RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 FBXO18Q8NFZ0 1043 aa24.9■■□□□ 1.58
SNX1-210ENST00000560260 LENG1Q96BZ8 264 aaPredicted RBP24.9■■□□□ 1.58
SNX1-210ENST00000560260 ABHD8Q96I13 439 aa24.9■■□□□ 1.58
SNX1-210ENST00000560260 C11orf97A0A1B0GVM6 126 aaPredicted RBP24.89■■□□□ 1.58
SNX1-210ENST00000560260 FAM205CA6NFA0 338 aa24.89■■□□□ 1.58
SNX1-210ENST00000560260 PTGS1P23219 599 aa24.89■■□□□ 1.58
SNX1-210ENST00000560260 KRT2P35908 639 aa24.89■■□□□ 1.58
SNX1-210ENST00000560260 STXBP2Q15833 593 aa24.89■■□□□ 1.58
SNX1-210ENST00000560260 PCNX4Q63HM2 1172 aa24.89■■□□□ 1.58
SNX1-210ENST00000560260 MPHOSPH6Q99547 160 aaKnown RBP24.89■■□□□ 1.58
SNX1-210ENST00000560260 HMX1Q9NP08 348 aaPredicted RBP24.89■■□□□ 1.58
SNX1-210ENST00000560260 PAK6Q9NQU5 681 aaPredicted RBP24.89■■□□□ 1.58
SNX1-210ENST00000560260 BTBD18B2RXH4 712 aa24.88■■□□□ 1.57
SNX1-210ENST00000560260 ADCYAP1R1P41586 468 aa24.88■■□□□ 1.57
SNX1-210ENST00000560260 ANO1Q5XXA6 986 aa24.88■■□□□ 1.57
SNX1-210ENST00000560260 RBM47A0AV96 593 aaKnown RBP24.87■■□□□ 1.57
SNX1-210ENST00000560260 B4DLN1 442 aa24.87■■□□□ 1.57
SNX1-210ENST00000560260 SEPT4O43236 478 aa24.87■■□□□ 1.57
SNX1-210ENST00000560260 EIF3JO75822 258 aaKnown RBP24.87■■□□□ 1.57
SNX1-210ENST00000560260 ARIH2O95376 493 aa24.87■■□□□ 1.57
SNX1-210ENST00000560260 CNGA1P29973 690 aa24.87■■□□□ 1.57
SNX1-210ENST00000560260 ARHGAP4P98171 946 aa24.87■■□□□ 1.57
SNX1-210ENST00000560260 CCDC144BQ3MJ40 725 aa24.87■■□□□ 1.57
SNX1-210ENST00000560260 RNF208Q9H0X6 261 aa24.87■■□□□ 1.57
SNX1-210ENST00000560260 EHMT1Q9H9B1 1298 aa24.87■■□□□ 1.57
SNX1-210ENST00000560260 KIF3AQ9Y496 699 aa24.87■■□□□ 1.57
SNX1-210ENST00000560260 KIF28PB7ZC32 967 aa24.86■■□□□ 1.57
SNX1-210ENST00000560260 SEMA3FQ13275 785 aa24.86■■□□□ 1.57
SNX1-210ENST00000560260 MCTP2Q6DN12 878 aa24.86■■□□□ 1.57
SNX1-210ENST00000560260 INPP4AQ96PE3 977 aaPredicted RBP24.86■■□□□ 1.57
SNX1-210ENST00000560260 RTEL1Q9NZ71 1219 aa24.86■■□□□ 1.57
SNX1-210ENST00000560260 DDX20Q9UHI6 824 aaKnown RBP24.86■■□□□ 1.57
SNX1-210ENST00000560260 UBIAD1Q9Y5Z9 338 aa24.86■■□□□ 1.57
SNX1-210ENST00000560260 AKR1A1P14550 325 aa24.86■■□□□ 1.57
SNX1-210ENST00000560260 ITGB5P18084 799 aa24.86■■□□□ 1.57
SNX1-210ENST00000560260 GJC2Q5T442 439 aaPredicted RBP24.86■■□□□ 1.57
SNX1-210ENST00000560260 LHX8Q68G74 356 aa24.86■■□□□ 1.57
SNX1-210ENST00000560260 SEPT14Q6ZU15 432 aa24.86■■□□□ 1.57
SNX1-210ENST00000560260 KRT25Q7Z3Z0 450 aa24.86■■□□□ 1.57
SNX1-210ENST00000560260 TBCKQ8TEA7 893 aa24.86■■□□□ 1.57
SNX1-210ENST00000560260 BRMS1Q9HCU9 246 aa24.86■■□□□ 1.57
SNX1-210ENST00000560260 SMPD1P17405 629 aa24.85■■□□□ 1.57
SNX1-210ENST00000560260 XRRA1Q6P2D8 792 aa24.85■■□□□ 1.57
SNX1-210ENST00000560260 PIK3AP1Q6ZUJ8 805 aa24.85■■□□□ 1.57
SNX1-210ENST00000560260 SPRYD3Q8NCJ5 442 aa24.85■■□□□ 1.57
SNX1-210ENST00000560260 CYP2W1Q8TAV3 490 aa24.85■■□□□ 1.57
SNX1-210ENST00000560260 DEFB118Q96PH6 123 aa24.85■■□□□ 1.57
SNX1-210ENST00000560260 FAM184BQ9ULE4 1060 aa24.85■■□□□ 1.57
SNX1-210ENST00000560260 CYP3A4P08684 503 aa24.84■■□□□ 1.57
SNX1-210ENST00000560260 NONOQ15233 471 aaKnown RBP eCLIP24.84■■□□□ 1.57
SNX1-210ENST00000560260 INF2Q27J81 1249 aa24.84■■□□□ 1.57
SNX1-210ENST00000560260 LARP1BQ659C4 914 aaKnown RBP24.84■■□□□ 1.57
SNX1-210ENST00000560260 CCDC62Q6P9F0 684 aa24.84■■□□□ 1.57
SNX1-210ENST00000560260 CCDC194A0A1B0GVG4 234 aa24.83■■□□□ 1.56
SNX1-210ENST00000560260 FAM86B1E9PN63 330 aa24.83■■□□□ 1.56
SNX1-210ENST00000560260 STAM2O75886 525 aa24.83■■□□□ 1.56
SNX1-210ENST00000560260 GJB1P08034 283 aa24.83■■□□□ 1.56
SNX1-210ENST00000560260 FAM86B2P0C5J1 330 aa24.83■■□□□ 1.56
SNX1-210ENST00000560260 SCFD2Q8WU76 684 aa24.83■■□□□ 1.56
SNX1-210ENST00000560260 COPS5Q92905 334 aa24.83■■□□□ 1.56
SNX1-210ENST00000560260 MXRA8Q9BRK3 442 aa24.83■■□□□ 1.56
SNX1-210ENST00000560260 WDR11Q9BZH6 1224 aa24.83■■□□□ 1.56
SNX1-210ENST00000560260 GNEQ9Y223 722 aaKnown RBP24.83■■□□□ 1.56
SNX1-210ENST00000560260 IGLV3-22A0A075B6J6 115 aa24.82■■□□□ 1.56
SNX1-210ENST00000560260 POTEFA5A3E0 1075 aa24.82■■□□□ 1.56
SNX1-210ENST00000560260 IRX5P78411 483 aaPredicted RBP24.82■■□□□ 1.56
SNX1-210ENST00000560260 TNFAIP2Q03169 654 aa24.82■■□□□ 1.56
SNX1-210ENST00000560260 SAFBQ15424 915 aaKnown RBP eCLIP24.82■■□□□ 1.56
SNX1-210ENST00000560260 JADE2Q9NQC1 790 aa24.82■■□□□ 1.56
SNX1-210ENST00000560260 WNT7AO00755 349 aa24.81■■□□□ 1.56
SNX1-210ENST00000560260 SYT1P21579 422 aa24.81■■□□□ 1.56
SNX1-210ENST00000560260 ICAM3P32942 547 aa24.81■■□□□ 1.56
SNX1-210ENST00000560260 CIITAP33076 1130 aa24.81■■□□□ 1.56
SNX1-210ENST00000560260 SP2Q02086 613 aa24.81■■□□□ 1.56
SNX1-210ENST00000560260 LY6KQ17RY6 165 aa24.81■■□□□ 1.56
SNX1-210ENST00000560260 DUSP28Q4G0W2 176 aa24.81■■□□□ 1.56
SNX1-210ENST00000560260 IQSEC1Q6DN90 963 aa24.81■■□□□ 1.56
SNX1-210ENST00000560260 U2AF1L4Q8WU68 220 aaKnown RBP24.81■■□□□ 1.56
SNX1-210ENST00000560260 CRISPLD2Q9H0B8 497 aa24.81■■□□□ 1.56
SNX1-210ENST00000560260 FOXP1Q9H334 677 aaPredicted RBP24.81■■□□□ 1.56
SNX1-210ENST00000560260 DDX41Q9UJV9 622 aaKnown RBP24.81■■□□□ 1.56
SNX1-210ENST00000560260 MRVI1Q9Y6F6 885 aa24.81■■□□□ 1.56
SNX1-210ENST00000560260 DOCK5Q9H7D0 1870 aa24.8■■□□□ 1.56
SNX1-210ENST00000560260 SPATA31C2B4DYI2 1134 aa24.8■■□□□ 1.56
SNX1-210ENST00000560260 H3BQV1 296 aa24.8■■□□□ 1.56
SNX1-210ENST00000560260 TDP2O95551 362 aa24.8■■□□□ 1.56
SNX1-210ENST00000560260 HSP90AA1P07900 732 aaKnown RBP24.8■■□□□ 1.56
SNX1-210ENST00000560260 TXNP10599 105 aaKnown RBP24.8■■□□□ 1.56
SNX1-210ENST00000560260 BECN1Q14457 450 aa24.8■■□□□ 1.56
SNX1-210ENST00000560260 TTLL4Q14679 1199 aa24.8■■□□□ 1.56
SNX1-210ENST00000560260 GNPTABQ3T906 1256 aa24.8■■□□□ 1.56
SNX1-210ENST00000560260 CEP55Q53EZ4 464 aa24.8■■□□□ 1.56
SNX1-210ENST00000560260 IFFO2Q5TF58 517 aa24.8■■□□□ 1.56
SNX1-210ENST00000560260 LENG9Q96B70 501 aa24.8■■□□□ 1.56
SNX1-210ENST00000560260 GPRASP2Q96D09 838 aa24.8■■□□□ 1.56
SNX1-210ENST00000560260 TSHZ2Q9NRE2 1034 aa24.8■■□□□ 1.56
SNX1-210ENST00000560260 SYNRGQ9UMZ2 1314 aa24.8■■□□□ 1.56
SNX1-210ENST00000560260 KIAA0100Q14667 2235 aaKnown RBP24.79■■□□□ 1.56
SNX1-210ENST00000560260 MYADML2A6NDP7 307 aa24.79■■□□□ 1.56
SNX1-210ENST00000560260 MEIS1O00470 390 aa24.79■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms