RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 PDCD2LQ9BRP1 358 aa20.47■□□□□ 0.87
NME3-205ENST00000563854 LRRC2Q9BYS8 371 aa20.47■□□□□ 0.87
NME3-205ENST00000563854 WNT8AQ9H1J5 351 aa20.47■□□□□ 0.87
NME3-205ENST00000563854 KIAA1217Q5T5P2 1943 aa20.47■□□□□ 0.87
NME3-205ENST00000563854 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.46■□□□□ 0.87
NME3-205ENST00000563854 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.46■□□□□ 0.87
NME3-205ENST00000563854 SH2B2O14492 632 aaPredicted RBP20.46■□□□□ 0.87
NME3-205ENST00000563854 DNAJB2P25686 324 aa20.46■□□□□ 0.87
NME3-205ENST00000563854 IL31RAQ8NI17 732 aa20.46■□□□□ 0.87
NME3-205ENST00000563854 RRP36Q96EU6 259 aaKnown RBP20.46■□□□□ 0.87
NME3-205ENST00000563854 TTYH1Q9H313 450 aaPredicted RBP20.46■□□□□ 0.87
NME3-205ENST00000563854 SEMA6BQ9H3T3 888 aa20.46■□□□□ 0.87
NME3-205ENST00000563854 NOD1Q9Y239 953 aa20.46■□□□□ 0.87
NME3-205ENST00000563854 BAZ2BQ9UIF8 2168 aaKnown RBP20.46■□□□□ 0.87
NME3-205ENST00000563854 GRXCR1A8MXD5 290 aa20.45■□□□□ 0.86
NME3-205ENST00000563854 GHRHRQ02643 423 aa20.45■□□□□ 0.86
NME3-205ENST00000563854 PGM5Q15124 567 aa20.45■□□□□ 0.86
NME3-205ENST00000563854 OTOP2Q7RTS6 562 aa20.45■□□□□ 0.86
NME3-205ENST00000563854 TMEM87BQ96K49 555 aa20.45■□□□□ 0.86
NME3-205ENST00000563854 CDX2Q99626 313 aaPredicted RBP20.45■□□□□ 0.86
NME3-205ENST00000563854 MAP3K20Q9NYL2 800 aaKnown RBP20.45■□□□□ 0.86
NME3-205ENST00000563854 SEC63Q9UGP8 760 aaKnown RBP20.45■□□□□ 0.86
NME3-205ENST00000563854 DDX41Q9UJV9 622 aaKnown RBP20.45■□□□□ 0.86
NME3-205ENST00000563854 PLEKHA8P1O95397 391 aa20.44■□□□□ 0.86
NME3-205ENST00000563854 FGBP02675 491 aa20.44■□□□□ 0.86
NME3-205ENST00000563854 CCND2P30279 289 aa20.44■□□□□ 0.86
NME3-205ENST00000563854 NECTIN1Q15223 517 aa20.44■□□□□ 0.86
NME3-205ENST00000563854 NFRKBQ6P4R8 1299 aa20.44■□□□□ 0.86
NME3-205ENST00000563854 DHX37Q8IY37 1157 aaKnown RBP20.44■□□□□ 0.86
NME3-205ENST00000563854 CMTR1Q8N1G2 835 aaKnown RBP20.44■□□□□ 0.86
NME3-205ENST00000563854 SAMD3Q8N6K7 520 aa20.44■□□□□ 0.86
NME3-205ENST00000563854 MYLIPQ8WY64 445 aa20.44■□□□□ 0.86
NME3-205ENST00000563854 SPZ1Q9BXG8 430 aa20.44■□□□□ 0.86
NME3-205ENST00000563854 MTIF3Q9H2K0 278 aaKnown RBP20.44■□□□□ 0.86
NME3-205ENST00000563854 SCN10AQ9Y5Y9 1956 aa20.44■□□□□ 0.86
NME3-205ENST00000563854 CASTP20810 708 aaKnown RBP20.43■□□□□ 0.86
NME3-205ENST00000563854 DGKDQ16760 1214 aa20.43■□□□□ 0.86
NME3-205ENST00000563854 RNF20Q5VTR2 975 aa20.43■□□□□ 0.86
NME3-205ENST00000563854 DEFB128Q7Z7B8 93 aa20.43■□□□□ 0.86
NME3-205ENST00000563854 TMTC2Q8N394 836 aa20.43■□□□□ 0.86
NME3-205ENST00000563854 MAP3K14Q99558 947 aa20.43■□□□□ 0.86
NME3-205ENST00000563854 SLC12A7Q9Y666 1083 aa20.43■□□□□ 0.86
NME3-205ENST00000563854 ZBBXA8MT70 800 aa20.42■□□□□ 0.86
NME3-205ENST00000563854 CDC45O75419 566 aa20.42■□□□□ 0.86
NME3-205ENST00000563854 ZNF286BP0CG31 522 aa20.42■□□□□ 0.86
NME3-205ENST00000563854 PBX2P40425 430 aa20.42■□□□□ 0.86
NME3-205ENST00000563854 GNAQP50148 359 aa20.42■□□□□ 0.86
NME3-205ENST00000563854 LAMC2Q13753 1193 aa20.42■□□□□ 0.86
NME3-205ENST00000563854 SMARCC2Q8TAQ2 1214 aa20.42■□□□□ 0.86
NME3-205ENST00000563854 HERVK_113Q902F9 699 aa20.42■□□□□ 0.86
NME3-205ENST00000563854 TIFAQ96CG3 184 aa20.42■□□□□ 0.86
NME3-205ENST00000563854 CCDC136Q96JN2 1154 aa20.42■□□□□ 0.86
NME3-205ENST00000563854 ALG1Q9BT22 464 aa20.42■□□□□ 0.86
NME3-205ENST00000563854 MTA3Q9BTC8 594 aa20.42■□□□□ 0.86
NME3-205ENST00000563854 CXXC1Q9P0U4 656 aaPredicted RBP20.42■□□□□ 0.86
NME3-205ENST00000563854 RGS20O76081 388 aa20.41■□□□□ 0.86
NME3-205ENST00000563854 GGPS1O95749 300 aa20.41■□□□□ 0.86
NME3-205ENST00000563854 CALM1P0DP23 149 aa20.41■□□□□ 0.86
NME3-205ENST00000563854 CALM2P0DP24 149 aa20.41■□□□□ 0.86
NME3-205ENST00000563854 CALM3P0DP25 149 aa20.41■□□□□ 0.86
NME3-205ENST00000563854 PTPN11Q06124 597 aaPredicted RBP20.41■□□□□ 0.86
NME3-205ENST00000563854 RASIP1Q5U651 963 aa20.41■□□□□ 0.86
NME3-205ENST00000563854 VSIG10LQ86VR7 867 aa20.41■□□□□ 0.86
NME3-205ENST00000563854 MICU3Q86XE3 530 aa20.41■□□□□ 0.86
NME3-205ENST00000563854 RPUSD2Q8IZ73 545 aaKnown RBP20.41■□□□□ 0.86
NME3-205ENST00000563854 CCDC82Q8N4S0 544 aa20.41■□□□□ 0.86
NME3-205ENST00000563854 SRBD1Q8N5C6 995 aaKnown RBP20.41■□□□□ 0.86
NME3-205ENST00000563854 RETREG2Q8NC44 543 aa20.41■□□□□ 0.86
NME3-205ENST00000563854 GPKOWQ92917 476 aaPredicted RBP eCLIP20.41■□□□□ 0.86
NME3-205ENST00000563854 CUL5Q93034 780 aa20.41■□□□□ 0.86
NME3-205ENST00000563854 SPATA33Q96N06 139 aa20.41■□□□□ 0.86
NME3-205ENST00000563854 LZTS2Q9BRK4 669 aa20.41■□□□□ 0.86
NME3-205ENST00000563854 TMEM265A0A087WTH1 108 aa20.4■□□□□ 0.86
NME3-205ENST00000563854 hCG_1642624A0A1W2PR95 340 aa20.4■□□□□ 0.86
NME3-205ENST00000563854 FOSL2P15408 326 aa20.4■□□□□ 0.86
NME3-205ENST00000563854 UBA1P22314 1058 aaKnown RBP20.4■□□□□ 0.86
NME3-205ENST00000563854 PTGISQ16647 500 aa20.4■□□□□ 0.86
NME3-205ENST00000563854 KCNV1Q6PIU1 500 aa20.4■□□□□ 0.86
NME3-205ENST00000563854 USP17L6PQ6QN14 398 aa20.4■□□□□ 0.86
NME3-205ENST00000563854 PPTC7Q8NI37 304 aa20.4■□□□□ 0.86
NME3-205ENST00000563854 KAT2BQ92831 832 aa20.4■□□□□ 0.86
NME3-205ENST00000563854 EMID1Q96A84 441 aaPredicted RBP20.4■□□□□ 0.86
NME3-205ENST00000563854 TCEANC2Q96MN5 208 aa20.4■□□□□ 0.86
NME3-205ENST00000563854 PBX4Q9BYU1 374 aa20.4■□□□□ 0.86
NME3-205ENST00000563854 A0A0C4DFX4 3053 aa20.4■□□□□ 0.86
NME3-205ENST00000563854 LIFRP42702 1097 aa20.39■□□□□ 0.85
NME3-205ENST00000563854 PSEN2P49810 448 aa20.39■□□□□ 0.85
NME3-205ENST00000563854 BFSP2Q13515 415 aa20.39■□□□□ 0.85
NME3-205ENST00000563854 MFSD10Q14728 455 aa20.39■□□□□ 0.85
NME3-205ENST00000563854 GDF6Q6KF10 455 aaPredicted RBP20.39■□□□□ 0.85
NME3-205ENST00000563854 SYNE3Q6ZMZ3 975 aa20.39■□□□□ 0.85
NME3-205ENST00000563854 C7orf31Q8N865 590 aa20.39■□□□□ 0.85
NME3-205ENST00000563854 NEK1Q96PY6 1258 aa20.39■□□□□ 0.85
NME3-205ENST00000563854 KATNAL1Q9BW62 490 aa20.39■□□□□ 0.85
NME3-205ENST00000563854 MLXIPQ9HAP2 919 aa20.39■□□□□ 0.85
NME3-205ENST00000563854 RTEL1Q9NZ71 1219 aa20.39■□□□□ 0.85
NME3-205ENST00000563854 SP2Q02086 613 aa20.38■□□□□ 0.85
NME3-205ENST00000563854 GRIN2CQ14957 1233 aa20.38■□□□□ 0.85
NME3-205ENST00000563854 HSDL1Q3SXM5 330 aa20.38■□□□□ 0.85
NME3-205ENST00000563854 GNPTABQ3T906 1256 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms