQP50148 359 aa20.14■□□□□ 0.81
SMG6-214ENST00000573827 CCL23P55773 120 aa20.14■□□□□ 0.81
SMG6-214ENST00000573827 PTPN11Q06124 597 aaPredicted RBP20.14■□□□□ 0.81
SMG6-214ENST00000573827 SEMA3FQ13275 785 aa20.14■□□□□ 0.81
SMG6-214ENST00000573827 RNF20Q5VTR2 975 aa20.14■□□□□ 0.81
SMG6-214ENST00000573827 MYSM1Q5VVJ2 828 aa20.14■□□□□ 0.81
SMG6-214ENST00000573827 APOA5Q6Q788 366 aa20.14■□□□□ 0.81
SMG6-214ENST00000573827 NFXL1Q6ZNB6 911 aa20.14■□□□□ 0.81
SMG6-214ENST00000573827 SESTD1Q86VW0 696 aa20.14■□□□□ 0.81
SMG6-214ENST00000573827 PPTC7Q8NI37 304 aa20.14■□□□□ 0.81
SMG6-214ENST00000573827 RRP36Q96EU6 259 aaKnown RBP20.14■□□□□ 0.81
SMG6-214ENST00000573827 TCEANC2Q96MN5 208 aa20.14■□□□□ 0.81
SMG6-214ENST00000573827 INPP4AQ96PE3 977 aaPredicted RBP20.14■□□□□ 0.81
SMG6-214ENST00000573827 SEMA6BQ9H3T3 888 aa20.14■□□□□ 0.81
SMG6-214ENST00000573827 BCAS3Q9H6U6 928 aa20.14■□□□□ 0.81
SMG6-214ENST00000573827 CXXC1Q9P0U4 656 aaPredicted RBP20.14■□□□□ 0.81
SMG6-214ENST00000573827 SLC12A7Q9Y666 1083 aa20.14■□□□□ 0.81
SMG6-214ENST00000573827 SPTBN5Q9NRC6 3674 aaKnown RBP20.13■□□□□ 0.81
SMG6-214ENST00000573827 HAS3O00219 553 aa20.13■□□□□ 0.81
SMG6-214ENST00000573827 CALM1P0DP23 149 aa20.13■□□□□ 0.81
SMG6-214ENST00000573827 CALM2P0DP24 149 aa20.13■□□□□ 0.81
SMG6-214ENST00000573827 CALM3P0DP25 149 aa20.13■□□□□ 0.81
SMG6-214ENST00000573827 UBA1P22314 1058 aaKnown RBP20.13■□□□□ 0.81
SMG6-214ENST00000573827 LAMC2Q13753 1193 aa20.13■□□□□ 0.81
SMG6-214ENST00000573827 PSRC1Q6PGN9 363 aaPredicted RBP20.13■□□□□ 0.81
SMG6-214ENST00000573827 USP17L6PQ6QN14 398 aa20.13■□□□□ 0.81
SMG6-214ENST00000573827 DHX32Q7L7V1 743 aaKnown RBP20.13■□□□□ 0.81
SMG6-214ENST00000573827 HERVK_113Q902F9 699 aa20.13■□□□□ 0.81
SMG6-214ENST00000573827 TET1Q8NFU7 2136 aa20.12■□□□□ 0.81
SMG6-214ENST00000573827 TTC28Q96AY4 2481 aa20.12■□□□□ 0.81
SMG6-214ENST00000573827 hCG_1642624A0A1W2PR95 340 aa20.12■□□□□ 0.81
SMG6-214ENST00000573827 F2P00734 622 aa20.12■□□□□ 0.81
SMG6-214ENST00000573827 SUPT20HL2P0C7V6 817 aa20.12■□□□□ 0.81
SMG6-214ENST00000573827 CCND2P30279 289 aa20.12■□□□□ 0.81
SMG6-214ENST00000573827 ICAM3P32942 547 aa20.12■□□□□ 0.81
SMG6-214ENST00000573827 HSDL1Q3SXM5 330 aa20.12■□□□□ 0.81
SMG6-214ENST00000573827 CELF3Q5SZQ8 465 aaKnown RBP20.12■□□□□ 0.81
SMG6-214ENST00000573827 SCLYQ96I15 445 aa20.12■□□□□ 0.81
SMG6-214ENST00000573827 FAM217BQ9NTX9 383 aaPredicted RBP20.12■□□□□ 0.81
SMG6-214ENST00000573827 MYO9BQ13459 2157 aa20.12■□□□□ 0.81
SMG6-214ENST00000573827 MYH7BA7E2Y1 1941 aa20.12■□□□□ 0.81
SMG6-214ENST00000573827 CNTNAP5Q8WYK1 1306 aa20.11■□□□□ 0.81
SMG6-214ENST00000573827 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.11■□□□□ 0.81
SMG6-214ENST00000573827 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.11■□□□□ 0.81
SMG6-214ENST00000573827 TGFB3P10600 412 aa20.11■□□□□ 0.81
SMG6-214ENST00000573827 DGKDQ16760 1214 aa20.11■□□□□ 0.81
SMG6-214ENST00000573827 KCNV1Q6PIU1 500 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms