RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 CCDC102AQ96A19 550 aa12.69□□□□□ -0.38
USP3-218ENST00000560202 LENG9Q96B70 501 aa12.69□□□□□ -0.38
USP3-218ENST00000560202 PURBQ96QR8 312 aaKnown RBP12.69□□□□□ -0.38
USP3-218ENST00000560202 KCNMB3Q9NPA1 279 aa12.69□□□□□ -0.38
USP3-218ENST00000560202 PXMP2Q9NR77 195 aa12.69□□□□□ -0.38
USP3-218ENST00000560202 IGLV3-22A0A075B6J6 115 aa12.68□□□□□ -0.38
USP3-218ENST00000560202 TBX3O15119 743 aa12.68□□□□□ -0.38
USP3-218ENST00000560202 LETM1O95202 739 aaPredicted RBP12.68□□□□□ -0.38
USP3-218ENST00000560202 YY1P25490 414 aa12.68□□□□□ -0.38
USP3-218ENST00000560202 TECP42680 631 aa12.68□□□□□ -0.38
USP3-218ENST00000560202 GCLCP48506 637 aaPredicted RBP12.68□□□□□ -0.38
USP3-218ENST00000560202 FXR2P51116 673 aaKnown RBP eCLIP12.68□□□□□ -0.38
USP3-218ENST00000560202 HSP90AA2PQ14568 343 aaPredicted RBP12.68□□□□□ -0.38
USP3-218ENST00000560202 CAMK4Q16566 473 aa12.68□□□□□ -0.38
USP3-218ENST00000560202 TMEM266Q2M3C6 531 aa12.68□□□□□ -0.38
USP3-218ENST00000560202 CEP55Q53EZ4 464 aa12.68□□□□□ -0.38
USP3-218ENST00000560202 ARHGEF16Q5VV41 709 aa12.68□□□□□ -0.38
USP3-218ENST00000560202 PCNX4Q63HM2 1172 aa12.68□□□□□ -0.38
USP3-218ENST00000560202 GPRC5AQ8NFJ5 357 aa12.68□□□□□ -0.38
USP3-218ENST00000560202 HHIPL1Q96JK4 782 aa12.68□□□□□ -0.38
USP3-218ENST00000560202 AK8Q96MA6 479 aa12.68□□□□□ -0.38
USP3-218ENST00000560202 PARK7Q99497 189 aaKnown RBP12.68□□□□□ -0.38
USP3-218ENST00000560202 PDCD2LQ9BRP1 358 aa12.68□□□□□ -0.38
USP3-218ENST00000560202 PFASO15067 1338 aa12.68□□□□□ -0.38
USP3-218ENST00000560202 FAM155AB1AL88 458 aaPredicted RBP12.67□□□□□ -0.38
USP3-218ENST00000560202 EIF2AK2P19525 551 aaKnown RBP12.67□□□□□ -0.38
USP3-218ENST00000560202 INHBEP58166 350 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 PGM5Q15124 567 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 SLFN12Q8IYM2 578 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 IGSF22Q8N9C0 903 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 ZNF784Q8NCA9 323 aaPredicted RBP12.67□□□□□ -0.38
USP3-218ENST00000560202 SHCBP1Q8NEM2 672 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 IL31RAQ8NI17 732 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 ETNPPLQ8TBG4 499 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 NSUN6Q8TEA1 469 aaKnown RBP12.67□□□□□ -0.38
USP3-218ENST00000560202 TIGD1Q96MW7 591 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 MXRA8Q9BRK3 442 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 PANK2Q9BZ23 570 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 TNMDQ9H2S6 317 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 MROH8Q9H579 483 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 TTC12Q9H892 705 aaPredicted RBP12.67□□□□□ -0.38
USP3-218ENST00000560202 ZCCHC17Q9NP64 241 aaKnown RBP12.67□□□□□ -0.38
USP3-218ENST00000560202 RRAGDQ9NQL2 400 aaPredicted RBP12.67□□□□□ -0.38
USP3-218ENST00000560202 PCDHA12Q9UN75 941 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 MYH7BA7E2Y1 1941 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 SYCE3A1L190 88 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 PP2D1A8MPX8 630 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 IGF2BP3O00425 579 aaKnown RBP eCLIP12.67□□□□□ -0.38
USP3-218ENST00000560202 MEIS1O00470 390 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 MSH4O15457 936 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 POLR2DO15514 142 aaKnown RBP12.67□□□□□ -0.38
USP3-218ENST00000560202 CDC25AP30304 524 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 TXLNAP40222 546 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 UBA7P41226 1012 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 MRE11P49959 708 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 ZNF445P59923 1031 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 PDIA5Q14554 519 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.67□□□□□ -0.38
USP3-218ENST00000560202 PLA2G4DQ86XP0 818 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 ANKRD13CQ8N6S4 541 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 PDILTQ8N807 584 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 GJA10Q969M2 543 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 ZFP91Q96JP5 570 aaPredicted RBP12.67□□□□□ -0.38
USP3-218ENST00000560202 FAM20AQ96MK3 541 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 UIMC1Q96RL1 719 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 SDF4Q9BRK5 362 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 RAB34Q9BZG1 259 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 R3HDMLQ9H3Y0 253 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 MORF4L1Q9UBU8 362 aa12.67□□□□□ -0.38
USP3-218ENST00000560202 RBBP6Q7Z6E9 1792 aaKnown RBP12.66□□□□□ -0.38
USP3-218ENST00000560202 A0A087X0B3 334 aa12.66□□□□□ -0.38
USP3-218ENST00000560202 CTAGE5O15320 804 aa12.66□□□□□ -0.38
USP3-218ENST00000560202 NR3C2P08235 984 aa12.66□□□□□ -0.38
USP3-218ENST00000560202 MYCLP12524 364 aaPredicted RBP12.66□□□□□ -0.38
USP3-218ENST00000560202 ITGB5P18084 799 aa12.66□□□□□ -0.38
USP3-218ENST00000560202 CCNA1P78396 465 aa12.66□□□□□ -0.38
USP3-218ENST00000560202 MRPS9P82933 396 aaKnown RBP12.66□□□□□ -0.38
USP3-218ENST00000560202 SETQ01105 290 aaPredicted RBP12.66□□□□□ -0.38
USP3-218ENST00000560202 LONRF3Q496Y0 759 aa12.66□□□□□ -0.38
USP3-218ENST00000560202 XRRA1Q6P2D8 792 aa12.66□□□□□ -0.38
USP3-218ENST00000560202 KRBA2Q6ZNG9 492 aa12.66□□□□□ -0.38
USP3-218ENST00000560202 NIPA1Q7RTP0 329 aa12.66□□□□□ -0.38
USP3-218ENST00000560202 VSIG10LQ86VR7 867 aa12.66□□□□□ -0.38
USP3-218ENST00000560202 DNERQ8NFT8 737 aa12.66□□□□□ -0.38
USP3-218ENST00000560202 CCSER1Q9C0I3 900 aa12.66□□□□□ -0.38
USP3-218ENST00000560202 LRWD1Q9UFC0 647 aa12.66□□□□□ -0.38
USP3-218ENST00000560202 UBIAD1Q9Y5Z9 338 aa12.66□□□□□ -0.38
USP3-218ENST00000560202 POTEB2H3BUK9 544 aa12.65□□□□□ -0.38
USP3-218ENST00000560202 TPM2P07951 284 aa12.65□□□□□ -0.38
USP3-218ENST00000560202 ARP10275 920 aa12.65□□□□□ -0.38
USP3-218ENST00000560202 CCND2P30279 289 aa12.65□□□□□ -0.38
USP3-218ENST00000560202 KCTD2Q14681 263 aa12.65□□□□□ -0.38
USP3-218ENST00000560202 RBM43Q6ZSC3 357 aaKnown RBP12.65□□□□□ -0.38
USP3-218ENST00000560202 CABP7Q86V35 215 aa12.65□□□□□ -0.38
USP3-218ENST00000560202 CNNM3Q8NE01 707 aa12.65□□□□□ -0.38
USP3-218ENST00000560202 DHX58Q96C10 678 aa12.65□□□□□ -0.38
USP3-218ENST00000560202 MMP19Q99542 508 aa12.65□□□□□ -0.38
USP3-218ENST00000560202 PYM1Q9BRP8 204 aaKnown RBP12.65□□□□□ -0.38
USP3-218ENST00000560202 PORCNQ9H237 461 aa12.65□□□□□ -0.38
USP3-218ENST00000560202 JADE2Q9NQC1 790 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms