RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 CHST3Q7LGC8 479 aa18.83■□□□□ 0.61
SNX1-213ENST00000561026 HOMER1Q86YM7 354 aa18.83■□□□□ 0.61
SNX1-213ENST00000561026 MSRAQ9UJ68 235 aa18.83■□□□□ 0.61
SNX1-213ENST00000561026 MYH6P13533 1939 aa18.83■□□□□ 0.6
SNX1-213ENST00000561026 PITPNM1O00562 1244 aa18.82■□□□□ 0.6
SNX1-213ENST00000561026 CYTH3O43739 400 aa18.82■□□□□ 0.6
SNX1-213ENST00000561026 CASTP20810 708 aaKnown RBP18.82■□□□□ 0.6
SNX1-213ENST00000561026 HOXA13P31271 388 aaPredicted RBP18.82■□□□□ 0.6
SNX1-213ENST00000561026 IGDCC4Q8TDY8 1250 aa18.82■□□□□ 0.6
SNX1-213ENST00000561026 KAT2BQ92831 832 aa18.82■□□□□ 0.6
SNX1-213ENST00000561026 EMID1Q96A84 441 aaPredicted RBP18.82■□□□□ 0.6
SNX1-213ENST00000561026 PIGSQ96S52 555 aa18.82■□□□□ 0.6
SNX1-213ENST00000561026 PDCD2LQ9BRP1 358 aa18.82■□□□□ 0.6
SNX1-213ENST00000561026 SLC4A7Q9Y6M7 1214 aa18.82■□□□□ 0.6
SNX1-213ENST00000561026 ANTXR2P58335 489 aa18.81■□□□□ 0.6
SNX1-213ENST00000561026 CHMP4BP1P59074 171 aa18.81■□□□□ 0.6
SNX1-213ENST00000561026 LAMC2Q13753 1193 aa18.81■□□□□ 0.6
SNX1-213ENST00000561026 DGKDQ16760 1214 aa18.81■□□□□ 0.6
SNX1-213ENST00000561026 TMEM67Q5HYA8 995 aa18.81■□□□□ 0.6
SNX1-213ENST00000561026 DEFB128Q7Z7B8 93 aa18.81■□□□□ 0.6
SNX1-213ENST00000561026 VSIG10LQ86VR7 867 aa18.81■□□□□ 0.6
SNX1-213ENST00000561026 SESTD1Q86VW0 696 aa18.81■□□□□ 0.6
SNX1-213ENST00000561026 RETREG2Q8NC44 543 aa18.81■□□□□ 0.6
SNX1-213ENST00000561026 NOD1Q9Y239 953 aa18.81■□□□□ 0.6
SNX1-213ENST00000561026 RBM8AQ9Y5S9 174 aaKnown RBP18.81■□□□□ 0.6
SNX1-213ENST00000561026 MRVI1Q9Y6F6 885 aa18.81■□□□□ 0.6
SNX1-213ENST00000561026 PNMA6FA0A0J9YX94 578 aa18.81■□□□□ 0.6
SNX1-213ENST00000561026 RGS20O76081 388 aa18.81■□□□□ 0.6
SNX1-213ENST00000561026 IQCF3P0C7M6 154 aa18.81■□□□□ 0.6
SNX1-213ENST00000561026 RFC2P35250 354 aa18.81■□□□□ 0.6
SNX1-213ENST00000561026 BFSP2Q13515 415 aa18.81■□□□□ 0.6
SNX1-213ENST00000561026 PTGISQ16647 500 aa18.81■□□□□ 0.6
SNX1-213ENST00000561026 CATIPQ7Z7H3 387 aa18.81■□□□□ 0.6
SNX1-213ENST00000561026 MB21D2Q8IYB1 491 aaPredicted RBP18.81■□□□□ 0.6
SNX1-213ENST00000561026 PPTC7Q8NI37 304 aa18.81■□□□□ 0.6
SNX1-213ENST00000561026 COL25A1Q9BXS0 654 aaPredicted RBP18.81■□□□□ 0.6
SNX1-213ENST00000561026 ZBBXA8MT70 800 aa18.8■□□□□ 0.6
SNX1-213ENST00000561026 GCOM1H8Y6P7 765 aaPredicted RBP18.8■□□□□ 0.6
SNX1-213ENST00000561026 POLR2MP0CAP2 368 aa18.8■□□□□ 0.6
SNX1-213ENST00000561026 MYCLP12524 364 aaPredicted RBP18.8■□□□□ 0.6
SNX1-213ENST00000561026 PGM5Q15124 567 aa18.8■□□□□ 0.6
SNX1-213ENST00000561026 KCNV1Q6PIU1 500 aa18.8■□□□□ 0.6
SNX1-213ENST00000561026 DHX37Q8IY37 1157 aaKnown RBP18.8■□□□□ 0.6
SNX1-213ENST00000561026 CTAGE1Q96RT6 745 aa18.8■□□□□ 0.6
SNX1-213ENST00000561026 NKX2-4Q9H2Z4 354 aa18.8■□□□□ 0.6
SNX1-213ENST00000561026 PRDM12Q9H4Q4 367 aa18.8■□□□□ 0.6
SNX1-213ENST00000561026 SLC28A3Q9HAS3 691 aa18.8■□□□□ 0.6
SNX1-213ENST00000561026 YBX2Q9Y2T7 364 aaKnown RBP18.8■□□□□ 0.6
SNX1-213ENST00000561026 KIAA1217Q5T5P2 1943 aa18.79■□□□□ 0.6
SNX1-213ENST00000561026 BAZ2BQ9UIF8 2168 aaKnown RBP18.79■□□□□ 0.6
SNX1-213ENST00000561026 CHD7Q9P2D1 2997 aa18.79■□□□□ 0.6
SNX1-213ENST00000561026 ATP2A2P16615 1042 aaKnown RBP18.79■□□□□ 0.6
SNX1-213ENST00000561026 RABGGTBP53611 331 aa18.79■□□□□ 0.6
SNX1-213ENST00000561026 GDF6Q6KF10 455 aaPredicted RBP18.79■□□□□ 0.6
SNX1-213ENST00000561026 MYO9BQ13459 2157 aa18.79■□□□□ 0.6
SNX1-213ENST00000561026 TGFB3P10600 412 aa18.78■□□□□ 0.6
SNX1-213ENST00000561026 ACTN1P12814 892 aa18.78■□□□□ 0.6
SNX1-213ENST00000561026 MYSM1Q5VVJ2 828 aa18.78■□□□□ 0.6
SNX1-213ENST00000561026 FCHSD1Q86WN1 690 aa18.78■□□□□ 0.6
SNX1-213ENST00000561026 IL31RAQ8NI17 732 aa18.78■□□□□ 0.6
SNX1-213ENST00000561026 CAGE1Q8TC20 777 aa18.78■□□□□ 0.6
SNX1-213ENST00000561026 GAS2L1Q99501 681 aaPredicted RBP18.78■□□□□ 0.6
SNX1-213ENST00000561026 MAP3K14Q99558 947 aa18.78■□□□□ 0.6
SNX1-213ENST00000561026 MTA3Q9BTC8 594 aa18.78■□□□□ 0.6
SNX1-213ENST00000561026 KATNAL1Q9BW62 490 aa18.78■□□□□ 0.6
SNX1-213ENST00000561026 LY9Q9HBG7 655 aa18.78■□□□□ 0.6
SNX1-213ENST00000561026 PCDHA11Q9Y5I1 949 aa18.78■□□□□ 0.6
SNX1-213ENST00000561026 PPFIA4O75335 1185 aa18.77■□□□□ 0.6
SNX1-213ENST00000561026 F2P00734 622 aa18.77■□□□□ 0.6
SNX1-213ENST00000561026 HOXD8P13378 290 aaPredicted RBP18.77■□□□□ 0.6
SNX1-213ENST00000561026 MYOGP15173 224 aa18.77■□□□□ 0.6
SNX1-213ENST00000561026 CCND2P30279 289 aa18.77■□□□□ 0.6
SNX1-213ENST00000561026 SP2Q02086 613 aa18.77■□□□□ 0.6
SNX1-213ENST00000561026 CELF3Q5SZQ8 465 aaKnown RBP18.77■□□□□ 0.6
SNX1-213ENST00000561026 CCDC155Q8N6L0 562 aa18.77■□□□□ 0.6
SNX1-213ENST00000561026 C7orf31Q8N865 590 aa18.77■□□□□ 0.6
SNX1-213ENST00000561026 USP38Q8NB14 1042 aa18.77■□□□□ 0.6
SNX1-213ENST00000561026 FTOQ9C0B1 505 aaKnown RBP eCLIP18.77■□□□□ 0.6
SNX1-213ENST00000561026 LSG1Q9H089 658 aaKnown RBP18.77■□□□□ 0.6
SNX1-213ENST00000561026 HDAC6Q9UBN7 1215 aa18.77■□□□□ 0.6
SNX1-213ENST00000561026 GTF2IRD1Q9UHL9 959 aa18.77■□□□□ 0.6
SNX1-213ENST00000561026 HAS3O00219 553 aa18.76■□□□□ 0.59
SNX1-213ENST00000561026 DDAH1O94760 285 aa18.76■□□□□ 0.59
SNX1-213ENST00000561026 PSEN2P49810 448 aa18.76■□□□□ 0.59
SNX1-213ENST00000561026 MFSD10Q14728 455 aa18.76■□□□□ 0.59
SNX1-213ENST00000561026 HSDL1Q3SXM5 330 aa18.76■□□□□ 0.59
SNX1-213ENST00000561026 CASC1Q6TDU7 716 aa18.76■□□□□ 0.59
SNX1-213ENST00000561026 ZNF654Q8IZM8 581 aa18.76■□□□□ 0.59
SNX1-213ENST00000561026 CTCFLQ8NI51 663 aaPredicted RBP18.76■□□□□ 0.59
SNX1-213ENST00000561026 AFAP1L1Q8TED9 768 aa18.76■□□□□ 0.59
SNX1-213ENST00000561026 PIBF1Q8WXW3 757 aa18.76■□□□□ 0.59
SNX1-213ENST00000561026 SPATA33Q96N06 139 aa18.76■□□□□ 0.59
SNX1-213ENST00000561026 MYL10Q9BUA6 226 aa18.76■□□□□ 0.59
SNX1-213ENST00000561026 SPZ1Q9BXG8 430 aa18.76■□□□□ 0.59
SNX1-213ENST00000561026 PRC1O43663 620 aa18.75■□□□□ 0.59
SNX1-213ENST00000561026 GGPS1O95749 300 aa18.75■□□□□ 0.59
SNX1-213ENST00000561026 ZNF286BP0CG31 522 aa18.75■□□□□ 0.59
SNX1-213ENST00000561026 SMARCA1P28370 1054 aa18.75■□□□□ 0.59
SNX1-213ENST00000561026 KIF5BP33176 963 aa18.75■□□□□ 0.59
SNX1-213ENST00000561026 MCM5P33992 734 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms