RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 PTH1RQ03431 593 aa19.92■□□□□ 0.78
CLN3-216ENST00000565316 SLC35G1Q2M3R5 365 aa19.92■□□□□ 0.78
CLN3-216ENST00000565316 STOX1Q6ZVD7 989 aa19.92■□□□□ 0.78
CLN3-216ENST00000565316 RUFY2Q8WXA3 655 aa19.92■□□□□ 0.78
CLN3-216ENST00000565316 CTAGE1Q96RT6 745 aa19.92■□□□□ 0.78
CLN3-216ENST00000565316 U3KPZ7 1027 aaPredicted RBP19.92■□□□□ 0.78
CLN3-216ENST00000565316 ZBBXA8MT70 800 aa19.91■□□□□ 0.78
CLN3-216ENST00000565316 CASTP20810 708 aaKnown RBP19.91■□□□□ 0.78
CLN3-216ENST00000565316 TRDNQ13061 729 aa19.91■□□□□ 0.78
CLN3-216ENST00000565316 BFSP2Q13515 415 aa19.91■□□□□ 0.78
CLN3-216ENST00000565316 GRM4Q14833 912 aa19.91■□□□□ 0.78
CLN3-216ENST00000565316 DEFB128Q7Z7B8 93 aa19.91■□□□□ 0.78
CLN3-216ENST00000565316 RETREG2Q8NC44 543 aa19.91■□□□□ 0.78
CLN3-216ENST00000565316 RIOX1Q9H6W3 641 aa19.91■□□□□ 0.78
CLN3-216ENST00000565316 PCDHA1Q9Y5I3 950 aa19.91■□□□□ 0.78
CLN3-216ENST00000565316 MYO9BQ13459 2157 aa19.9■□□□□ 0.78
CLN3-216ENST00000565316 LAMC2Q13753 1193 aa19.9■□□□□ 0.78
CLN3-216ENST00000565316 PTGISQ16647 500 aa19.9■□□□□ 0.78
CLN3-216ENST00000565316 DGKDQ16760 1214 aa19.9■□□□□ 0.78
CLN3-216ENST00000565316 PDCD2LQ9BRP1 358 aa19.9■□□□□ 0.78
CLN3-216ENST00000565316 KIAA1217Q5T5P2 1943 aa19.89■□□□□ 0.77
CLN3-216ENST00000565316 RGS20O76081 388 aa19.89■□□□□ 0.77
CLN3-216ENST00000565316 ACTN1P12814 892 aa19.89■□□□□ 0.77
CLN3-216ENST00000565316 HOXD8P13378 290 aaPredicted RBP19.89■□□□□ 0.77
CLN3-216ENST00000565316 MYOGP15173 224 aa19.89■□□□□ 0.77
CLN3-216ENST00000565316 TROAPQ12815 778 aa19.89■□□□□ 0.77
CLN3-216ENST00000565316 GDF6Q6KF10 455 aaPredicted RBP19.89■□□□□ 0.77
CLN3-216ENST00000565316 CHST3Q7LGC8 479 aa19.89■□□□□ 0.77
CLN3-216ENST00000565316 VSIG10LQ86VR7 867 aa19.89■□□□□ 0.77
CLN3-216ENST00000565316 PPTC7Q8NI37 304 aa19.89■□□□□ 0.77
CLN3-216ENST00000565316 CAGE1Q8TC20 777 aa19.89■□□□□ 0.77
CLN3-216ENST00000565316 PHOSPHO2Q8TCD6 241 aa19.89■□□□□ 0.77
CLN3-216ENST00000565316 SENP2Q9HC62 589 aa19.89■□□□□ 0.77
CLN3-216ENST00000565316 NOD1Q9Y239 953 aa19.89■□□□□ 0.77
CLN3-216ENST00000565316 MRVI1Q9Y6F6 885 aa19.89■□□□□ 0.77
CLN3-216ENST00000565316 TAF6LQ9Y6J9 622 aa19.89■□□□□ 0.77
CLN3-216ENST00000565316 IFIT3O14879 490 aaKnown RBP19.88■□□□□ 0.77
CLN3-216ENST00000565316 SGSM2O43147 1006 aa19.88■□□□□ 0.77
CLN3-216ENST00000565316 RBL2Q08999 1139 aa19.88■□□□□ 0.77
CLN3-216ENST00000565316 TRAF1Q13077 416 aa19.88■□□□□ 0.77
CLN3-216ENST00000565316 AFAP1L1Q8TED9 768 aa19.88■□□□□ 0.77
CLN3-216ENST00000565316 SYMPKQ92797 1274 aaKnown RBP19.88■□□□□ 0.77
CLN3-216ENST00000565316 GBF1Q92538 1859 aa19.88■□□□□ 0.77
CLN3-216ENST00000565316 MYH6P13533 1939 aa19.88■□□□□ 0.77
CLN3-216ENST00000565316 SCN5AQ14524 2016 aa19.88■□□□□ 0.77
CLN3-216ENST00000565316 E7EWF7 191 aa19.87■□□□□ 0.77
CLN3-216ENST00000565316 HAS3O00219 553 aa19.87■□□□□ 0.77
CLN3-216ENST00000565316 CYTH3O43739 400 aa19.87■□□□□ 0.77
CLN3-216ENST00000565316 F2P00734 622 aa19.87■□□□□ 0.77
CLN3-216ENST00000565316 CHMP4BP1P59074 171 aa19.87■□□□□ 0.77
CLN3-216ENST00000565316 GPNMBQ14956 572 aa19.87■□□□□ 0.77
CLN3-216ENST00000565316 TJAP1Q5JTD0 557 aa19.87■□□□□ 0.77
CLN3-216ENST00000565316 PPP2R2DQ66LE6 453 aa19.87■□□□□ 0.77
CLN3-216ENST00000565316 KCNV1Q6PIU1 500 aa19.87■□□□□ 0.77
CLN3-216ENST00000565316 CCDC155Q8N6L0 562 aa19.87■□□□□ 0.77
CLN3-216ENST00000565316 DHX38Q92620 1227 aaKnown RBP19.87■□□□□ 0.77
CLN3-216ENST00000565316 PIGSQ96S52 555 aa19.87■□□□□ 0.77
CLN3-216ENST00000565316 SLC9A7Q96T83 725 aa19.87■□□□□ 0.77
CLN3-216ENST00000565316 PRDM6Q9NQX0 595 aa19.87■□□□□ 0.77
CLN3-216ENST00000565316 GTF2IRD1Q9UHL9 959 aa19.87■□□□□ 0.77
CLN3-216ENST00000565316 PNMA6FA0A0J9YX94 578 aa19.86■□□□□ 0.77
CLN3-216ENST00000565316 HOXA13P31271 388 aaPredicted RBP19.86■□□□□ 0.77
CLN3-216ENST00000565316 PSEN2P49810 448 aa19.86■□□□□ 0.77
CLN3-216ENST00000565316 WTAPQ15007 396 aa19.86■□□□□ 0.77
CLN3-216ENST00000565316 PGM5Q15124 567 aa19.86■□□□□ 0.77
CLN3-216ENST00000565316 TMEM67Q5HYA8 995 aa19.86■□□□□ 0.77
CLN3-216ENST00000565316 MYSM1Q5VVJ2 828 aa19.86■□□□□ 0.77
CLN3-216ENST00000565316 RALYLQ86SE5 291 aaKnown RBP19.86■□□□□ 0.77
CLN3-216ENST00000565316 DHX37Q8IY37 1157 aaKnown RBP19.86■□□□□ 0.77
CLN3-216ENST00000565316 NCOA7Q8NI08 942 aa19.86■□□□□ 0.77
CLN3-216ENST00000565316 IL31RAQ8NI17 732 aa19.86■□□□□ 0.77
CLN3-216ENST00000565316 MAP4K1Q92918 833 aa19.86■□□□□ 0.77
CLN3-216ENST00000565316 KATNAL1Q9BW62 490 aa19.86■□□□□ 0.77
CLN3-216ENST00000565316 FTOQ9C0B1 505 aaKnown RBP eCLIP19.86■□□□□ 0.77
CLN3-216ENST00000565316 HDAC6Q9UBN7 1215 aa19.86■□□□□ 0.77
CLN3-216ENST00000565316 TANC1Q9C0D5 1861 aa19.86■□□□□ 0.77
CLN3-216ENST00000565316 ERICH2A1L162 156 aa19.85■□□□□ 0.77
CLN3-216ENST00000565316 GCOM1H8Y6P7 765 aaPredicted RBP19.85■□□□□ 0.77
CLN3-216ENST00000565316 PPFIA4O75335 1185 aa19.85■□□□□ 0.77
CLN3-216ENST00000565316 BAIAP3O94812 1187 aa19.85■□□□□ 0.77
CLN3-216ENST00000565316 POLR2MP0CAP2 368 aa19.85■□□□□ 0.77
CLN3-216ENST00000565316 TGFB3P10600 412 aa19.85■□□□□ 0.77
CLN3-216ENST00000565316 MYCLP12524 364 aaPredicted RBP19.85■□□□□ 0.77
CLN3-216ENST00000565316 SELPP16109 830 aa19.85■□□□□ 0.77
CLN3-216ENST00000565316 IGFBP4P22692 258 aa19.85■□□□□ 0.77
CLN3-216ENST00000565316 ANTXR2P58335 489 aa19.85■□□□□ 0.77
CLN3-216ENST00000565316 SART3Q15020 963 aaKnown RBP19.85■□□□□ 0.77
CLN3-216ENST00000565316 CELF3Q5SZQ8 465 aaKnown RBP19.85■□□□□ 0.77
CLN3-216ENST00000565316 HOMER1Q86YM7 354 aa19.85■□□□□ 0.77
CLN3-216ENST00000565316 IGDCC4Q8TDY8 1250 aa19.85■□□□□ 0.77
CLN3-216ENST00000565316 ATXN2LQ8WWM7 1075 aaKnown RBP19.85■□□□□ 0.77
CLN3-216ENST00000565316 BDP1A6H8Y1 2624 aa19.85■□□□□ 0.77
CLN3-216ENST00000565316 PARNO95453 639 aaKnown RBP19.84■□□□□ 0.77
CLN3-216ENST00000565316 CXCL10P02778 98 aa19.84■□□□□ 0.77
CLN3-216ENST00000565316 CA3P07451 260 aa19.84■□□□□ 0.77
CLN3-216ENST00000565316 SP2Q02086 613 aa19.84■□□□□ 0.77
CLN3-216ENST00000565316 MFSD10Q14728 455 aa19.84■□□□□ 0.77
CLN3-216ENST00000565316 HERC6Q8IVU3 1022 aa19.84■□□□□ 0.77
CLN3-216ENST00000565316 MB21D2Q8IYB1 491 aaPredicted RBP19.84■□□□□ 0.77
CLN3-216ENST00000565316 C7orf31Q8N865 590 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms