RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 CIITAP33076 1130 aa23.48■■□□□ 1.35
CLN3-212ENST00000564574 UBXN2AP68543 259 aa23.48■■□□□ 1.35
CLN3-212ENST00000564574 PDE4DQ08499 809 aa23.48■■□□□ 1.35
CLN3-212ENST00000564574 ORC2Q13416 577 aaPredicted RBP23.48■■□□□ 1.35
CLN3-212ENST00000564574 STXBP2Q15833 593 aa23.48■■□□□ 1.35
CLN3-212ENST00000564574 VSIG10LQ86VR7 867 aa23.48■■□□□ 1.35
CLN3-212ENST00000564574 SYNGAP1Q96PV0 1343 aa23.48■■□□□ 1.35
CLN3-212ENST00000564574 MYCLP12524 364 aaPredicted RBP23.47■■□□□ 1.35
CLN3-212ENST00000564574 IL31RAQ8NI17 732 aa23.47■■□□□ 1.35
CLN3-212ENST00000564574 CYP3A7-CYP3A51PA0A087WV96 503 aa23.46■■□□□ 1.35
CLN3-212ENST00000564574 CYP3A7P24462 503 aa23.46■■□□□ 1.35
CLN3-212ENST00000564574 ZNF76P36508 570 aa23.46■■□□□ 1.35
CLN3-212ENST00000564574 LETM2Q2VYF4 491 aa23.46■■□□□ 1.35
CLN3-212ENST00000564574 TTC38Q5R3I4 469 aa23.46■■□□□ 1.35
CLN3-212ENST00000564574 ATL3Q6DD88 541 aa23.46■■□□□ 1.35
CLN3-212ENST00000564574 PPP4R3AQ6IN85 833 aa23.46■■□□□ 1.35
CLN3-212ENST00000564574 ARMCX2Q7L311 632 aa23.46■■□□□ 1.35
CLN3-212ENST00000564574 OTOP1Q7RTM1 612 aa23.46■■□□□ 1.35
CLN3-212ENST00000564574 ZNF396Q96N95 335 aaPredicted RBP23.46■■□□□ 1.35
CLN3-212ENST00000564574 TINF2Q9BSI4 451 aa23.46■■□□□ 1.35
CLN3-212ENST00000564574 EDIL3O43854 480 aa23.45■■□□□ 1.34
CLN3-212ENST00000564574 EIF3JO75822 258 aaKnown RBP23.45■■□□□ 1.34
CLN3-212ENST00000564574 TOB1P50616 345 aaPredicted RBP23.45■■□□□ 1.34
CLN3-212ENST00000564574 NIPA1Q7RTP0 329 aa23.45■■□□□ 1.34
CLN3-212ENST00000564574 MBOAT7Q96N66 472 aa23.45■■□□□ 1.34
CLN3-212ENST00000564574 TRIM17Q9Y577 477 aa23.45■■□□□ 1.34
CLN3-212ENST00000564574 UBIAD1Q9Y5Z9 338 aa23.45■■□□□ 1.34
CLN3-212ENST00000564574 CCNT1O60563 726 aaKnown RBP23.44■■□□□ 1.34
CLN3-212ENST00000564574 IGHA2P01877 340 aa23.44■■□□□ 1.34
CLN3-212ENST00000564574 MRPS9P82933 396 aaKnown RBP23.44■■□□□ 1.34
CLN3-212ENST00000564574 CEP55Q53EZ4 464 aa23.44■■□□□ 1.34
CLN3-212ENST00000564574 NLRX1Q86UT6 975 aa23.44■■□□□ 1.34
CLN3-212ENST00000564574 RAET1EQ8TD07 263 aa23.44■■□□□ 1.34
CLN3-212ENST00000564574 MXRA8Q9BRK3 442 aa23.44■■□□□ 1.34
CLN3-212ENST00000564574 ATP2B1P20020 1258 aa23.43■■□□□ 1.34
CLN3-212ENST00000564574 SETQ01105 290 aaPredicted RBP23.43■■□□□ 1.34
CLN3-212ENST00000564574 GNPTABQ3T906 1256 aa23.43■■□□□ 1.34
CLN3-212ENST00000564574 Q4G0T1 1027 aa23.43■■□□□ 1.34
CLN3-212ENST00000564574 PXYLP1Q8TE99 480 aa23.43■■□□□ 1.34
CLN3-212ENST00000564574 GPRASP2Q96D09 838 aa23.43■■□□□ 1.34
CLN3-212ENST00000564574 INPP4AQ96PE3 977 aaPredicted RBP23.43■■□□□ 1.34
CLN3-212ENST00000564574 VTA1Q9NP79 307 aa23.43■■□□□ 1.34
CLN3-212ENST00000564574 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.43■■□□□ 1.34
CLN3-212ENST00000564574 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.43■■□□□ 1.34
CLN3-212ENST00000564574 FLRT1Q9NZU1 646 aa23.43■■□□□ 1.34
CLN3-212ENST00000564574 TCHHQ07283 1943 aa23.42■■□□□ 1.34
CLN3-212ENST00000564574 MEIS1O00470 390 aa23.42■■□□□ 1.34
CLN3-212ENST00000564574 MAFGO15525 162 aa23.42■■□□□ 1.34
CLN3-212ENST00000564574 TDP2O95551 362 aa23.42■■□□□ 1.34
CLN3-212ENST00000564574 BMP15O95972 392 aa23.42■■□□□ 1.34
CLN3-212ENST00000564574 CCL14Q16627 93 aa23.42■■□□□ 1.34
CLN3-212ENST00000564574 FAM173BQ6P4H8 233 aa23.42■■□□□ 1.34
CLN3-212ENST00000564574 CDHR1Q96JP9 859 aa23.42■■□□□ 1.34
CLN3-212ENST00000564574 ABHD16BQ9H3Z7 469 aa23.42■■□□□ 1.34
CLN3-212ENST00000564574 JADE2Q9NQC1 790 aa23.42■■□□□ 1.34
CLN3-212ENST00000564574 DDX25Q9UHL0 483 aaKnown RBP23.42■■□□□ 1.34
CLN3-212ENST00000564574 NRBP1Q9UHY1 535 aa23.42■■□□□ 1.34
CLN3-212ENST00000564574 IGLV3-22A0A075B6J6 115 aa23.41■■□□□ 1.34
CLN3-212ENST00000564574 FAM86B1E9PN63 330 aa23.41■■□□□ 1.34
CLN3-212ENST00000564574 ADCY3O60266 1144 aa23.41■■□□□ 1.34
CLN3-212ENST00000564574 SNAI1O95863 264 aaPredicted RBP23.41■■□□□ 1.34
CLN3-212ENST00000564574 FAM86B2P0C5J1 330 aa23.41■■□□□ 1.34
CLN3-212ENST00000564574 MFSD14CQ5VZR4 134 aa23.41■■□□□ 1.34
CLN3-212ENST00000564574 PLA2G4DQ86XP0 818 aa23.41■■□□□ 1.34
CLN3-212ENST00000564574 SLAIN1Q8ND83 568 aa23.41■■□□□ 1.34
CLN3-212ENST00000564574 TRIB2Q92519 343 aa23.41■■□□□ 1.34
CLN3-212ENST00000564574 RTEL1Q9NZ71 1219 aa23.41■■□□□ 1.34
CLN3-212ENST00000564574 CFAP45Q9UL16 551 aa23.41■■□□□ 1.34
CLN3-212ENST00000564574 CEP131Q9UPN4 1083 aa23.41■■□□□ 1.34
CLN3-212ENST00000564574 CNPY2Q9Y2B0 182 aa23.41■■□□□ 1.34
CLN3-212ENST00000564574 PCDHB6Q9Y5E3 794 aa23.41■■□□□ 1.34
CLN3-212ENST00000564574 NEMFO60524 1076 aa23.4■■□□□ 1.34
CLN3-212ENST00000564574 ITGB5P18084 799 aa23.4■■□□□ 1.34
CLN3-212ENST00000564574 ICAM3P32942 547 aa23.4■■□□□ 1.34
CLN3-212ENST00000564574 ZNF174Q15697 407 aa23.4■■□□□ 1.34
CLN3-212ENST00000564574 ANO1Q5XXA6 986 aa23.4■■□□□ 1.34
CLN3-212ENST00000564574 KCNV1Q6PIU1 500 aa23.4■■□□□ 1.34
CLN3-212ENST00000564574 CTU1Q7Z7A3 348 aaKnown RBP23.4■■□□□ 1.34
CLN3-212ENST00000564574 POLR3EQ9NVU0 708 aa23.4■■□□□ 1.34
CLN3-212ENST00000564574 PTPN22Q9Y2R2 807 aa23.4■■□□□ 1.34
CLN3-212ENST00000564574 LAD1O00515 517 aa23.39■■□□□ 1.33
CLN3-212ENST00000564574 WNT7AO00755 349 aa23.39■■□□□ 1.33
CLN3-212ENST00000564574 TBX3O15119 743 aa23.39■■□□□ 1.33
CLN3-212ENST00000564574 FIBPO43427 364 aa23.39■■□□□ 1.33
CLN3-212ENST00000564574 MCM7P33993 719 aa23.39■■□□□ 1.33
CLN3-212ENST00000564574 KRT85P78386 507 aa23.39■■□□□ 1.33
CLN3-212ENST00000564574 MTMR1Q13613 665 aa23.39■■□□□ 1.33
CLN3-212ENST00000564574 NBR1Q14596 966 aa23.39■■□□□ 1.33
CLN3-212ENST00000564574 PRR16Q569H4 304 aa23.39■■□□□ 1.33
CLN3-212ENST00000564574 LENG9Q96B70 501 aa23.39■■□□□ 1.33
CLN3-212ENST00000564574 USP28Q96RU2 1077 aa23.39■■□□□ 1.33
CLN3-212ENST00000564574 KATNBL1Q9H079 304 aa23.39■■□□□ 1.33
CLN3-212ENST00000564574 RBM47A0AV96 593 aaKnown RBP23.38■■□□□ 1.33
CLN3-212ENST00000564574 RGS20O76081 388 aa23.38■■□□□ 1.33
CLN3-212ENST00000564574 HMGCRP04035 888 aa23.38■■□□□ 1.33
CLN3-212ENST00000564574 TGFB3P10600 412 aa23.38■■□□□ 1.33
CLN3-212ENST00000564574 NASPP49321 788 aaPredicted RBP23.38■■□□□ 1.33
CLN3-212ENST00000564574 DNM1Q05193 864 aaKnown RBP23.38■■□□□ 1.33
CLN3-212ENST00000564574 ACVR2BQ13705 512 aa23.38■■□□□ 1.33
CLN3-212ENST00000564574 SF3A1Q15459 793 aaKnown RBP23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms