RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 CCND2P30279 289 aa19.46■□□□□ 0.71
CLK3-210ENST00000563112 SMAD3P84022 425 aaKnown RBP19.46■□□□□ 0.71
CLK3-210ENST00000563112 KRT32Q14532 448 aa19.46■□□□□ 0.71
CLK3-210ENST00000563112 PGM5Q15124 567 aa19.46■□□□□ 0.71
CLK3-210ENST00000563112 NBPF20Q3BBV1 942 aa19.46■□□□□ 0.71
CLK3-210ENST00000563112 AFG1LQ8WV93 481 aa19.46■□□□□ 0.71
CLK3-210ENST00000563112 CUL5Q93034 780 aa19.46■□□□□ 0.71
CLK3-210ENST00000563112 LRRC2Q9BYS8 371 aa19.46■□□□□ 0.71
CLK3-210ENST00000563112 RXRAP19793 462 aa19.45■□□□□ 0.7
CLK3-210ENST00000563112 PTPN11Q06124 597 aaPredicted RBP19.45■□□□□ 0.7
CLK3-210ENST00000563112 ARHGAP1Q07960 439 aa19.45■□□□□ 0.7
CLK3-210ENST00000563112 LAMC2Q13753 1193 aa19.45■□□□□ 0.7
CLK3-210ENST00000563112 ZNF697Q5TEC3 545 aa19.45■□□□□ 0.7
CLK3-210ENST00000563112 NFRKBQ6P4R8 1299 aa19.45■□□□□ 0.7
CLK3-210ENST00000563112 PSRC1Q6PGN9 363 aaPredicted RBP19.45■□□□□ 0.7
CLK3-210ENST00000563112 DHX37Q8IY37 1157 aaKnown RBP19.45■□□□□ 0.7
CLK3-210ENST00000563112 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.45■□□□□ 0.71e-9■■■□□ 18.3
CLK3-210ENST00000563112 NOC4LQ9BVI4 516 aaKnown RBP19.45■□□□□ 0.7
CLK3-210ENST00000563112 PLEKHA8P1O95397 391 aa19.44■□□□□ 0.7
CLK3-210ENST00000563112 MMP3P08254 477 aa19.44■□□□□ 0.7
CLK3-210ENST00000563112 CHMP4BP1P59074 171 aa19.44■□□□□ 0.7
CLK3-210ENST00000563112 DGKDQ16760 1214 aa19.44■□□□□ 0.7
CLK3-210ENST00000563112 TSGA10IPQ3SY00 556 aa19.44■□□□□ 0.7
CLK3-210ENST00000563112 DHX32Q7L7V1 743 aaKnown RBP19.44■□□□□ 0.7
CLK3-210ENST00000563112 SGMS1Q86VZ5 419 aa19.44■□□□□ 0.7
CLK3-210ENST00000563112 SRBD1Q8N5C6 995 aaKnown RBP19.44■□□□□ 0.7
CLK3-210ENST00000563112 FANCBQ8NB91 859 aa19.44■□□□□ 0.7
CLK3-210ENST00000563112 SMARCC2Q8TAQ2 1214 aa19.44■□□□□ 0.7
CLK3-210ENST00000563112 EMID1Q96A84 441 aaPredicted RBP19.44■□□□□ 0.7
CLK3-210ENST00000563112 IL23AQ9NPF7 189 aa19.44■□□□□ 0.7
CLK3-210ENST00000563112 TRMT13Q9NUP7 481 aaKnown RBP19.44■□□□□ 0.7
CLK3-210ENST00000563112 MTMR10Q9NXD2 777 aa19.44■□□□□ 0.7
CLK3-210ENST00000563112 SCN10AQ9Y5Y9 1956 aa19.43■□□□□ 0.7
CLK3-210ENST00000563112 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.43■□□□□ 0.7
CLK3-210ENST00000563112 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.43■□□□□ 0.7
CLK3-210ENST00000563112 HMGB1P09429 215 aaKnown RBP19.43■□□□□ 0.7
CLK3-210ENST00000563112 TGFB3P10600 412 aa19.43■□□□□ 0.7
CLK3-210ENST00000563112 CCL23P55773 120 aa19.43■□□□□ 0.7
CLK3-210ENST00000563112 COL9A3Q14050 684 aaPredicted RBP19.43■□□□□ 0.7
CLK3-210ENST00000563112 GNPTABQ3T906 1256 aa19.43■□□□□ 0.7
CLK3-210ENST00000563112 TMEM240Q5SV17 173 aa19.43■□□□□ 0.7
CLK3-210ENST00000563112 MICU3Q86XE3 530 aa19.43■□□□□ 0.7
CLK3-210ENST00000563112 RAB11FIP4Q86YS3 637 aa19.43■□□□□ 0.7
CLK3-210ENST00000563112 RPUSD2Q8IZ73 545 aaKnown RBP19.43■□□□□ 0.7
CLK3-210ENST00000563112 MTIF3Q9H2K0 278 aaKnown RBP19.43■□□□□ 0.7
CLK3-210ENST00000563112 NOD1Q9Y239 953 aa19.43■□□□□ 0.7
CLK3-210ENST00000563112 STAM2O75886 525 aa19.42■□□□□ 0.7
CLK3-210ENST00000563112 ACRP10323 421 aa19.42■□□□□ 0.7
CLK3-210ENST00000563112 EXOSC10Q01780 885 aaKnown RBP19.42■□□□□ 0.7
CLK3-210ENST00000563112 ZNF365Q70YC5 407 aa19.42■□□□□ 0.7
CLK3-210ENST00000563112 C16orf59Q7L2K0 433 aa19.42■□□□□ 0.7
CLK3-210ENST00000563112 RASEFQ8IZ41 740 aa19.42■□□□□ 0.7
CLK3-210ENST00000563112 CMTR1Q8N1G2 835 aaKnown RBP19.42■□□□□ 0.7
CLK3-210ENST00000563112 IL31RAQ8NI17 732 aa19.42■□□□□ 0.7
CLK3-210ENST00000563112 RGS20O76081 388 aa19.41■□□□□ 0.7
CLK3-210ENST00000563112 FGBP02675 491 aa19.41■□□□□ 0.7
CLK3-210ENST00000563112 CYP2C9P11712 490 aa19.41■□□□□ 0.7
CLK3-210ENST00000563112 FGD1P98174 961 aa19.41■□□□□ 0.7
CLK3-210ENST00000563112 TMTC3Q6ZXV5 915 aa19.41■□□□□ 0.7
CLK3-210ENST00000563112 CCDC82Q8N4S0 544 aa19.41■□□□□ 0.7
CLK3-210ENST00000563112 PPTC7Q8NI37 304 aa19.41■□□□□ 0.7
CLK3-210ENST00000563112 KATNAL1Q9BW62 490 aa19.41■□□□□ 0.7
CLK3-210ENST00000563112 MLXIPQ9HAP2 919 aa19.41■□□□□ 0.7
CLK3-210ENST00000563112 RBM28Q9NW13 759 aaKnown RBP19.41■□□□□ 0.7
CLK3-210ENST00000563112 STXBP5LQ9Y2K9 1186 aa19.41■□□□□ 0.7
CLK3-210ENST00000563112 UMODL1Q5DID0 1318 aa19.41■□□□□ 0.7
CLK3-210ENST00000563112 LAMA2P24043 3122 aaKnown RBP19.41■□□□□ 0.7
CLK3-210ENST00000563112 MYH7BA7E2Y1 1941 aa19.41■□□□□ 0.7
CLK3-210ENST00000563112 PIK3CDO00329 1044 aa19.4■□□□□ 0.7
CLK3-210ENST00000563112 GGPS1O95749 300 aa19.4■□□□□ 0.7
CLK3-210ENST00000563112 ADCK5Q3MIX3 580 aa19.4■□□□□ 0.7
CLK3-210ENST00000563112 MYSM1Q5VVJ2 828 aa19.4■□□□□ 0.7
CLK3-210ENST00000563112 XRRA1Q6P2D8 792 aa19.4■□□□□ 0.7
CLK3-210ENST00000563112 APOA5Q6Q788 366 aa19.4■□□□□ 0.7
CLK3-210ENST00000563112 USP17L6PQ6QN14 398 aa19.4■□□□□ 0.7
CLK3-210ENST00000563112 RETREG2Q8NC44 543 aa19.4■□□□□ 0.7
CLK3-210ENST00000563112 ZFP91Q96JP5 570 aaPredicted RBP19.4■□□□□ 0.7
CLK3-210ENST00000563112 FAM161BQ96MY7 647 aa19.4■□□□□ 0.7
CLK3-210ENST00000563112 SPATA33Q96N06 139 aa19.4■□□□□ 0.7
CLK3-210ENST00000563112 PSTPIP2Q9H939 334 aa19.4■□□□□ 0.7
CLK3-210ENST00000563112 ZBTB43O43298 467 aa19.39■□□□□ 0.69
CLK3-210ENST00000563112 PPFIA4O75335 1185 aa19.39■□□□□ 0.69
CLK3-210ENST00000563112 REC8O95072 547 aa19.39■□□□□ 0.69
CLK3-210ENST00000563112 BFSP2Q13515 415 aa19.39■□□□□ 0.69
CLK3-210ENST00000563112 CELF3Q5SZQ8 465 aaKnown RBP19.39■□□□□ 0.69
CLK3-210ENST00000563112 CCDC155Q8N6L0 562 aa19.39■□□□□ 0.69
CLK3-210ENST00000563112 C7orf31Q8N865 590 aa19.39■□□□□ 0.69
CLK3-210ENST00000563112 PPP1R13LQ8WUF5 828 aa19.39■□□□□ 0.69
CLK3-210ENST00000563112 TCEANC2Q96MN5 208 aa19.39■□□□□ 0.69
CLK3-210ENST00000563112 WNT8AQ9H1J5 351 aa19.39■□□□□ 0.69
CLK3-210ENST00000563112 FRMPD4Q14CM0 1322 aa19.39■□□□□ 0.69
CLK3-210ENST00000563112 TMEM265A0A087WTH1 108 aa19.38■□□□□ 0.69
CLK3-210ENST00000563112 MEIS2O14770 477 aa19.38■□□□□ 0.69
CLK3-210ENST00000563112 SORBS3O60504 671 aa19.38■□□□□ 0.69
CLK3-210ENST00000563112 UBA1P22314 1058 aaKnown RBP19.38■□□□□ 0.69
CLK3-210ENST00000563112 PSEN2P49810 448 aa19.38■□□□□ 0.69
CLK3-210ENST00000563112 PTGISQ16647 500 aa19.38■□□□□ 0.69
CLK3-210ENST00000563112 RTN1Q16799 776 aa19.38■□□□□ 0.69
CLK3-210ENST00000563112 RASIP1Q5U651 963 aa19.38■□□□□ 0.69
CLK3-210ENST00000563112 SESTD1Q86VW0 696 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms