RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 IGHA2P01877 340 aa23.62■■□□□ 1.37
VPS53-210ENST00000571456 NSUN7Q8NE18 718 aaKnown RBP23.62■■□□□ 1.37
VPS53-210ENST00000571456 NPLOC4Q8TAT6 608 aa23.62■■□□□ 1.37
VPS53-210ENST00000571456 SYTL5Q8TDW5 730 aaPredicted RBP23.62■■□□□ 1.37
VPS53-210ENST00000571456 NSUN6Q8TEA1 469 aaKnown RBP23.62■■□□□ 1.37
VPS53-210ENST00000571456 GPKOWQ92917 476 aaPredicted RBP eCLIP23.62■■□□□ 1.37
VPS53-210ENST00000571456 IWS1Q96ST2 819 aa23.62■■□□□ 1.37
VPS53-210ENST00000571456 TINF2Q9BSI4 451 aa23.62■■□□□ 1.37
VPS53-210ENST00000571456 ZMYND12Q9H0C1 365 aa23.62■■□□□ 1.37
VPS53-210ENST00000571456 RIC8AQ9NPQ8 531 aa23.62■■□□□ 1.37
VPS53-210ENST00000571456 ORC3Q9UBD5 711 aaPredicted RBP23.62■■□□□ 1.37
VPS53-210ENST00000571456 LCTP09848 1927 aa23.61■■□□□ 1.37
VPS53-210ENST00000571456 CTDNEP1O95476 244 aa23.61■■□□□ 1.37
VPS53-210ENST00000571456 FOSP01100 380 aaPredicted RBP23.61■■□□□ 1.37
VPS53-210ENST00000571456 CALML3P27482 149 aa23.61■■□□□ 1.37
VPS53-210ENST00000571456 CNGA1P29973 690 aa23.61■■□□□ 1.37
VPS53-210ENST00000571456 HOXD11P31277 338 aaPredicted RBP23.61■■□□□ 1.37
VPS53-210ENST00000571456 GRIN2CQ14957 1233 aa23.61■■□□□ 1.37
VPS53-210ENST00000571456 CCDC83Q8IWF9 413 aa23.61■■□□□ 1.37
VPS53-210ENST00000571456 SMARCC2Q8TAQ2 1214 aa23.61■■□□□ 1.37
VPS53-210ENST00000571456 TAL1P17542 331 aaPredicted RBP23.6■■□□□ 1.37
VPS53-210ENST00000571456 ADCY7P51828 1080 aa23.6■■□□□ 1.37
VPS53-210ENST00000571456 SLC30A10Q6XR72 485 aa23.6■■□□□ 1.37
VPS53-210ENST00000571456 SLC39A5Q6ZMH5 540 aa23.6■■□□□ 1.37
VPS53-210ENST00000571456 MORC4Q8TE76 937 aa23.6■■□□□ 1.37
VPS53-210ENST00000571456 EHMT1Q9H9B1 1298 aa23.6■■□□□ 1.37
VPS53-210ENST00000571456 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.6■■□□□ 1.37
VPS53-210ENST00000571456 SMCO2A6NFE2 343 aa23.59■■□□□ 1.37
VPS53-210ENST00000571456 ALDH5A1P51649 535 aaPredicted RBP23.59■■□□□ 1.37
VPS53-210ENST00000571456 AP3B2Q13367 1082 aa23.59■■□□□ 1.37
VPS53-210ENST00000571456 ATXN2LQ8WWM7 1075 aaKnown RBP23.59■■□□□ 1.37
VPS53-210ENST00000571456 FLRT1Q9NZU1 646 aa23.59■■□□□ 1.37
VPS53-210ENST00000571456 CNPY2Q9Y2B0 182 aa23.59■■□□□ 1.37
VPS53-210ENST00000571456 SOWAHBA6NEL2 793 aa23.58■■□□□ 1.37
VPS53-210ENST00000571456 MEIS2O14770 477 aa23.58■■□□□ 1.37
VPS53-210ENST00000571456 CD2BP2O95400 341 aaKnown RBP23.58■■□□□ 1.37
VPS53-210ENST00000571456 CNTN2Q02246 1040 aa23.58■■□□□ 1.37
VPS53-210ENST00000571456 RNPC3Q96LT9 517 aaKnown RBP23.58■■□□□ 1.37
VPS53-210ENST00000571456 RMDN3Q96TC7 470 aa23.58■■□□□ 1.37
VPS53-210ENST00000571456 ABHD16BQ9H3Z7 469 aa23.58■■□□□ 1.37
VPS53-210ENST00000571456 PDLIM7Q9NR12 457 aa23.58■■□□□ 1.37
VPS53-210ENST00000571456 PIEZO1Q92508 2521 aa23.57■■□□□ 1.36
VPS53-210ENST00000571456 SPDYE3A6NKU9 549 aa23.57■■□□□ 1.36
VPS53-210ENST00000571456 ST3GAL1Q11201 340 aa23.57■■□□□ 1.36
VPS53-210ENST00000571456 TRIM60Q495X7 471 aa23.57■■□□□ 1.36
VPS53-210ENST00000571456 GJC2Q5T442 439 aaPredicted RBP23.57■■□□□ 1.36
VPS53-210ENST00000571456 XRRA1Q6P2D8 792 aa23.57■■□□□ 1.36
VPS53-210ENST00000571456 HSCBQ8IWL3 235 aa23.57■■□□□ 1.36
VPS53-210ENST00000571456 ARRDC4Q8NCT1 418 aa23.57■■□□□ 1.36
VPS53-210ENST00000571456 TBC1D5Q92609 795 aa23.57■■□□□ 1.36
VPS53-210ENST00000571456 FGD4Q96M96 766 aa23.57■■□□□ 1.36
VPS53-210ENST00000571456 MCM3APO60318 1980 aa23.57■■□□□ 1.36
VPS53-210ENST00000571456 TRIM43BA6NCK2 446 aa23.56■■□□□ 1.36
VPS53-210ENST00000571456 K7ELQ4 463 aaPredicted RBP23.56■■□□□ 1.36
VPS53-210ENST00000571456 STAM2O75886 525 aa23.56■■□□□ 1.36
VPS53-210ENST00000571456 EDNRBP24530 442 aa23.56■■□□□ 1.36
VPS53-210ENST00000571456 TRIM29Q14134 588 aa23.56■■□□□ 1.36
VPS53-210ENST00000571456 SNX17Q15036 470 aa23.56■■□□□ 1.36
VPS53-210ENST00000571456 ARHGEF16Q5VV41 709 aa23.56■■□□□ 1.36
VPS53-210ENST00000571456 TYW1BQ6NUM6 668 aa23.56■■□□□ 1.36
VPS53-210ENST00000571456 ARMCX2Q7L311 632 aa23.56■■□□□ 1.36
VPS53-210ENST00000571456 FAM184AQ8NB25 1140 aa23.56■■□□□ 1.36
VPS53-210ENST00000571456 DAGLBQ8NCG7 672 aa23.56■■□□□ 1.36
VPS53-210ENST00000571456 ADAMTS19Q8TE59 1207 aa23.56■■□□□ 1.36
VPS53-210ENST00000571456 TRIM43Q96BQ3 446 aaPredicted RBP23.56■■□□□ 1.36
VPS53-210ENST00000571456 ASB2Q96Q27 587 aa23.56■■□□□ 1.36
VPS53-210ENST00000571456 PXMP2Q9NR77 195 aa23.56■■□□□ 1.36
VPS53-210ENST00000571456 FRMPD4Q14CM0 1322 aa23.56■■□□□ 1.36
VPS53-210ENST00000571456 KBTBD13C9JR72 458 aa23.55■■□□□ 1.36
VPS53-210ENST00000571456 FDPSP14324 419 aaKnown RBP23.55■■□□□ 1.36
VPS53-210ENST00000571456 HOXA13P31271 388 aaPredicted RBP23.55■■□□□ 1.36
VPS53-210ENST00000571456 NLRP5P59047 1200 aa23.55■■□□□ 1.36
VPS53-210ENST00000571456 CUL4AQ13619 759 aa23.55■■□□□ 1.36
VPS53-210ENST00000571456 SH3RF1Q7Z6J0 888 aa23.55■■□□□ 1.36
VPS53-210ENST00000571456 REXO1Q8N1G1 1221 aaKnown RBP23.55■■□□□ 1.36
VPS53-210ENST00000571456 INTS4Q96HW7 963 aaKnown RBP23.55■■□□□ 1.36
VPS53-210ENST00000571456 TAAR1Q96RJ0 339 aa23.55■■□□□ 1.36
VPS53-210ENST00000571456 ALG1Q9BT22 464 aa23.55■■□□□ 1.36
VPS53-210ENST00000571456 VTA1Q9NP79 307 aa23.55■■□□□ 1.36
VPS53-210ENST00000571456 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.55■■□□□ 1.36
VPS53-210ENST00000571456 VPS54Q9P1Q0 977 aa23.55■■□□□ 1.36
VPS53-210ENST00000571456 DNAJB2P25686 324 aa23.54■■□□□ 1.36
VPS53-210ENST00000571456 PDE4DQ08499 809 aa23.54■■□□□ 1.36
VPS53-210ENST00000571456 USP17L6PQ6QN14 398 aa23.54■■□□□ 1.36
VPS53-210ENST00000571456 TRPV1Q8NER1 839 aa23.54■■□□□ 1.36
VPS53-210ENST00000571456 BRMS1Q9HCU9 246 aa23.54■■□□□ 1.36
VPS53-210ENST00000571456 COL20A1Q9P218 1284 aa23.54■■□□□ 1.36
VPS53-210ENST00000571456 PCDHA4Q9UN74 947 aa23.54■■□□□ 1.36
VPS53-210ENST00000571456 JAK2O60674 1132 aa23.53■■□□□ 1.36
VPS53-210ENST00000571456 CYBAP13498 195 aa23.53■■□□□ 1.36
VPS53-210ENST00000571456 CYP2C19P33261 490 aa23.53■■□□□ 1.36
VPS53-210ENST00000571456 CLK2P49760 499 aaKnown RBP23.53■■□□□ 1.36
VPS53-210ENST00000571456 STXBP2Q15833 593 aa23.53■■□□□ 1.36
VPS53-210ENST00000571456 FCHSD1Q86WN1 690 aa23.53■■□□□ 1.36
VPS53-210ENST00000571456 UHRF1Q96T88 793 aaPredicted RBP23.53■■□□□ 1.36
VPS53-210ENST00000571456 PDCD2LQ9BRP1 358 aa23.53■■□□□ 1.36
VPS53-210ENST00000571456 ZNF576Q9H609 170 aa23.53■■□□□ 1.36
VPS53-210ENST00000571456 THEGQ9P2T0 379 aa23.53■■□□□ 1.36
VPS53-210ENST00000571456 PPFIA3O75145 1194 aa23.52■■□□□ 1.36
VPS53-210ENST00000571456 EIF3JO75822 258 aaKnown RBP23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms