RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 CHST3Q7LGC8 479 aa18.68■□□□□ 0.58
CLN3-229ENST00000567963 DEFB128Q7Z7B8 93 aa18.68■□□□□ 0.58
CLN3-229ENST00000567963 RALYLQ86SE5 291 aaKnown RBP18.68■□□□□ 0.58
CLN3-229ENST00000567963 SCN5AQ14524 2016 aa18.68■□□□□ 0.58
CLN3-229ENST00000567963 CHD7Q9P2D1 2997 aa18.67■□□□□ 0.58
CLN3-229ENST00000567963 IQCF3P0C7M6 154 aa18.67■□□□□ 0.58
CLN3-229ENST00000567963 CASTP20810 708 aaKnown RBP18.67■□□□□ 0.58
CLN3-229ENST00000567963 CHMP4BP1P59074 171 aa18.67■□□□□ 0.58
CLN3-229ENST00000567963 TROAPQ12815 778 aa18.67■□□□□ 0.58
CLN3-229ENST00000567963 WTAPQ15007 396 aa18.67■□□□□ 0.58
CLN3-229ENST00000567963 DGKDQ16760 1214 aa18.67■□□□□ 0.58
CLN3-229ENST00000567963 HOMER1Q86YM7 354 aa18.67■□□□□ 0.58
CLN3-229ENST00000567963 KAT2BQ92831 832 aa18.67■□□□□ 0.58
CLN3-229ENST00000567963 MAP4K1Q92918 833 aa18.67■□□□□ 0.58
CLN3-229ENST00000567963 EMID1Q96A84 441 aaPredicted RBP18.67■□□□□ 0.58
CLN3-229ENST00000567963 PIGSQ96S52 555 aa18.67■□□□□ 0.58
CLN3-229ENST00000567963 GAS2L1Q99501 681 aaPredicted RBP18.67■□□□□ 0.58
CLN3-229ENST00000567963 PDCD2LQ9BRP1 358 aa18.67■□□□□ 0.58
CLN3-229ENST00000567963 NKX2-4Q9H2Z4 354 aa18.67■□□□□ 0.58
CLN3-229ENST00000567963 PRDM12Q9H4Q4 367 aa18.67■□□□□ 0.58
CLN3-229ENST00000567963 SLC28A3Q9HAS3 691 aa18.67■□□□□ 0.58
CLN3-229ENST00000567963 YBX2Q9Y2T7 364 aaKnown RBP18.67■□□□□ 0.58
CLN3-229ENST00000567963 SPTBN5Q9NRC6 3674 aaKnown RBP18.67■□□□□ 0.58
CLN3-229ENST00000567963 CUL9Q8IWT3 2517 aa18.67■□□□□ 0.58
CLN3-229ENST00000567963 ZBBXA8MT70 800 aa18.66■□□□□ 0.58
CLN3-229ENST00000567963 CYTH3O43739 400 aa18.66■□□□□ 0.58
CLN3-229ENST00000567963 HOXA13P31271 388 aaPredicted RBP18.66■□□□□ 0.58
CLN3-229ENST00000567963 RFC2P35250 354 aa18.66■□□□□ 0.58
CLN3-229ENST00000567963 TRAF1Q13077 416 aa18.66■□□□□ 0.58
CLN3-229ENST00000567963 BFSP2Q13515 415 aa18.66■□□□□ 0.58
CLN3-229ENST00000567963 SART3Q15020 963 aaKnown RBP18.66■□□□□ 0.58
CLN3-229ENST00000567963 PTGISQ16647 500 aa18.66■□□□□ 0.58
CLN3-229ENST00000567963 SESTD1Q86VW0 696 aa18.66■□□□□ 0.58
CLN3-229ENST00000567963 RETREG2Q8NC44 543 aa18.66■□□□□ 0.58
CLN3-229ENST00000567963 NOD1Q9Y239 953 aa18.66■□□□□ 0.58
CLN3-229ENST00000567963 MRVI1Q9Y6F6 885 aa18.66■□□□□ 0.58
CLN3-229ENST00000567963 MYH7BA7E2Y1 1941 aa18.66■□□□□ 0.58
CLN3-229ENST00000567963 BAZ2BQ9UIF8 2168 aaKnown RBP18.66■□□□□ 0.58
CLN3-229ENST00000567963 RGS20O76081 388 aa18.65■□□□□ 0.58
CLN3-229ENST00000567963 MYCLP12524 364 aaPredicted RBP18.65■□□□□ 0.58
CLN3-229ENST00000567963 RABGGTBP53611 331 aa18.65■□□□□ 0.58
CLN3-229ENST00000567963 LAMC2Q13753 1193 aa18.65■□□□□ 0.58
CLN3-229ENST00000567963 VSIG10LQ86VR7 867 aa18.65■□□□□ 0.58
CLN3-229ENST00000567963 IGDCC4Q8TDY8 1250 aa18.65■□□□□ 0.58
CLN3-229ENST00000567963 MYO9BQ13459 2157 aa18.65■□□□□ 0.58
CLN3-229ENST00000567963 TRIP12Q14669 1992 aaPredicted RBP18.65■□□□□ 0.58
CLN3-229ENST00000567963 PNMA6FA0A0J9YX94 578 aa18.65■□□□□ 0.58
CLN3-229ENST00000567963 ATP2A2P16615 1042 aaKnown RBP18.65■□□□□ 0.58
CLN3-229ENST00000567963 ANTXR2P58335 489 aa18.65■□□□□ 0.58
CLN3-229ENST00000567963 PGM5Q15124 567 aa18.65■□□□□ 0.58
CLN3-229ENST00000567963 TMEM67Q5HYA8 995 aa18.65■□□□□ 0.58
CLN3-229ENST00000567963 GDF6Q6KF10 455 aaPredicted RBP18.65■□□□□ 0.58
CLN3-229ENST00000567963 KCNV1Q6PIU1 500 aa18.65■□□□□ 0.58
CLN3-229ENST00000567963 DHX37Q8IY37 1157 aaKnown RBP18.65■□□□□ 0.58
CLN3-229ENST00000567963 USP38Q8NB14 1042 aa18.65■□□□□ 0.58
CLN3-229ENST00000567963 PPTC7Q8NI37 304 aa18.65■□□□□ 0.58
CLN3-229ENST00000567963 CTAGE1Q96RT6 745 aa18.65■□□□□ 0.58
CLN3-229ENST00000567963 PCDHA11Q9Y5I1 949 aa18.65■□□□□ 0.58
CLN3-229ENST00000567963 GCOM1H8Y6P7 765 aaPredicted RBP18.64■□□□□ 0.57
CLN3-229ENST00000567963 POLR2MP0CAP2 368 aa18.64■□□□□ 0.57
CLN3-229ENST00000567963 ACTN1P12814 892 aa18.64■□□□□ 0.57
CLN3-229ENST00000567963 MYOGP15173 224 aa18.64■□□□□ 0.57
CLN3-229ENST00000567963 CATIPQ7Z7H3 387 aa18.64■□□□□ 0.57
CLN3-229ENST00000567963 MB21D2Q8IYB1 491 aaPredicted RBP18.64■□□□□ 0.57
CLN3-229ENST00000567963 CAGE1Q8TC20 777 aa18.64■□□□□ 0.57
CLN3-229ENST00000567963 RBM8AQ9Y5S9 174 aaKnown RBP18.64■□□□□ 0.57
CLN3-229ENST00000567963 ADGRE1Q14246 886 aa18.63■□□□□ 0.57
CLN3-229ENST00000567963 MYSM1Q5VVJ2 828 aa18.63■□□□□ 0.57
CLN3-229ENST00000567963 KATNAL1Q9BW62 490 aa18.63■□□□□ 0.57
CLN3-229ENST00000567963 GTF2IRD1Q9UHL9 959 aa18.63■□□□□ 0.57
CLN3-229ENST00000567963 TANC1Q9C0D5 1861 aa18.63■□□□□ 0.57
CLN3-229ENST00000567963 PPFIA4O75335 1185 aa18.62■□□□□ 0.57
CLN3-229ENST00000567963 TGFB3P10600 412 aa18.62■□□□□ 0.57
CLN3-229ENST00000567963 PSEN2P49810 448 aa18.62■□□□□ 0.57
CLN3-229ENST00000567963 SP2Q02086 613 aa18.62■□□□□ 0.57
CLN3-229ENST00000567963 CELF3Q5SZQ8 465 aaKnown RBP18.62■□□□□ 0.57
CLN3-229ENST00000567963 FCHSD1Q86WN1 690 aa18.62■□□□□ 0.57
CLN3-229ENST00000567963 CCDC155Q8N6L0 562 aa18.62■□□□□ 0.57
CLN3-229ENST00000567963 C7orf31Q8N865 590 aa18.62■□□□□ 0.57
CLN3-229ENST00000567963 IL31RAQ8NI17 732 aa18.62■□□□□ 0.57
CLN3-229ENST00000567963 AFAP1L1Q8TED9 768 aa18.62■□□□□ 0.57
CLN3-229ENST00000567963 MAP3K14Q99558 947 aa18.62■□□□□ 0.57
CLN3-229ENST00000567963 FTOQ9C0B1 505 aaKnown RBP eCLIP18.62■□□□□ 0.57
CLN3-229ENST00000567963 HDAC6Q9UBN7 1215 aa18.62■□□□□ 0.57
CLN3-229ENST00000567963 TET1Q8NFU7 2136 aa18.61■□□□□ 0.57
CLN3-229ENST00000567963 HAS3O00219 553 aa18.61■□□□□ 0.57
CLN3-229ENST00000567963 F2P00734 622 aa18.61■□□□□ 0.57
CLN3-229ENST00000567963 HOXD8P13378 290 aaPredicted RBP18.61■□□□□ 0.57
CLN3-229ENST00000567963 CCND2P30279 289 aa18.61■□□□□ 0.57
CLN3-229ENST00000567963 MFSD10Q14728 455 aa18.61■□□□□ 0.57
CLN3-229ENST00000567963 KIAA0753Q2KHM9 967 aa18.61■□□□□ 0.57
CLN3-229ENST00000567963 HSDL1Q3SXM5 330 aa18.61■□□□□ 0.57
CLN3-229ENST00000567963 PPP2R2DQ66LE6 453 aa18.61■□□□□ 0.57
CLN3-229ENST00000567963 PHOSPHO2Q8TCD6 241 aa18.61■□□□□ 0.57
CLN3-229ENST00000567963 ALG1Q9BT22 464 aa18.61■□□□□ 0.57
CLN3-229ENST00000567963 LY9Q9HBG7 655 aa18.61■□□□□ 0.57
CLN3-229ENST00000567963 GGPS1O95749 300 aa18.6■□□□□ 0.57
CLN3-229ENST00000567963 ZNF286BP0CG31 522 aa18.6■□□□□ 0.57
CLN3-229ENST00000567963 GPNMBQ14956 572 aa18.6■□□□□ 0.57
CLN3-229ENST00000567963 PPM1EQ8WY54 764 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms