RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 CASC1Q6TDU7 716 aa14.05□□□□□ -0.16
VPS9D1-207ENST00000568691 RPAINQ86UA6 219 aa14.05□□□□□ -0.16
VPS9D1-207ENST00000568691 CAGE1Q8TC20 777 aa14.05□□□□□ -0.16
VPS9D1-207ENST00000568691 CHMP4CQ96CF2 233 aa14.05□□□□□ -0.16
VPS9D1-207ENST00000568691 UPF3BQ9BZI7 483 aaKnown RBP14.05□□□□□ -0.16
VPS9D1-207ENST00000568691 CLDND1Q9NY35 253 aa14.05□□□□□ -0.16
VPS9D1-207ENST00000568691 PRDM1O75626 825 aa14.04□□□□□ -0.16
VPS9D1-207ENST00000568691 IFIT2P09913 472 aaKnown RBP14.04□□□□□ -0.16
VPS9D1-207ENST00000568691 LINC00271P0C7V0 271 aa14.04□□□□□ -0.16
VPS9D1-207ENST00000568691 GTF2F1P35269 517 aaKnown RBP eCLIP14.04□□□□□ -0.16
VPS9D1-207ENST00000568691 BAATQ14032 418 aaPredicted RBP14.04□□□□□ -0.16
VPS9D1-207ENST00000568691 TIGD5Q53EQ6 642 aa14.04□□□□□ -0.16
VPS9D1-207ENST00000568691 NSMFQ6X4W1 530 aa14.04□□□□□ -0.16
VPS9D1-207ENST00000568691 EP400NLQ6ZTU2 488 aa14.04□□□□□ -0.16
VPS9D1-207ENST00000568691 ASCL5Q7RTU5 278 aa14.04□□□□□ -0.16
VPS9D1-207ENST00000568691 SESTD1Q86VW0 696 aa14.04□□□□□ -0.16
VPS9D1-207ENST00000568691 PBXIP1Q96AQ6 731 aa14.04□□□□□ -0.16
VPS9D1-207ENST00000568691 OSBPL7Q9BZF2 842 aa14.04□□□□□ -0.16
VPS9D1-207ENST00000568691 MYH4Q9Y623 1939 aa14.03□□□□□ -0.16
VPS9D1-207ENST00000568691 FAM186AA6NE01 2351 aa14.03□□□□□ -0.16
VPS9D1-207ENST00000568691 GVINP1Q7Z2Y8 2422 aa14.03□□□□□ -0.16
VPS9D1-207ENST00000568691 GSG1L2A8MUP6 293 aa14.03□□□□□ -0.16
VPS9D1-207ENST00000568691 NFIBO00712 420 aa14.03□□□□□ -0.16
VPS9D1-207ENST00000568691 TBX10O75333 385 aa14.03□□□□□ -0.16
VPS9D1-207ENST00000568691 FDX1P10109 184 aa14.03□□□□□ -0.16
VPS9D1-207ENST00000568691 HYAL1Q12794 435 aa14.03□□□□□ -0.16
VPS9D1-207ENST00000568691 GPM6BQ13491 265 aa14.03□□□□□ -0.16
VPS9D1-207ENST00000568691 HIC1Q14526 733 aa14.03□□□□□ -0.16
VPS9D1-207ENST00000568691 PI4K2BQ8TCG2 481 aa14.03□□□□□ -0.16
VPS9D1-207ENST00000568691 STAG1Q8WVM7 1258 aa14.03□□□□□ -0.16
VPS9D1-207ENST00000568691 NSUN3Q9H649 340 aaKnown RBP14.03□□□□□ -0.16
VPS9D1-207ENST00000568691 EPB41L4AQ9HCS5 686 aaPredicted RBP14.03□□□□□ -0.16
VPS9D1-207ENST00000568691 GPHNQ9NQX3 736 aaPredicted RBP14.03□□□□□ -0.16
VPS9D1-207ENST00000568691 ECHDC1Q9NTX5 307 aa14.03□□□□□ -0.16
VPS9D1-207ENST00000568691 PAG1Q9NWQ8 432 aa14.03□□□□□ -0.16
VPS9D1-207ENST00000568691 SYNPO2Q9UMS6 1093 aa14.03□□□□□ -0.16
VPS9D1-207ENST00000568691 INSL6Q9Y581 213 aa14.03□□□□□ -0.16
VPS9D1-207ENST00000568691 LINC01565O15544 149 aa14.02□□□□□ -0.17
VPS9D1-207ENST00000568691 SDSP20132 328 aa14.02□□□□□ -0.17
VPS9D1-207ENST00000568691 EDNRBP24530 442 aa14.02□□□□□ -0.17
VPS9D1-207ENST00000568691 STAT2P52630 851 aa14.02□□□□□ -0.17
VPS9D1-207ENST00000568691 UBE3CQ15386 1083 aa14.02□□□□□ -0.17
VPS9D1-207ENST00000568691 PTPROQ16827 1216 aa14.02□□□□□ -0.17
VPS9D1-207ENST00000568691 ZNF618Q5T7W0 954 aa14.02□□□□□ -0.17
VPS9D1-207ENST00000568691 SLC30A10Q6XR72 485 aa14.02□□□□□ -0.17
VPS9D1-207ENST00000568691 TICAM2Q86XR7 235 aa14.02□□□□□ -0.17
VPS9D1-207ENST00000568691 FBXL6Q8N531 539 aa14.02□□□□□ -0.17
VPS9D1-207ENST00000568691 ASIC4Q96FT7 647 aa14.02□□□□□ -0.17
VPS9D1-207ENST00000568691 STRBPQ96SI9 672 aaKnown RBP14.02□□□□□ -0.17
VPS9D1-207ENST00000568691 ARPP21Q9UBL0 812 aaPredicted RBP14.02□□□□□ -0.17
VPS9D1-207ENST00000568691 PRR12Q9ULL5 1215 aa14.02□□□□□ -0.17
VPS9D1-207ENST00000568691 NOD1Q9Y239 953 aa14.02□□□□□ -0.17
VPS9D1-207ENST00000568691 PROB1E7EW31 1015 aa14.01□□□□□ -0.17
VPS9D1-207ENST00000568691 PLA2G6O60733 806 aa14.01□□□□□ -0.17
VPS9D1-207ENST00000568691 TTLL1O95922 423 aa14.01□□□□□ -0.17
VPS9D1-207ENST00000568691 MCCP23508 829 aa14.01□□□□□ -0.17
VPS9D1-207ENST00000568691 CHMP4BP1P59074 171 aa14.01□□□□□ -0.17
VPS9D1-207ENST00000568691 ZXDAP98168 799 aa14.01□□□□□ -0.17
VPS9D1-207ENST00000568691 ZNF200P98182 395 aaPredicted RBP14.01□□□□□ -0.17
VPS9D1-207ENST00000568691 IKBKEQ14164 716 aa14.01□□□□□ -0.17
VPS9D1-207ENST00000568691 KCTD1Q719H9 257 aa14.01□□□□□ -0.17
VPS9D1-207ENST00000568691 AMOTL1Q8IY63 956 aa14.01□□□□□ -0.17
VPS9D1-207ENST00000568691 TMEM192Q8IY95 271 aa14.01□□□□□ -0.17
VPS9D1-207ENST00000568691 GMCL1Q96IK5 515 aa14.01□□□□□ -0.17
VPS9D1-207ENST00000568691 BOLA2Q9H3K6 86 aa14.01□□□□□ -0.17
VPS9D1-207ENST00000568691 MKNK2Q9HBH9 465 aa14.01□□□□□ -0.17
VPS9D1-207ENST00000568691 CTNNA3Q9UI47 895 aa14.01□□□□□ -0.17
VPS9D1-207ENST00000568691 FAM50BQ9Y247 325 aa14.01□□□□□ -0.17
VPS9D1-207ENST00000568691 PLIN4Q96Q06 1357 aa14□□□□□ -0.17
VPS9D1-207ENST00000568691 STXBP3O00186 592 aa14□□□□□ -0.17
VPS9D1-207ENST00000568691 KPNA6O60684 536 aa14□□□□□ -0.17
VPS9D1-207ENST00000568691 PPP2R5BQ15173 497 aa14□□□□□ -0.17
VPS9D1-207ENST00000568691 CCDC62Q6P9F0 684 aa14□□□□□ -0.17
VPS9D1-207ENST00000568691 FAM160B2Q86V87 743 aa14□□□□□ -0.17
VPS9D1-207ENST00000568691 FBXO11Q86XK2 927 aa14□□□□□ -0.17
VPS9D1-207ENST00000568691 MYOCDQ8IZQ8 938 aa14□□□□□ -0.17
VPS9D1-207ENST00000568691 DBF4BQ8NFT6 615 aa14□□□□□ -0.17
VPS9D1-207ENST00000568691 AFG1LQ8WV93 481 aa14□□□□□ -0.17
VPS9D1-207ENST00000568691 CLEC4DQ8WXI8 215 aa14□□□□□ -0.17
VPS9D1-207ENST00000568691 MSLNLQ96KJ4 702 aa14□□□□□ -0.17
VPS9D1-207ENST00000568691 TBC1D32Q96NH3 1257 aa14□□□□□ -0.17
VPS9D1-207ENST00000568691 PRRX2Q99811 253 aa14□□□□□ -0.17
VPS9D1-207ENST00000568691 HDAC6Q9UBN7 1215 aa14□□□□□ -0.17
VPS9D1-207ENST00000568691 GTF2IRD1Q9UHL9 959 aa14□□□□□ -0.17
VPS9D1-207ENST00000568691 MICAL3Q7RTP6 2002 aa14□□□□□ -0.17
VPS9D1-207ENST00000568691 DNAH14Q0VDD8 3507 aa13.99□□□□□ -0.17
VPS9D1-207ENST00000568691 EPG5Q9HCE0 2579 aa13.99□□□□□ -0.17
VPS9D1-207ENST00000568691 WDR87Q6ZQQ6 2873 aa13.99□□□□□ -0.17
VPS9D1-207ENST00000568691 MINDY4BA8MYZ0 360 aa13.99□□□□□ -0.17
VPS9D1-207ENST00000568691 LOC730098B7Z3J9 87 aa13.99□□□□□ -0.17
VPS9D1-207ENST00000568691 NKRFO15226 690 aaKnown RBP eCLIP13.99□□□□□ -0.17
VPS9D1-207ENST00000568691 GRM6O15303 877 aa13.99□□□□□ -0.17
VPS9D1-207ENST00000568691 EPB41L2O43491 1005 aaKnown RBP13.99□□□□□ -0.17
VPS9D1-207ENST00000568691 EFCAB14O75071 495 aa13.99□□□□□ -0.17
VPS9D1-207ENST00000568691 MMP3P08254 477 aa13.99□□□□□ -0.17
VPS9D1-207ENST00000568691 SMAD4Q13485 552 aaKnown RBP13.99□□□□□ -0.17
VPS9D1-207ENST00000568691 CBX2Q14781 532 aaPredicted RBP13.99□□□□□ -0.17
VPS9D1-207ENST00000568691 CCDC155Q8N6L0 562 aa13.99□□□□□ -0.17
VPS9D1-207ENST00000568691 NEDD1Q8NHV4 660 aa13.99□□□□□ -0.17
VPS9D1-207ENST00000568691 CHURC1Q8WUH1 139 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms