RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 IFNL1Q8IU54 200 aa15.36■□□□□ 0.05
VPS39-206ENST00000562662 ANKRD35Q8N283 1001 aa15.36■□□□□ 0.05
VPS39-206ENST00000562662 GPRC5AQ8NFJ5 357 aa15.36■□□□□ 0.05
VPS39-206ENST00000562662 CYP2W1Q8TAV3 490 aa15.36■□□□□ 0.05
VPS39-206ENST00000562662 ETNPPLQ8TBG4 499 aa15.36■□□□□ 0.05
VPS39-206ENST00000562662 SYMPKQ92797 1274 aaKnown RBP15.36■□□□□ 0.05
VPS39-206ENST00000562662 RMDN3Q96TC7 470 aa15.36■□□□□ 0.05
VPS39-206ENST00000562662 PDCD2LQ9BRP1 358 aa15.36■□□□□ 0.05
VPS39-206ENST00000562662 MROH8Q9H579 483 aa15.36■□□□□ 0.05
VPS39-206ENST00000562662 DOCK3Q8IZD9 2030 aa15.36■□□□□ 0.05
VPS39-206ENST00000562662 ZNF236Q9UL36 1845 aa15.36■□□□□ 0.05
VPS39-206ENST00000562662 TBX3O15119 743 aa15.35■□□□□ 0.05
VPS39-206ENST00000562662 MSH4O15457 936 aa15.35■□□□□ 0.05
VPS39-206ENST00000562662 ZNF76P36508 570 aa15.35■□□□□ 0.05
VPS39-206ENST00000562662 TXKP42681 527 aa15.35■□□□□ 0.05
VPS39-206ENST00000562662 FXR2P51116 673 aaKnown RBP eCLIP15.35■□□□□ 0.05
VPS39-206ENST00000562662 MRPS9P82933 396 aaKnown RBP15.35■□□□□ 0.05
VPS39-206ENST00000562662 CEP55Q53EZ4 464 aa15.35■□□□□ 0.05
VPS39-206ENST00000562662 ARHGEF16Q5VV41 709 aa15.35■□□□□ 0.05
VPS39-206ENST00000562662 CYP4F22Q6NT55 531 aa15.35■□□□□ 0.05
VPS39-206ENST00000562662 ANKRD13CQ8N6S4 541 aa15.35■□□□□ 0.05
VPS39-206ENST00000562662 IGSF22Q8N9C0 903 aa15.35■□□□□ 0.05
VPS39-206ENST00000562662 SYAP1Q96A49 352 aaPredicted RBP15.35■□□□□ 0.05
VPS39-206ENST00000562662 EPSTI1Q96J88 318 aa15.35■□□□□ 0.05
VPS39-206ENST00000562662 ZIC5Q96T25 663 aa15.35■□□□□ 0.05
VPS39-206ENST00000562662 MXRA8Q9BRK3 442 aa15.35■□□□□ 0.05
VPS39-206ENST00000562662 GZF1Q9H116 711 aaPredicted RBP15.35■□□□□ 0.05
VPS39-206ENST00000562662 PORCNQ9H237 461 aa15.35■□□□□ 0.05
VPS39-206ENST00000562662 CLSTN2Q9H4D0 955 aa15.35■□□□□ 0.05
VPS39-206ENST00000562662 FAM13BQ9NYF5 915 aa15.35■□□□□ 0.05
VPS39-206ENST00000562662 MGAMO43451 1857 aa15.35■□□□□ 0.05
VPS39-206ENST00000562662 DOCK5Q9H7D0 1870 aa15.35■□□□□ 0.05
VPS39-206ENST00000562662 WDR81Q562E7 1941 aa15.35■□□□□ 0.05
VPS39-206ENST00000562662 RASSF10A6NK89 507 aa15.34■□□□□ 0.05
VPS39-206ENST00000562662 MEIS1O00470 390 aa15.34■□□□□ 0.05
VPS39-206ENST00000562662 ZNF202O95125 648 aa15.34■□□□□ 0.05
VPS39-206ENST00000562662 TECP42680 631 aa15.34■□□□□ 0.05
VPS39-206ENST00000562662 SYKP43405 635 aa15.34■□□□□ 0.05
VPS39-206ENST00000562662 TM4SF4P48230 202 aa15.34■□□□□ 0.05
VPS39-206ENST00000562662 APLP1P51693 650 aa15.34■□□□□ 0.05
VPS39-206ENST00000562662 CCNA1P78396 465 aa15.34■□□□□ 0.05
VPS39-206ENST00000562662 CNTN2Q02246 1040 aa15.34■□□□□ 0.05
VPS39-206ENST00000562662 SREBF2Q12772 1141 aa15.34■□□□□ 0.05
VPS39-206ENST00000562662 FAM110CQ1W6H9 321 aa15.34■□□□□ 0.05
VPS39-206ENST00000562662 ZSCAN23Q3MJ62 389 aa15.34■□□□□ 0.05
VPS39-206ENST00000562662 NIPA1Q7RTP0 329 aa15.34■□□□□ 0.05
VPS39-206ENST00000562662 PLA2G4DQ86XP0 818 aa15.34■□□□□ 0.05
VPS39-206ENST00000562662 NSUN6Q8TEA1 469 aaKnown RBP15.34■□□□□ 0.05
VPS39-206ENST00000562662 GJA10Q969M2 543 aa15.34■□□□□ 0.05
VPS39-206ENST00000562662 ZFP91Q96JP5 570 aaPredicted RBP15.34■□□□□ 0.05
VPS39-206ENST00000562662 AK8Q96MA6 479 aa15.34■□□□□ 0.05
VPS39-206ENST00000562662 ANP32EQ9BTT0 268 aa15.34■□□□□ 0.05
VPS39-206ENST00000562662 EFCC1Q9HA90 598 aa15.34■□□□□ 0.05
VPS39-206ENST00000562662 CREBZFQ9NS37 354 aa15.34■□□□□ 0.05
VPS39-206ENST00000562662 KCNH3Q9ULD8 1083 aa15.34■□□□□ 0.05
VPS39-206ENST00000562662 UBIAD1Q9Y5Z9 338 aa15.34■□□□□ 0.05
VPS39-206ENST00000562662 ASTN1O14525 1302 aa15.34■□□□□ 0.05
VPS39-206ENST00000562662 A0A087X0B3 334 aa15.33■□□□□ 0.04
VPS39-206ENST00000562662 BCRP11274 1271 aa15.33■□□□□ 0.04
VPS39-206ENST00000562662 ITGB5P18084 799 aa15.33■□□□□ 0.04
VPS39-206ENST00000562662 SETQ01105 290 aaPredicted RBP15.33■□□□□ 0.04
VPS39-206ENST00000562662 TAF1CQ15572 869 aaPredicted RBP15.33■□□□□ 0.04
VPS39-206ENST00000562662 TMEM266Q2M3C6 531 aa15.33■□□□□ 0.04
VPS39-206ENST00000562662 XRRA1Q6P2D8 792 aa15.33■□□□□ 0.04
VPS39-206ENST00000562662 VSIG10LQ86VR7 867 aa15.33■□□□□ 0.04
VPS39-206ENST00000562662 SLFN12Q8IYM2 578 aa15.33■□□□□ 0.04
VPS39-206ENST00000562662 FAM133AQ8N9E0 248 aa15.33■□□□□ 0.04
VPS39-206ENST00000562662 DNERQ8NFT8 737 aa15.33■□□□□ 0.04
VPS39-206ENST00000562662 FAM20AQ96MK3 541 aa15.33■□□□□ 0.04
VPS39-206ENST00000562662 MMP19Q99542 508 aa15.33■□□□□ 0.04
VPS39-206ENST00000562662 NUP62CLQ9H1M0 184 aa15.33■□□□□ 0.04
VPS39-206ENST00000562662 TTC12Q9H892 705 aaPredicted RBP15.33■□□□□ 0.04
VPS39-206ENST00000562662 DNAJC25-GNG10A0A024R161 153 aa15.32■□□□□ 0.04
VPS39-206ENST00000562662 SOWAHBA6NEL2 793 aa15.32■□□□□ 0.04
VPS39-206ENST00000562662 PP2D1A8MPX8 630 aa15.32■□□□□ 0.04
VPS39-206ENST00000562662 POTEB2H3BUK9 544 aa15.32■□□□□ 0.04
VPS39-206ENST00000562662 KINO60870 393 aaKnown RBP15.32■□□□□ 0.04
VPS39-206ENST00000562662 NR3C2P08235 984 aa15.32■□□□□ 0.04
VPS39-206ENST00000562662 ARP10275 920 aa15.32■□□□□ 0.04
VPS39-206ENST00000562662 MYCLP12524 364 aaPredicted RBP15.32■□□□□ 0.04
VPS39-206ENST00000562662 CCND2P30279 289 aa15.32■□□□□ 0.04
VPS39-206ENST00000562662 CDC25AP30304 524 aa15.32■□□□□ 0.04
VPS39-206ENST00000562662 ALDH5A1P51649 535 aaPredicted RBP15.32■□□□□ 0.04
VPS39-206ENST00000562662 PDIA5Q14554 519 aa15.32■□□□□ 0.04
VPS39-206ENST00000562662 PAXIP1Q6ZW49 1069 aaPredicted RBP15.32■□□□□ 0.04
VPS39-206ENST00000562662 SLC5A5Q92911 643 aa15.32■□□□□ 0.04
VPS39-206ENST00000562662 FGD4Q96M96 766 aa15.32■□□□□ 0.04
VPS39-206ENST00000562662 TIGD1Q96MW7 591 aa15.32■□□□□ 0.04
VPS39-206ENST00000562662 UIMC1Q96RL1 719 aa15.32■□□□□ 0.04
VPS39-206ENST00000562662 CCSER1Q9C0I3 900 aa15.32■□□□□ 0.04
VPS39-206ENST00000562662 JADE2Q9NQC1 790 aa15.32■□□□□ 0.04
VPS39-206ENST00000562662 POTEMA6NI47 508 aa15.31■□□□□ 0.04
VPS39-206ENST00000562662 POLR2DO15514 142 aaKnown RBP15.31■□□□□ 0.04
VPS39-206ENST00000562662 MARCH6O60337 910 aa15.31■□□□□ 0.04
VPS39-206ENST00000562662 FCER1AP12319 257 aa15.31■□□□□ 0.04
VPS39-206ENST00000562662 SPIRE1Q08AE8 756 aa15.31■□□□□ 0.04
VPS39-206ENST00000562662 KCTD2Q14681 263 aa15.31■□□□□ 0.04
VPS39-206ENST00000562662 DEFB115Q30KQ5 88 aa15.31■□□□□ 0.04
VPS39-206ENST00000562662 WDR78Q5VTH9 848 aa15.31■□□□□ 0.04
VPS39-206ENST00000562662 KRBA2Q6ZNG9 492 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms