RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 CCDC62Q6P9F0 684 aa10.63□□□□□ -0.71
VPS35-211ENST00000569950 FBXO46Q6PJ61 603 aaPredicted RBP10.63□□□□□ -0.71
VPS35-211ENST00000569950 CCAR1Q8IX12 1150 aaKnown RBP10.63□□□□□ -0.71
VPS35-211ENST00000569950 MSL3Q8N5Y2 521 aaKnown RBP10.63□□□□□ -0.71
VPS35-211ENST00000569950 FAM184AQ8NB25 1140 aa10.63□□□□□ -0.71
VPS35-211ENST00000569950 SH3TC2Q8TF17 1288 aa10.63□□□□□ -0.71
VPS35-211ENST00000569950 INPP4AQ96PE3 977 aaPredicted RBP10.63□□□□□ -0.71
VPS35-211ENST00000569950 IWS1Q96ST2 819 aa10.63□□□□□ -0.71
VPS35-211ENST00000569950 GLT8D2Q9H1C3 349 aa10.63□□□□□ -0.71
VPS35-211ENST00000569950 BCAS3Q9H6U6 928 aa10.63□□□□□ -0.71
VPS35-211ENST00000569950 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.63□□□□□ -0.71
VPS35-211ENST00000569950 UBIAD1Q9Y5Z9 338 aa10.63□□□□□ -0.71
VPS35-211ENST00000569950 FOSP01100 380 aaPredicted RBP10.62□□□□□ -0.71
VPS35-211ENST00000569950 HMGCRP04035 888 aa10.62□□□□□ -0.71
VPS35-211ENST00000569950 INHAP05111 366 aa10.62□□□□□ -0.71
VPS35-211ENST00000569950 CCND3P30281 292 aaPredicted RBP10.62□□□□□ -0.71
VPS35-211ENST00000569950 GRK4P32298 578 aa10.62□□□□□ -0.71
VPS35-211ENST00000569950 KRT2P35908 639 aa10.62□□□□□ -0.71
VPS35-211ENST00000569950 INF2Q27J81 1249 aa10.62□□□□□ -0.71
VPS35-211ENST00000569950 COL13A1Q5TAT6 717 aaPredicted RBP10.62□□□□□ -0.71
VPS35-211ENST00000569950 KRT25Q7Z3Z0 450 aa10.62□□□□□ -0.71
VPS35-211ENST00000569950 FBXO16Q8IX29 292 aaPredicted RBP10.62□□□□□ -0.71
VPS35-211ENST00000569950 SLAIN1Q8ND83 568 aa10.62□□□□□ -0.71
VPS35-211ENST00000569950 BICD2Q8TD16 824 aa10.62□□□□□ -0.71
VPS35-211ENST00000569950 TBCKQ8TEA7 893 aa10.62□□□□□ -0.71
VPS35-211ENST00000569950 ARMC5Q96C12 935 aa10.62□□□□□ -0.71
VPS35-211ENST00000569950 MCOLN1Q9GZU1 580 aa10.62□□□□□ -0.71
VPS35-211ENST00000569950 FOXP1Q9H334 677 aaPredicted RBP10.62□□□□□ -0.71
VPS35-211ENST00000569950 ADD3Q9UEY8 706 aaKnown RBP10.62□□□□□ -0.71
VPS35-211ENST00000569950 TELO2Q9Y4R8 837 aa10.62□□□□□ -0.71
VPS35-211ENST00000569950 CYP3A7-CYP3A51PA0A087WV96 503 aa10.61□□□□□ -0.71
VPS35-211ENST00000569950 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.61□□□□□ -0.71
VPS35-211ENST00000569950 ASB14A6NK59 587 aa10.61□□□□□ -0.71
VPS35-211ENST00000569950 MEIS1O00470 390 aa10.61□□□□□ -0.71
VPS35-211ENST00000569950 CTAGE5O15320 804 aa10.61□□□□□ -0.71
VPS35-211ENST00000569950 STX6O43752 255 aa10.61□□□□□ -0.71
VPS35-211ENST00000569950 TDP2O95551 362 aa10.61□□□□□ -0.71
VPS35-211ENST00000569950 BRD1O95696 1058 aa10.61□□□□□ -0.71
VPS35-211ENST00000569950 PRKAR2AP13861 404 aaKnown RBP10.61□□□□□ -0.71
VPS35-211ENST00000569950 CYP3A7P24462 503 aa10.61□□□□□ -0.71
VPS35-211ENST00000569950 ICAM3P32942 547 aa10.61□□□□□ -0.71
VPS35-211ENST00000569950 SP2Q02086 613 aa10.61□□□□□ -0.71
VPS35-211ENST00000569950 BECN1Q14457 450 aa10.61□□□□□ -0.71
VPS35-211ENST00000569950 MTFR1Q15390 333 aa10.61□□□□□ -0.71
VPS35-211ENST00000569950 ARHGEF16Q5VV41 709 aa10.61□□□□□ -0.71
VPS35-211ENST00000569950 PIK3AP1Q6ZUJ8 805 aa10.61□□□□□ -0.71
VPS35-211ENST00000569950 NOSTRINQ8IVI9 506 aa10.61□□□□□ -0.71
VPS35-211ENST00000569950 RAET1EQ8TD07 263 aa10.61□□□□□ -0.71
VPS35-211ENST00000569950 LENG1Q96BZ8 264 aaPredicted RBP10.61□□□□□ -0.71
VPS35-211ENST00000569950 ZNF333Q96JL9 665 aa10.61□□□□□ -0.71
VPS35-211ENST00000569950 CWC22Q9HCG8 908 aaKnown RBP10.61□□□□□ -0.71
VPS35-211ENST00000569950 SPDYE3A6NKU9 549 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 SPATA31C2B4DYI2 1134 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 DHX15O43143 795 aaKnown RBP10.6□□□□□ -0.71
VPS35-211ENST00000569950 SLC37A4O43826 429 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 ATP9AO75110 1047 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 XBP1P17861 261 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 ADCYAP1R1P41586 468 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 IRX5P78411 483 aaPredicted RBP10.6□□□□□ -0.71
VPS35-211ENST00000569950 ACVR2BQ13705 512 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 NBR1Q14596 966 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 ARHGEF6Q15052 776 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 NONOQ15233 471 aaKnown RBP eCLIP10.6□□□□□ -0.71
VPS35-211ENST00000569950 PKN2Q16513 984 aaKnown RBP10.6□□□□□ -0.71
VPS35-211ENST00000569950 GJC2Q5T442 439 aaPredicted RBP10.6□□□□□ -0.71
VPS35-211ENST00000569950 LHX8Q68G74 356 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 MCTP2Q6DN12 878 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 XRRA1Q6P2D8 792 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 FAM173BQ6P4H8 233 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 EEPD1Q7L9B9 569 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 FERMT3Q86UX7 667 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 TRMT44Q8IYL2 757 aaKnown RBP10.6□□□□□ -0.71
VPS35-211ENST00000569950 C4orf32Q8N8J7 132 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 CHAMP1Q96JM3 812 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 MXRA8Q9BRK3 442 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 WDR11Q9BZH6 1224 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 UNC93B1Q9H1C4 597 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 ABHD16BQ9H3Z7 469 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 VTA1Q9NP79 307 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 PAK6Q9NQU5 681 aaPredicted RBP10.6□□□□□ -0.71
VPS35-211ENST00000569950 SLC5A4Q9NY91 659 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 NRBP1Q9UHY1 535 aa10.6□□□□□ -0.71
VPS35-211ENST00000569950 GNEQ9Y223 722 aaKnown RBP10.6□□□□□ -0.71
VPS35-211ENST00000569950 VPS37CA5D8V6 355 aaPredicted RBP10.59□□□□□ -0.71
VPS35-211ENST00000569950 EIF3JO75822 258 aaKnown RBP10.59□□□□□ -0.71
VPS35-211ENST00000569950 ARP10275 920 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 MYCLP12524 364 aaPredicted RBP10.59□□□□□ -0.71
VPS35-211ENST00000569950 KCNA2P16389 499 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 SMPD1P17405 629 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 PDCP20941 246 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 CCND2P30279 289 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 MNX1P50219 401 aaPredicted RBP10.59□□□□□ -0.71
VPS35-211ENST00000569950 USP11P51784 963 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 NKX3-2P78367 333 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 PDE4DQ08499 809 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 ITGB3BPQ13352 177 aaPredicted RBP10.59□□□□□ -0.71
VPS35-211ENST00000569950 TRIM29Q14134 588 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 STXBP2Q15833 593 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 CCDC144BQ3MJ40 725 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 CEP55Q53EZ4 464 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms