RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 TAP1Q03518 808 aa22.15■■□□□ 1.14
VPS35-202ENST00000561713 AAK1Q2M2I8 961 aa22.15■■□□□ 1.14
VPS35-202ENST00000561713 CCDC178Q5BJE1 867 aa22.15■■□□□ 1.14
VPS35-202ENST00000561713 IFIT1BQ5T764 474 aaKnown RBP22.15■■□□□ 1.14
VPS35-202ENST00000561713 RETREG2Q8NC44 543 aa22.15■■□□□ 1.14
VPS35-202ENST00000561713 PHOSPHO2Q8TCD6 241 aa22.15■■□□□ 1.14
VPS35-202ENST00000561713 SCFD2Q8WU76 684 aa22.15■■□□□ 1.14
VPS35-202ENST00000561713 ARNTL2Q8WYA1 636 aa22.15■■□□□ 1.14
VPS35-202ENST00000561713 CNNM2Q9H8M5 875 aa22.15■■□□□ 1.14
VPS35-202ENST00000561713 TRIP12Q14669 1992 aaPredicted RBP22.14■■□□□ 1.14
VPS35-202ENST00000561713 ABCB11O95342 1321 aa22.14■■□□□ 1.14
VPS35-202ENST00000561713 DOCK5Q9H7D0 1870 aa22.14■■□□□ 1.13
VPS35-202ENST00000561713 KPNA6O60684 536 aa22.14■■□□□ 1.13
VPS35-202ENST00000561713 TXNP10599 105 aaKnown RBP22.14■■□□□ 1.13
VPS35-202ENST00000561713 CHMLP26374 656 aa22.14■■□□□ 1.13
VPS35-202ENST00000561713 CHMP4BP1P59074 171 aa22.14■■□□□ 1.13
VPS35-202ENST00000561713 SEC23AQ15436 765 aa22.14■■□□□ 1.13
VPS35-202ENST00000561713 HERC6Q8IVU3 1022 aa22.14■■□□□ 1.13
VPS35-202ENST00000561713 JMJD4Q9H9V9 463 aa22.14■■□□□ 1.13
VPS35-202ENST00000561713 SENP2Q9HC62 589 aa22.14■■□□□ 1.13
VPS35-202ENST00000561713 PNMA2Q9UL42 364 aa22.14■■□□□ 1.13
VPS35-202ENST00000561713 CYP21A2P08686 494 aa22.13■■□□□ 1.13
VPS35-202ENST00000561713 PTPN11Q06124 597 aaPredicted RBP22.13■■□□□ 1.13
VPS35-202ENST00000561713 DNERQ8NFT8 737 aa22.13■■□□□ 1.13
VPS35-202ENST00000561713 SYTL5Q8TDW5 730 aaPredicted RBP22.13■■□□□ 1.13
VPS35-202ENST00000561713 TAAR1Q96RJ0 339 aa22.13■■□□□ 1.13
VPS35-202ENST00000561713 MPHOSPH6Q99547 160 aaKnown RBP22.13■■□□□ 1.13
VPS35-202ENST00000561713 NT5C2P49902 561 aa22.12■■□□□ 1.13
VPS35-202ENST00000561713 BFSP2Q13515 415 aa22.12■■□□□ 1.13
VPS35-202ENST00000561713 STOX1Q6ZVD7 989 aa22.12■■□□□ 1.13
VPS35-202ENST00000561713 SPRED2Q7Z698 418 aa22.12■■□□□ 1.13
VPS35-202ENST00000561713 FBXO11Q86XK2 927 aa22.12■■□□□ 1.13
VPS35-202ENST00000561713 NOD1Q9Y239 953 aa22.12■■□□□ 1.13
VPS35-202ENST00000561713 PPP1R11O60927 126 aaPredicted RBP22.11■■□□□ 1.13
VPS35-202ENST00000561713 EIF2AK2P19525 551 aaKnown RBP22.11■■□□□ 1.13
VPS35-202ENST00000561713 PTGISQ16647 500 aa22.11■■□□□ 1.13
VPS35-202ENST00000561713 SLC35G1Q2M3R5 365 aa22.11■■□□□ 1.13
VPS35-202ENST00000561713 CHST3Q7LGC8 479 aa22.11■■□□□ 1.13
VPS35-202ENST00000561713 TET1Q8NFU7 2136 aa22.11■■□□□ 1.13
VPS35-202ENST00000561713 KIF28PB7ZC32 967 aa22.1■■□□□ 1.13
VPS35-202ENST00000561713 OPLAHO14841 1288 aa22.1■■□□□ 1.13
VPS35-202ENST00000561713 SEPT14Q6ZU15 432 aa22.1■■□□□ 1.13
VPS35-202ENST00000561713 TMCO2Q7Z6W1 182 aaPredicted RBP22.1■■□□□ 1.13
VPS35-202ENST00000561713 HOMER1Q86YM7 354 aa22.1■■□□□ 1.13
VPS35-202ENST00000561713 CTAGE1Q96RT6 745 aa22.1■■□□□ 1.13
VPS35-202ENST00000561713 C1QTNF1Q9BXJ1 281 aa22.1■■□□□ 1.13
VPS35-202ENST00000561713 MAD2L2Q9UI95 211 aa22.1■■□□□ 1.13
VPS35-202ENST00000561713 PTPRSQ13332 1948 aa22.1■■□□□ 1.13
VPS35-202ENST00000561713 KLRF2D3W0D1 207 aa22.09■■□□□ 1.13
VPS35-202ENST00000561713 RBAK-RBAKDNI3L0D1 243 aa22.09■■□□□ 1.13
VPS35-202ENST00000561713 TLL1O43897 1013 aa22.09■■□□□ 1.13
VPS35-202ENST00000561713 BAIAP3O94812 1187 aa22.09■■□□□ 1.13
VPS35-202ENST00000561713 CFBP00751 764 aa22.09■■□□□ 1.13
VPS35-202ENST00000561713 PLA2G5P39877 138 aa22.09■■□□□ 1.13
VPS35-202ENST00000561713 GRB10Q13322 594 aa22.09■■□□□ 1.13
VPS35-202ENST00000561713 GPNMBQ14956 572 aa22.09■■□□□ 1.13
VPS35-202ENST00000561713 CCDC62Q6P9F0 684 aa22.09■■□□□ 1.13
VPS35-202ENST00000561713 AFG1LQ8WV93 481 aa22.09■■□□□ 1.13
VPS35-202ENST00000561713 RUFY2Q8WXA3 655 aa22.09■■□□□ 1.13
VPS35-202ENST00000561713 RMDN3Q96TC7 470 aa22.09■■□□□ 1.13
VPS35-202ENST00000561713 COG5Q9UP83 839 aa22.09■■□□□ 1.13
VPS35-202ENST00000561713 LCHNA4D1U4 455 aa22.08■■□□□ 1.13
VPS35-202ENST00000561713 B4DLN1 442 aa22.08■■□□□ 1.13
VPS35-202ENST00000561713 IFIT3O14879 490 aaKnown RBP22.08■■□□□ 1.13
VPS35-202ENST00000561713 SGSM2O43147 1006 aa22.08■■□□□ 1.13
VPS35-202ENST00000561713 LPXNO60711 386 aa22.08■■□□□ 1.13
VPS35-202ENST00000561713 MRPL12P52815 198 aaKnown RBP22.08■■□□□ 1.13
VPS35-202ENST00000561713 TRDNQ13061 729 aa22.08■■□□□ 1.13
VPS35-202ENST00000561713 LY6KQ17RY6 165 aa22.08■■□□□ 1.13
VPS35-202ENST00000561713 GDF6Q6KF10 455 aaPredicted RBP22.08■■□□□ 1.13
VPS35-202ENST00000561713 SKAP1Q86WV1 359 aa22.08■■□□□ 1.13
VPS35-202ENST00000561713 RGS22Q8NE09 1264 aa22.08■■□□□ 1.13
VPS35-202ENST00000561713 MRPL11Q9Y3B7 192 aaKnown RBP22.08■■□□□ 1.13
VPS35-202ENST00000561713 E7EWF7 191 aa22.07■■□□□ 1.12
VPS35-202ENST00000561713 MMP3P08254 477 aa22.07■■□□□ 1.12
VPS35-202ENST00000561713 KCNJ6P48051 423 aa22.07■■□□□ 1.12
VPS35-202ENST00000561713 ANTXR2P58335 489 aa22.07■■□□□ 1.12
VPS35-202ENST00000561713 WDR5P61964 334 aaKnown RBP22.07■■□□□ 1.12
VPS35-202ENST00000561713 GRM4Q14833 912 aa22.07■■□□□ 1.12
VPS35-202ENST00000561713 RALYLQ86SE5 291 aaKnown RBP22.07■■□□□ 1.12
VPS35-202ENST00000561713 CAGE1Q8TC20 777 aa22.07■■□□□ 1.12
VPS35-202ENST00000561713 AFAP1L1Q8TED9 768 aa22.07■■□□□ 1.12
VPS35-202ENST00000561713 KAT2BQ92831 832 aa22.07■■□□□ 1.12
VPS35-202ENST00000561713 HLA-CQ95604 372 aa22.07■■□□□ 1.12
VPS35-202ENST00000561713 FAM122AQ96E09 287 aa22.07■■□□□ 1.12
VPS35-202ENST00000561713 AMNQ9BXJ7 453 aa22.07■■□□□ 1.12
VPS35-202ENST00000561713 EPHX3Q9H6B9 360 aa22.07■■□□□ 1.12
VPS35-202ENST00000561713 U3KPZ7 1027 aaPredicted RBP22.07■■□□□ 1.12
VPS35-202ENST00000561713 SORBS3O60504 671 aa22.06■■□□□ 1.12
VPS35-202ENST00000561713 HOXA13P31271 388 aaPredicted RBP22.06■■□□□ 1.12
VPS35-202ENST00000561713 ARHGAP1Q07960 439 aa22.06■■□□□ 1.12
VPS35-202ENST00000561713 ARHGEF16Q5VV41 709 aa22.06■■□□□ 1.12
VPS35-202ENST00000561713 MCF2L2Q86YR7 1114 aa22.06■■□□□ 1.12
VPS35-202ENST00000561713 CCDC155Q8N6L0 562 aa22.06■■□□□ 1.12
VPS35-202ENST00000561713 NSUN6Q8TEA1 469 aaKnown RBP22.06■■□□□ 1.12
VPS35-202ENST00000561713 PIBF1Q8WXW3 757 aa22.06■■□□□ 1.12
VPS35-202ENST00000561713 DHX38Q92620 1227 aaKnown RBP22.06■■□□□ 1.12
VPS35-202ENST00000561713 PXMP2Q9NR77 195 aa22.06■■□□□ 1.12
VPS35-202ENST00000561713 RBM8AQ9Y5S9 174 aaKnown RBP22.06■■□□□ 1.12
VPS35-202ENST00000561713 PALM3A6NDB9 673 aaPredicted RBP22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms